Cla021241 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla021241
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Unknown Protein (AHRD V1)
Location	Chr5 : 1513152 .. 1513415 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTCCAGACAAACCCGGTGAAGACGCCGGGGTTTCTGGATTTGAATCCGAAGAAACCGAGCCCGATTCTGAGCTTGAGGAGCTGGAGCTTGAAGTTAAGCAAATGGCACAGAGGATTCTTCACTACAGATCCACCCTGTCGGCACAACTCAAATCCTCGTTCTTTTCGTTACTTGAGTCCTCGAGGCCTCTAGCCGTTGGAGCCTCGGAGTCGGGAATATCTGCTCGTCCGGATCATGAAGGTGGGATTCTGAGACTGTAA

mRNA sequence

ATGTCTCCAGACAAACCCGGTGAAGACGCCGGGGTTTCTGGATTTGAATCCGAAGAAACCGAGCCCGATTCTGAGCTTGAGGAGCTGGAGCTTGAAGTTAAGCAAATGGCACAGAGGATTCTTCACTACAGATCCACCCTGTCGGCACAACTCAAATCCTCGTTCTTTTCGTTACTTGAGTCCTCGAGGCCTCTAGCCGTTGGAGCCTCGGAGTCGGGAATATCTGCTCGTCCGGATCATGAAGGTGGGATTCTGAGACTGTAA

Coding sequence (CDS)

ATGTCTCCAGACAAACCCGGTGAAGACGCCGGGGTTTCTGGATTTGAATCCGAAGAAACCGAGCCCGATTCTGAGCTTGAGGAGCTGGAGCTTGAAGTTAAGCAAATGGCACAGAGGATTCTTCACTACAGATCCACCCTGTCGGCACAACTCAAATCCTCGTTCTTTTCGTTACTTGAGTCCTCGAGGCCTCTAGCCGTTGGAGCCTCGGAGTCGGGAATATCTGCTCGTCCGGATCATGAAGGTGGGATTCTGAGACTGTAA

Protein sequence

MSPDKPGEDAGVSGFESEETEPDSELEELELEVKQMAQRILHYRSTLSAQLKSSFFSLLESSRPLAVGASESGISARPDHEGGILRL

Homology

[Close]

BLAST of Cla021241 vs. TrEMBL
Match: A0A0A0L8X5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G122450 PE=4 SV=1)

HSP 1 Score: 142.5 bits (358), Expect = 2.4e-31
Identity = 74/81 (91.36%), Postives = 77/81 (95.06%), Query Frame = 1


Query: 1  MSPDKPGEDAGVSGFESEETEPDSELEELELEVKQMAQRILHYRSTLSAQLKSSFFSLLE 60
          MSPDKPGEDAGVSGFE EETEPDSELEELELEV+QMAQRILHYRSTLSAQ+KSSF SLLE
Sbjct: 1  MSPDKPGEDAGVSGFEPEETEPDSELEELELEVQQMAQRILHYRSTLSAQIKSSFCSLLE 60

Query: 61 SSRPLAVGASESGISARPDHE 82
          SSRPLA+ ASE GISARPDHE
Sbjct: 61 SSRPLAI-ASEPGISARPDHE 80

[Close]

BLAST of Cla021241 vs. TrEMBL
Match: A0A0L9U2Z9_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan03g052700 PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 3.5e-06
Identity = 31/61 (50.82%), Postives = 45/61 (73.77%), Query Frame = 1


Query: 16 ESEETEPDSELEELELEVKQMAQRILHYRSTLSAQLKSSFFSLLESSRP-LAVGASESGI 75
          E+ E E  +E+E+LE ++KQMAQ+IL YR+TL  QL S+  S+L++ RP L +GASE  +
Sbjct: 7  ETHEAEEKAEVEKLESDLKQMAQKILEYRTTLPDQLSSTLRSILDAHRPYLPLGASEQNM 66

[Close]

BLAST of Cla021241 vs. TrEMBL
Match: A0A0S3RSU2_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.04G086100 PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 3.5e-06
Identity = 31/61 (50.82%), Postives = 45/61 (73.77%), Query Frame = 1


Query: 16 ESEETEPDSELEELELEVKQMAQRILHYRSTLSAQLKSSFFSLLESSRP-LAVGASESGI 75
          E+ E E  +E+E+LE ++KQMAQ+IL YR+TL  QL S+  S+L++ RP L +GASE  +
Sbjct: 7  ETHEAEEKAEVEKLESDLKQMAQKILEYRTTLPDQLSSTLRSILDAHRPYLPLGASEQNM 66

[Close]

BLAST of Cla021241 vs. TrEMBL
Match: M5X3C8_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa018011mg PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 4.6e-06
Identity = 30/67 (44.78%), Postives = 42/67 (62.69%), Query Frame = 1


Query: 17 SEETEPDSELEELELEVKQMAQRILHYRSTLSAQLKSSFFSLLESSRPLAVGASESGISA 76
          SE      ELE LE EVK+MA++IL YR+TL  QLK++F S+L   +P+ +  S+ G S 
Sbjct: 9  SESGHDPEELEVLECEVKEMAEKILEYRATLPDQLKNTFASILAVQQPVFLNGSDPGTSG 68

Query: 77 RPDHEGG 84
           P+   G
Sbjct: 69 APNSGAG 75

[Close]

BLAST of Cla021241 vs. TrEMBL
Match: A0A0B2RB43_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_005103 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 4.6e-06
Identity = 32/59 (54.24%), Postives = 42/59 (71.19%), Query Frame = 1


Query: 18 EETEPDSELEELELEVKQMAQRILHYRSTLSAQLKSSFFSLLESSRP-LAVGASESGIS 76
          +E E D ELE LE ++KQMA +IL YR+TL  QL S+  S+L++ RP L+ GASE  IS
Sbjct: 10 DEAEEDLELERLESDLKQMAHKILDYRTTLPDQLNSTLRSILDAQRPFLSPGASEQNIS 68

[Close]

BLAST of Cla021241 vs. NCBI nr
Match: gi|449432158|ref|XP_004133867.1| (PREDICTED: uncharacterized protein LOC101223085 [Cucumis sativus])

HSP 1 Score: 142.5 bits (358), Expect = 3.5e-31
Identity = 74/81 (91.36%), Postives = 77/81 (95.06%), Query Frame = 1


Query: 1  MSPDKPGEDAGVSGFESEETEPDSELEELELEVKQMAQRILHYRSTLSAQLKSSFFSLLE 60
          MSPDKPGEDAGVSGFE EETEPDSELEELELEV+QMAQRILHYRSTLSAQ+KSSF SLLE
Sbjct: 1  MSPDKPGEDAGVSGFEPEETEPDSELEELELEVQQMAQRILHYRSTLSAQIKSSFCSLLE 60

Query: 61 SSRPLAVGASESGISARPDHE 82
          SSRPLA+ ASE GISARPDHE
Sbjct: 61 SSRPLAI-ASEPGISARPDHE 80

[Close]

BLAST of Cla021241 vs. NCBI nr
Match: gi|659075272|ref|XP_008438056.1| (PREDICTED: uncharacterized protein LOC103483278 [Cucumis melo])

HSP 1 Score: 133.3 bits (334), Expect = 2.1e-28
Identity = 70/81 (86.42%), Postives = 75/81 (92.59%), Query Frame = 1


Query: 1  MSPDKPGEDAGVSGFESEETEPDSELEELELEVKQMAQRILHYRSTLSAQLKSSFFSLLE 60
          MS DKPGEDAGVSGFESEETEPDSELEELELEV+QMAQRILHYRST+ A++KSSF SLLE
Sbjct: 1  MSSDKPGEDAGVSGFESEETEPDSELEELELEVQQMAQRILHYRSTMWAEIKSSFCSLLE 60

Query: 61 SSRPLAVGASESGISARPDHE 82
          SSRPLA+ ASE GISARP HE
Sbjct: 61 SSRPLAI-ASEPGISARPYHE 80

[Close]

BLAST of Cla021241 vs. NCBI nr
Match: gi|645254168|ref|XP_008232913.1| (PREDICTED: uncharacterized protein LOC103331999 [Prunus mume])

HSP 1 Score: 63.2 bits (152), Expect = 2.7e-07
Identity = 32/69 (46.38%), Postives = 46/69 (66.67%), Query Frame = 1


Query: 16 ESEETEPD-SELEELELEVKQMAQRILHYRSTLSAQLKSSFFSLLESSRPLAVGASESGI 75
          +  E+ PD  ELE LE EVK+MA++IL YR+TL  QLK++F S+  + +PL +  S+ G 
Sbjct: 7  QGSESGPDPEELEVLECEVKEMAEKILEYRATLPDQLKNTFASIFAAQKPLFLNGSDPGT 66

Query: 76 SARPDHEGG 84
          S  P+ E G
Sbjct: 67 SGAPNSEAG 75

[Close]

BLAST of Cla021241 vs. NCBI nr
Match: gi|743789359|ref|XP_011036148.1| (PREDICTED: uncharacterized protein LOC105133741 isoform X2 [Populus euphratica])

HSP 1 Score: 63.2 bits (152), Expect = 2.7e-07
Identity = 37/64 (57.81%), Postives = 46/64 (71.88%), Query Frame = 1


Query: 2  SPDKPGEDAGVSGFESEETEPDSELEELELEVKQMAQRILHYRSTLSAQLKSSFFSLLES 61
          SP+KP      SGFE EE E + +LE+LE EVKQMA+RIL YR+TL  QLK++  SLL S
Sbjct: 12 SPEKPE-----SGFEEEEEEVE-KLEKLETEVKQMAKRILEYRTTLPDQLKTTVASLLSS 69

Query: 62 SRPL 66
           RP+
Sbjct: 72 QRPV 69

[Close]

BLAST of Cla021241 vs. NCBI nr
Match: gi|645254157|ref|XP_008232907.1| (PREDICTED: uncharacterized protein LOC103331995 isoform X1 [Prunus mume])

HSP 1 Score: 63.2 bits (152), Expect = 2.7e-07
Identity = 32/69 (46.38%), Postives = 46/69 (66.67%), Query Frame = 1


Query: 16 ESEETEPD-SELEELELEVKQMAQRILHYRSTLSAQLKSSFFSLLESSRPLAVGASESGI 75
          +  E+ PD  ELE LE EVK+MA++IL YR+TL  QLK++F S+  + +PL +  S+ G 
Sbjct: 7  QGSESGPDPEELEVLECEVKEMAEKILEYRATLPDQLKNTFASIFAAQKPLFLNGSDPGT 66

Query: 76 SARPDHEGG 84
          S  P+ E G
Sbjct: 67 SGAPNSEAG 75

The following BLAST results are available for this feature:

BLAST of Cla021241 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L8X5_CUCSA	2.4e-31	91.36	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G122450 PE=4 SV=1	[more]
A0A0L9U2Z9_PHAAN	3.5e-06	50.82	Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan03g052700 PE=4 SV=1	[more]
A0A0S3RSU2_PHAAN	3.5e-06	50.82	Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.04G086100 PE=...	[more]
M5X3C8_PRUPE	4.6e-06	44.78	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa018011mg PE=4 SV=1	[more]
A0A0B2RB43_GLYSO	4.6e-06	54.24	Uncharacterized protein OS=Glycine soja GN=glysoja_005103 PE=4 SV=1	[more]

BLAST of Cla021241 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449432158\|ref\|XP_004133867.1\|	3.5e-31	91.36	PREDICTED: uncharacterized protein LOC101223085 [Cucumis sativus]	[more]
gi\|659075272\|ref\|XP_008438056.1\|	2.1e-28	86.42	PREDICTED: uncharacterized protein LOC103483278 [Cucumis melo]	[more]
gi\|645254168\|ref\|XP_008232913.1\|	2.7e-07	46.38	PREDICTED: uncharacterized protein LOC103331999 [Prunus mume]	[more]
gi\|743789359\|ref\|XP_011036148.1\|	2.7e-07	57.81	PREDICTED: uncharacterized protein LOC105133741 isoform X2 [Populus euphratica]	[more]
gi\|645254157\|ref\|XP_008232907.1\|	2.7e-07	46.38	PREDICTED: uncharacterized protein LOC103331995 isoform X1 [Prunus mume]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
WMU42650	watermelon EST collection version 2.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla021241	Cla021241.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
WMU42650	WMU42650	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	unknown	Coil	Coil	coord: 26..46 scor
None	No IPR available	PANTHER	PTHR36045	FAMILY NOT NAMED	coord: 16..66 score: 4.7
None	No IPR available	PANTHER	PTHR36045:SF1	SUBFAMILY NOT NAMED	coord: 16..66 score: 4.7

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla021241	Cla97C05G081970	Watermelon (97103) v2	wmwmbB206
Cla021241	Csa3G122450	Cucumber (Chinese Long) v2	cuwmB233
Cla021241	MELO3C006115	Melon (DHL92) v3.5.1	mewmB461
Cla021241	ClCG05G001580	Watermelon (Charleston Gray)	wcgwmB286
Cla021241	CSPI03G08830	Wild cucumber (PI 183967)	cpiwmB231
Cla021241	Cucsa.258320	Cucumber (Gy14) v1	cgywmB479
Cla021241	CmaCh14G020340	Cucurbita maxima (Rimu)	cmawmB242
Cla021241	CmaCh06G010630	Cucurbita maxima (Rimu)	cmawmB802
Cla021241	CmoCh14G020930	Cucurbita moschata (Rifu)	cmowmB231
Cla021241	CmoCh06G010840	Cucurbita moschata (Rifu)	cmowmB794
Cla021241	Lsi05G020340	Bottle gourd (USVL1VR-Ls)	lsiwmB365
Cla021241	Cp4.1LG08g01160	Cucurbita pepo (Zucchini)	cpewmB844
Cla021241	CsGy3G008910	Cucumber (Gy14) v2	cgybwmB217
Cla021241	MELO3C006115.2	Melon (DHL92) v3.6.1	medwmB447
Cla021241	Carg24641	Silver-seed gourd	carwmB0378
Cla021241	Carg21006	Silver-seed gourd	carwmB0487
Cla021241	CsaV3_3G008970	Cucumber (Chinese Long) v3	cucwmB239
Cla021241	Bhi01G000260	Wax gourd	wgowmB204

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla021241	Watermelon (97103) v1	wmwmB118
Cla021241	Cucurbita maxima (Rimu)	cmawmB798
Cla021241	Cucurbita moschata (Rifu)	cmowmB793
Cla021241	Melon (DHL92) v3.5.1	mewmB470
Cla021241	Cucurbita pepo (Zucchini)	cpewmB613
Cla021241	Cucurbita pepo (Zucchini)	cpewmB845