CmaCh06G010630 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh06G010630
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Coffea canephora DH200=94 genomic scaffold, scaffold_35
Location	Cma_Chr06 : 7141035 .. 7143312 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CTCTCTCTCTCTCTCTTCTCTTGCAGTCGATTTCACACGTTGAACATTCAAATTTCGAAATCCATTGCCCTCCGAAATCCCAAGATTCGCATTCGTTTCGAACACACAACTGAATTTCGTTGCTCTGAACTTCCAATCCTATTTCTGTAGAAACTGGCTGTGGATGTAAACTGAAACATGTCCTTCGACAAACCCGGTGAAGACACCGGGGTTTCTGGATTTGAATCCGAAGAAATGGAGCCCGATTCTGAGCATGAGGAGCTCGAGCTTGAAGTAAACCAAATGGCTCAGAGGATTCTTCACTACAGATCCACTCTCTCTGCTCAACTAAAGTCCTCCTTCATTTCGTTACTCGAGTCCGCGAGGCCTGTTGCCTTCGGAGCCTCGGAGCCGGGAATATCTGTTCCTCCGAACCATGAAGGTGGGTTGTGTTTTCTTTCTTTCTCCGAACTTGTAGATTTGAATATCTGTTCCTCCGAACCATGAAGGTGGGTTGTGTTTTCTTTCTTTCTCCGAACTTGTAGATTTTCTCTGTGAAAATGAATTGAAAGAAATCTGAAATTATGCTGTTCTATTAGGTATATGCTTCTTTGAAGTGAATGAGTTTGCTGTTTGGGAATTCTGTGCCAAGGGGTTGGTTTCTAAACGCTTTTTGATTTGAAGTGAATGAGTTTGCTGTTTGGGAATTCTGTGCCAAGGGGTTGGTTTCTAAACGCTTTTTGAAGTGTTTAATTAGGGCGAATGGAATACAATTAGTTCTAATTTTTTTGATCTGGAATTGCTACCTGTTCTTCTCACTGATTTGATTTGCAATTCTGGTTCAGGATGGGGGGATTAAGTTCAAATACTCCTATTTTGTTGGCTTTTGAGCTAAATTTATGTATCCAACGGCAGTTTTTGAGCATGCCTTTCTGGAGCATTCAGCTTAAGATGTAGAATGACTATTTTAGGACTAGTGAACTGTAGTGAACTGTTTCAGTGTGCAATATTTTTTAAGTACTTAGAAAGTCATTTCAATTGGGTCTTTCATTTATCGATTTCATCGTATATGAGAAGCTCGTTGATATAATTATATTTCATTCAATTGGGTCTTTCATTTATCGATTTCATCGTATATGAGAAGCTCGTTGATATAATTATATTTCATTTTTTTGTTCAGTTTTTCTTGTTCTTTTCCTGTAGTGTTCCAAACTGTATTTCTGTTTCATTTCCTTCTGTCTTGTCCTTCTGTTGGTTGCAGTTTTTAAAATTGTTGACAATTGCAAAAAAATTGTTTTCCTTCTGTCTTGTCCTTCTGTTGGTTGCAGTTTTTAAAATTGTTGACAATTGCAAAAAAATTGTTGATTGTGATGATACTTCAATGTGTTACGTTTACAATCTATGTTTCAAGTGAGTTTAGTAAGGCTGCTCATCACTACTTGTGGATCTTTTTGGCCAATTCTGAAAATTACACAAAGTGTTTCACTAGGTAGGTTGTTCTTGCTGTTTCGGGGTGAGTGTATCGACTTTAGTAGTTATTCCTTTCGGTAGCAAATATTCTAATGCAGCTATTGTATCACAATTTGAAAAACAAAGTCAAAGTTCTTACTCTAAGCTAACGAATTTCGGCTGTCCTATGATAGCTCCGAGTCAGAGAATTCTAGGACTTTTCAAGACAAGGATTTAGCCAGATGGTTAGCTTTTTCGTGTACCCTTAATCTTATTATTTTTGTGACTCTAGTGCCTCTTGTATTTATGTTGATCGAGGTCCTTTTTTTCGTGAAATAGCTTTTAGCTTTTAGGGTGGATTGCTCATTCCCCTGCTTTTGTGTTCCTTTTGATTCTCTATTTCAATGGTCTGCAGAAGTCTTTATGCCATCTCTACTTTAGTTATATTATATTTATGGTTCGTGAGCGCTTCGATAATTCGTGCATGTTCTGATTGATTACGCCAACCTACGATCTTTTTCAAAAAGCAAATATTAACCTTTTGGACTCGCATGTTCTGATTGATTACGCCAACCTACGATCTTTTTCAAAAAGCAAATATTAACCTTTTGGACTCGATCGTGAGTTTACTCCGAGGATGTACTTGTGTGACAATGTTAGTGTGTCTGGTGGTAATGAAGAGTTATTCTGATGATACATATAGGATTTATATACTCAGCTGTACGGTCTGACTGACAAATCATTTTGTTATGCAGATGATGAACAACAAATCACAAGAGGTGAAGGAACGGTCCTTCATGACGAGGGTTTAGAAACAGAAAAGAAGATACAATTGCTCAAAGATAAGTGA

mRNA sequence

CTCTCTCTCTCTCTCTTCTCTTGCAGTCGATTTCACACGTTGAACATTCAAATTTCGAAATCCATTGCCCTCCGAAATCCCAAGATTCGCATTCGTTTCGAACACACAACTGAATTTCGTTGCTCTGAACTTCCAATCCTATTTCTGTAGAAACTGGCTGTGGATGTAAACTGAAACATGTCCTTCGACAAACCCGGTGAAGACACCGGGGTTTCTGGATTTGAATCCGAAGAAATGGAGCCCGATTCTGAGCATGAGGAGCTCGAGCTTGAAGTAAACCAAATGGCTCAGAGGATTCTTCACTACAGATCCACTCTCTCTGCTCAACTAAAGTCCTCCTTCATTTCGTTACTCGAGTCCGCGAGGCCTGTTGCCTTCGGAGCCTCGGAGCCGGGAATATCTGTTCCTCCGAACCATGAAGATGATGAACAACAAATCACAAGAGGTGAAGGAACGGTCCTTCATGACGAGGGTTTAGAAACAGAAAAGAAGATACAATTGCTCAAAGATAAGTGA

Coding sequence (CDS)

ATGTCCTTCGACAAACCCGGTGAAGACACCGGGGTTTCTGGATTTGAATCCGAAGAAATGGAGCCCGATTCTGAGCATGAGGAGCTCGAGCTTGAAGTAAACCAAATGGCTCAGAGGATTCTTCACTACAGATCCACTCTCTCTGCTCAACTAAAGTCCTCCTTCATTTCGTTACTCGAGTCCGCGAGGCCTGTTGCCTTCGGAGCCTCGGAGCCGGGAATATCTGTTCCTCCGAACCATGAAGATGATGAACAACAAATCACAAGAGGTGAAGGAACGGTCCTTCATGACGAGGGTTTAGAAACAGAAAAGAAGATACAATTGCTCAAAGATAAGTGA

Protein sequence

MSFDKPGEDTGVSGFESEEMEPDSEHEELELEVNQMAQRILHYRSTLSAQLKSSFISLLESARPVAFGASEPGISVPPNHEDDEQQITRGEGTVLHDEGLETEKKIQLLKDK

Homology

[Close]

BLAST of CmaCh06G010630 vs. TrEMBL
Match: A0A0A0L8X5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G122450 PE=4 SV=1)

HSP 1 Score: 158.7 bits (400), Expect = 4.2e-36
Identity = 90/112 (80.36%), Postives = 96/112 (85.71%), Query Frame = 1


Query: 1   MSFDKPGEDTGVSGFESEEMEPDSEHEELELEVNQMAQRILHYRSTLSAQLKSSFISLLE 60
           MS DKPGED GVSGFE EE EPDSE EELELEV QMAQRILHYRSTLSAQ+KSSF SLLE
Sbjct: 1   MSPDKPGEDAGVSGFEPEETEPDSELEELELEVQQMAQRILHYRSTLSAQIKSSFCSLLE 60

Query: 61  SARPVAFGASEPGISVPPNHEDDEQQITRGEGTVLHDEGLETEKKIQLLKDK 113
           S+RP+A  ASEPGIS  P+HEDDE Q TRGE T LH+EGLET KKIQL+KDK
Sbjct: 61  SSRPLAI-ASEPGISARPDHEDDE-QTTRGEDTNLHEEGLETAKKIQLIKDK 110

[Close]

BLAST of CmaCh06G010630 vs. TrEMBL
Match: M5X3C8_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa018011mg PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 9.1e-07
Identity = 40/96 (41.67%), Postives = 57/96 (59.38%), Query Frame = 1


Query: 17  SEEMEPDSEHEELELEVNQMAQRILHYRSTLSAQLKSSFISLLESARPVAFGASEPGISV 76
           SE      E E LE EV +MA++IL YR+TL  QLK++F S+L   +PV    S+PG S 
Sbjct: 9   SESGHDPEELEVLECEVKEMAEKILEYRATLPDQLKNTFASILAVQQPVFLNGSDPGTSG 68

Query: 77  PPNHEDDEQQITRGEGTVLHDEGLETEKKIQLLKDK 113
            PN      Q+   +G +L D G +T +K++L +DK
Sbjct: 69  APN--SGAGQVASNKGALLAD-GDQTSEKLRLFRDK 101

[Close]

BLAST of CmaCh06G010630 vs. NCBI nr
Match: gi|449432158|ref|XP_004133867.1| (PREDICTED: uncharacterized protein LOC101223085 [Cucumis sativus])

HSP 1 Score: 158.7 bits (400), Expect = 6.0e-36
Identity = 90/112 (80.36%), Postives = 96/112 (85.71%), Query Frame = 1


Query: 1   MSFDKPGEDTGVSGFESEEMEPDSEHEELELEVNQMAQRILHYRSTLSAQLKSSFISLLE 60
           MS DKPGED GVSGFE EE EPDSE EELELEV QMAQRILHYRSTLSAQ+KSSF SLLE
Sbjct: 1   MSPDKPGEDAGVSGFEPEETEPDSELEELELEVQQMAQRILHYRSTLSAQIKSSFCSLLE 60

Query: 61  SARPVAFGASEPGISVPPNHEDDEQQITRGEGTVLHDEGLETEKKIQLLKDK 113
           S+RP+A  ASEPGIS  P+HEDDE Q TRGE T LH+EGLET KKIQL+KDK
Sbjct: 61  SSRPLAI-ASEPGISARPDHEDDE-QTTRGEDTNLHEEGLETAKKIQLIKDK 110

[Close]

BLAST of CmaCh06G010630 vs. NCBI nr
Match: gi|659075272|ref|XP_008438056.1| (PREDICTED: uncharacterized protein LOC103483278 [Cucumis melo])

HSP 1 Score: 157.9 bits (398), Expect = 1.0e-35
Identity = 88/112 (78.57%), Postives = 96/112 (85.71%), Query Frame = 1


Query: 1   MSFDKPGEDTGVSGFESEEMEPDSEHEELELEVNQMAQRILHYRSTLSAQLKSSFISLLE 60
           MS DKPGED GVSGFESEE EPDSE EELELEV QMAQRILHYRST+ A++KSSF SLLE
Sbjct: 1   MSSDKPGEDAGVSGFESEETEPDSELEELELEVQQMAQRILHYRSTMWAEIKSSFCSLLE 60

Query: 61  SARPVAFGASEPGISVPPNHEDDEQQITRGEGTVLHDEGLETEKKIQLLKDK 113
           S+RP+A  ASEPGIS  P HEDDE Q TRGE T+LH+EGLET KKIQL+KDK
Sbjct: 61  SSRPLAI-ASEPGISARPYHEDDE-QTTRGEDTILHEEGLETAKKIQLMKDK 110

[Close]

BLAST of CmaCh06G010630 vs. NCBI nr
Match: gi|1009142331|ref|XP_015888666.1| (PREDICTED: uncharacterized protein LOC107423595, partial [Ziziphus jujuba])

HSP 1 Score: 65.5 bits (158), Expect = 6.9e-08
Identity = 45/100 (45.00%), Postives = 62/100 (62.00%), Query Frame = 1


Query: 13  SGFESEEMEPDSEHEELELEVNQMAQRILHYRSTLSAQLKSSFISLLESARPVAFGASEP 72
           SGFE    +P+ E + LE+EV +MAQ+ILHYR+TL  QLK + +S+L + RPV    S+P
Sbjct: 22  SGFEGGS-DPE-ELDRLEMEVKEMAQKILHYRATLPDQLKDTLVSVLAAQRPVLPHGSDP 81

Query: 73  GISVPPNHEDDEQQITRGEGTVLHDEGLETEKKIQLLKDK 113
                P+ +    Q+    G +L +E  ET KKIQLLK K
Sbjct: 82  ----CPSGDPKPGQVISNNGALLAEEDQETAKKIQLLKAK 115

[Close]

BLAST of CmaCh06G010630 vs. NCBI nr
Match: gi|1009172616|ref|XP_015867369.1| (PREDICTED: uncharacterized protein LOC107404887 [Ziziphus jujuba])

HSP 1 Score: 63.9 bits (154), Expect = 2.0e-07
Identity = 45/100 (45.00%), Postives = 61/100 (61.00%), Query Frame = 1


Query: 13  SGFESEEMEPDSEHEELELEVNQMAQRILHYRSTLSAQLKSSFISLLESARPVAFGASEP 72
           SGFE    +P+ E + LE+EV +MAQ+ILHYR+TL  QLK +  S+L + RPV    S+P
Sbjct: 22  SGFEGGS-DPE-ELDRLEMEVKEMAQKILHYRATLPNQLKDTLASVLAAQRPVLPHGSDP 81

Query: 73  GISVPPNHEDDEQQITRGEGTVLHDEGLETEKKIQLLKDK 113
                P+ +    Q+    G +L +E  ET KKIQLLK K
Sbjct: 82  ----CPSGDPKPGQVISNNGALLAEEDQETAKKIQLLKAK 115

[Close]

BLAST of CmaCh06G010630 vs. NCBI nr
Match: gi|596027393|ref|XP_007219245.1| (hypothetical protein PRUPE_ppa018011mg [Prunus persica])

HSP 1 Score: 61.2 bits (147), Expect = 1.3e-06
Identity = 40/96 (41.67%), Postives = 57/96 (59.38%), Query Frame = 1


Query: 17  SEEMEPDSEHEELELEVNQMAQRILHYRSTLSAQLKSSFISLLESARPVAFGASEPGISV 76
           SE      E E LE EV +MA++IL YR+TL  QLK++F S+L   +PV    S+PG S 
Sbjct: 9   SESGHDPEELEVLECEVKEMAEKILEYRATLPDQLKNTFASILAVQQPVFLNGSDPGTSG 68

Query: 77  PPNHEDDEQQITRGEGTVLHDEGLETEKKIQLLKDK 113
            PN      Q+   +G +L D G +T +K++L +DK
Sbjct: 69  APN--SGAGQVASNKGALLAD-GDQTSEKLRLFRDK 101

The following BLAST results are available for this feature:

BLAST of CmaCh06G010630 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmaCh06G010630 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L8X5_CUCSA	4.2e-36	80.36	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G122450 PE=4 SV=1	[more]
M5X3C8_PRUPE	9.1e-07	41.67	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa018011mg PE=4 SV=1	[more]

BLAST of CmaCh06G010630 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CmaCh06G010630 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449432158\|ref\|XP_004133867.1\|	6.0e-36	80.36	PREDICTED: uncharacterized protein LOC101223085 [Cucumis sativus]	[more]
gi\|659075272\|ref\|XP_008438056.1\|	1.0e-35	78.57	PREDICTED: uncharacterized protein LOC103483278 [Cucumis melo]	[more]
gi\|1009142331\|ref\|XP_015888666.1\|	6.9e-08	45.00	PREDICTED: uncharacterized protein LOC107423595, partial [Ziziphus jujuba]	[more]
gi\|1009172616\|ref\|XP_015867369.1\|	2.0e-07	45.00	PREDICTED: uncharacterized protein LOC107404887 [Ziziphus jujuba]	[more]
gi\|596027393\|ref\|XP_007219245.1\|	1.3e-06	41.67	hypothetical protein PRUPE_ppa018011mg [Prunus persica]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh06G010630.1	CmaCh06G010630.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR36045	FAMILY NOT NAMED	coord: 16..112 score: 1.1

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh06G010630	Cucsa.258320	Cucumber (Gy14) v1	cgycmaB0723
CmaCh06G010630	Cla021241	Watermelon (97103) v1	cmawmB802
CmaCh06G010630	Csa3G122450	Cucumber (Chinese Long) v2	cmacuB828
CmaCh06G010630	MELO3C006115	Melon (DHL92) v3.5.1	cmameB769
CmaCh06G010630	ClCG05G001580	Watermelon (Charleston Gray)	cmawcgB740
CmaCh06G010630	CSPI03G08830	Wild cucumber (PI 183967)	cmacpiB841
CmaCh06G010630	CmoCh06G010840	Cucurbita moschata (Rifu)	cmacmoB829
CmaCh06G010630	CmoCh14G020930	Cucurbita moschata (Rifu)	cmacmoB794
CmaCh06G010630	Lsi05G020340	Bottle gourd (USVL1VR-Ls)	cmalsiB758
CmaCh06G010630	Cp4.1LG08g01160	Cucurbita pepo (Zucchini)	cmacpeB854
CmaCh06G010630	MELO3C006115.2	Melon (DHL92) v3.6.1	cmamedB872
CmaCh06G010630	CsaV3_3G008970	Cucumber (Chinese Long) v3	cmacucB0979
CmaCh06G010630	Cla97C05G081970	Watermelon (97103) v2	cmawmbB861
CmaCh06G010630	Bhi01G000260	Wax gourd	cmawgoB1019
CmaCh06G010630	CsGy3G008910	Cucumber (Gy14) v2	cgybcmaB442
CmaCh06G010630	Carg21006	Silver-seed gourd	carcmaB0684
CmaCh06G010630	Carg24641	Silver-seed gourd	carcmaB0535

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmaCh06G010630	CmaCh14G020340	Cucurbita maxima (Rimu)	cmacmaB280

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh06G010630	Cucumber (Chinese Long) v3	cmacucB0965
CmaCh06G010630	Cucurbita pepo (Zucchini)	cmacpeB833
CmaCh06G010630	Melon (DHL92) v3.6.1	cmamedB863