Cla019768 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla019768
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Ubiquitin TRAF-like (AHRD V1 -- A2Q423_MEDTR); contains Interpro domain(s) IPR004162 Seven in absentia protein
Location	Chr3 : 10091440 .. 10097359 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGAAATTTTCGGTTGGTGGAGAAGAGGATGGGGACGACGGTCCCAGTAGCCCTAGAGGCAAGAGGAAGAGATCCTCTTTTCGAATCAACGCCACTGTTGATTTTCCCTCCCATAACCAACAACGCGAACAACAGGGTTTCAGTTCCGACAAGGAAGAAAGTGAGAACGATGAAGAGGAGACCAAGCGCCATCGAAATCACAAAATTGAGGAACATGTTGGAGGGGACGACGGTAGTAAAAGATCACTCTGCTCGGTTAAGTCGTGTACTAAAAATGTGAAGCCAAATGCCTCCGTTACGATGTTCTTCATTGACCCAGAAGTGTTGGATTGCTCAATTTGCTGCGAACCTTTGAGTATCCCCATCTTCCAGGTCTCTTCCTTTCAACATCTCCATACTTGTTCTGTTTGCAATTAGTTGTATTTTTTTTATTTATTTATTTTTTTTTAATTTTTTTTTTTAATAGTTTACCGTGTTCTGATTCCTAATTGGGGGTTTGATTCGTTGGTTCTGTATTGTATTGGGCTTGGTTCAATTTAGCCTTTAATCCGATAAGATGAAATGGAAGCCATAAGTTTGACATGTAAAAAGGAAAGAAGTCCTGCGCTGATCGTGCTTTGTGTATAATTGGGAAAGCTGGTTCGAGAAGAAACATTGAAATCCTTAATAACCTCCCATCAACTTGAGGCGACAATCAAGCTAAATGTGCTTTGTGTGAGCAAAAAAAATGGATTATTAGCTTAAGAAATAGCAGAATTTTATCAAACCAGATAGCTGGATTATCTTTTGAGTAGAAAATGATCATACAAATGTTGAGGAACCACATATACCTCCACAAGTTATAGCTGAGGAAAAATATTTAACCTCAGTGGATGAATGCGAGATTGTTTGTTGTTACTTAGACCGTTAGATCGGACTAGAACTAATAAAACAAGGCTGGGGTCAAATACATATCAAGTGTGTTCAAAAGCTGCCAATAACTGGATGGATCATTGAACGGAGAAGACTAAGCATCTAAATCAAGCTTAACTGAACTGACTGGAGCACCAGTCATTCAGATTTTAGACCTAAAGATTAAGACCAATTTTCCCCCAACCAGATTCATTTGTTTTTGTTTTTGAACTAAGCTCCGGTGCTCCACTTACCTCTTGAAAAATTGAAAACTCATCTCTGGAATTATGGAGACAGTAGTGTACATACATCGATCAGTGGTCTCCTGTTCAAAAAATTTATTCATACTGATCCTCAATTTGAATCTTGTTTGCATGGTGGCATTATGAATAGAATTAATAGCAGCAGAAAGTAAGGTATCCTTAAAATTATAGGAAGAATGCTTGTGATCAGTGAGTTTGCATGGCTGACCAGATGCAGATGATGAGGCAGTTGTTTGGGAATCTAGAAATAAAGCAGTCGATGATTATAAGTTTGGGAAGATAAGGATAAGAAGTTTCAATGGAAAAATGAAGATGAAGAAAAGAATTGCTAGGATGAAGGTTGAGTTGCAAAAATTGAATGGCACGTACTATTGTGATGACAAGACCCATTTACATGATGATTGGTTGAGAGGTGATCCATGAAGATAGTATGTGTTAGGCCACCTATATTGCTTACTTATAGTAGAAAGGGTAACAAAGGAAAAGGGCTGGTGTATGGGAGTGTGGCTGCTGAGAGAAAGGGGTCATTGGGTTAGTTATTTTATTTATGTTGTATGTACGGGGAAGGTTATAAGGGAATGATAGGGAAGTTATTAGGAGTTAGTTTTTGGTGGTTGTTTCCATTGTGGAAAGGGTTGTGGAGGGGACAACTTTGGTTCCCTAGTGTTCTTGTAGCCTTAGGGCATCTTTTCATCTTTGAATCAATAAAGACTTGTAGTAGTTTCTTATCAGTATGCTAAATCCTTTTGATGCACAGATGAAGCATTGATTAGAGGAGTTAAAAATGAGGGGCTTGTAGATATTTGGAAGATTGATGGATGGGTGGATAGTAGGGGGTTGCTCACTTAAGTTTGATAATTAGTGTCTTAAAAAACACGGAAAAATTGAGATTGAACATCCAAATCAATGGAGATTAGTGGTGCAAGTTGTGCTTGGCCATTCCTCAAGACTTTTGGCTAACATAAAATTTTCCATAGAAGGTATTCTAATGAGGTTGCTTATGTTCATAAAGATTTTGAAGCGTCGCTTGATTGTGAAAGAAATTTGAAGATGATTCCATTTCCAGCTACTCTACTGCGCAGTTCAAGAGTCCTTTCTTTGGCTTTAAACCATGCACAATATGATCGTCCCTCATGCATGGGTAGATGTAAGAATTCAGAATGGAGGCCATGAATAAGTGTATGTATAAGGATCTCCTCAGCTTCAATATGAACTTAGACCAGCTAATTTATCTGAGTTTCTTTAATATGCTAAATAAATGGATCAGATATCTGATTTTGCCTCCTTTTAATGGAATAGAAATCATACTGCAATTCTAGAACAATTGATCTCGGTAAAGATGAGTACATCTTTTCTACTGACTGCCAGAGTTCTCGATAAGTTTTGAGTCTAGAAATGGGAACCTGAGCTCCTCCTCCCCCGTTAGCATGGTTTTGTTTTCTGGTGGGGGGTGTTCAGCTTATCAATGGAGAGGGGAACATCATACAGAGTATATGGGTGAAAGTTAAAGGATTTGATATATGTCTGTTTTCTCTGATCAGCCTTAGGATGATATTTTTGCATATTAAGTTATTAAGTGTCCGTTTGATAACGTTTCCATTTCCTGTTTCTGTTTCTCACTTTTTAAGTAATGGACTTGTTTGATAACTGTTCCCGTCTTTTGTTTCTAAATTTTAAGAAACATTTGTAAGAAAATGGGCAAAAATTGAGAAATAACAAAAAGTAGTTTCTTCTGTTTCTATTTTTATTTTACTGTTCTCTCAAGTAATCATTCTCAACTTTTGGTCTATTGGTATTAGACGGTCATGGTAATTAGTTTCCTTTTGCCAGTCAGGAGTTTGAATCCCACCTGAAGCAATTTTTTTTAACCTTTTCGATTTTTATTTTTATTTTTTGAAGAATTTGTTTTTTTTCATTAAATTCCTTTTTTTTGGTTTTTTTATTCATTTTGTTATTTACATAAATAATTCTCCCATATTTATATGTGATGTTTTCCAAAATAGAAAAACTACTAAAAATAATTACAAATATAGCAAAATTTAACTTTGTATCTATGATAGACTTAGATAGACCTAGATAGACATTTATCACTTTACCAGATAGACATCGATAGGTCTATCACGGTCTATCAGAGATAGAAAGTAAAATTTTGCTATATTTGTAAATAATTTGATATTTTTTCTATTTATAATAATTTTCTTATTTATATTTTATTTTAATTTTGAATTTTAAAATTCTCCAATATTTAGATTTATATATTATTTTAATTTTCAATATGTATATTAATTCTTTTAAAATTTGAACTTTTGAGCATTAAATTTTGTAATATGCGTGTTTATATATTATTTTAATTCTAATATTTTTAGAGTATAGATGAAACTGAGTAGAATTTTCAATATATAAATTTTGTTGACTAAGACATTCATTAGCTTAACTTTAATATTTTACAATCACGACATTTATATAATTATATAATTAAGTTGGATTTGACTTGACATCATTTAAGATAAATGAGTTGAGTTAGAAATGATAGTGCCGATCAAATTTAGACAACATATGAAGGATATGATACAACTTTGTTATTATATTTAGTTATCATCTAGACTTACTTCTATTAAATGATATAAACTTTTGATAATATCATTTTCGATGTTTAATGTATGACATATATATATATATATATATTTTTATATACATATATTATATTGTTACCAAAAAGAAAGAAAAAAAGAAAGAAAAAAACAAGAAATAGTTATCAAACAACTTTTTGTTTTTGATTTTTTTCAAGAAACAGGAAACAGGAACAGTTATCAAATGTAGTTCTGTTTCTTGTTCTCTAGAAAGAAACGGGAAACAAGAACGTTATCAAATGGGACCTAACTGATTGCCTTTTCCAAGTGCATTGGAAATTTAGACCACAGATTCCATAATTTTCTTGCTTCACTTCATCTATAGTATTAATGAGTACTGTTTGTTTTCTTCTTGGAGAAAAATTTCTGTTCAAGCTGTAAACAGTCTTGCAAAAAATATTTTTAATGCTGCATGATTTTTCAACCGAAAGAATCCAATTGAAAATTTGTAGTTTTGCTCTTCACTCTCTATTATTTGTATCTTTCTTCATATCTGAATTTGATTTGGTTGAGGTGTAATTTCATGTGTTCCTCTAAAGTTGTGTCCGGATGAGGCAATGGTTCCACAGGAGCTTTTAACATCGGCTTTGTGGAAGAACGTGGGGATAGCAATATAAATTTTAGTACAAAAGGATATTCTTAAAAGTCAGTATGACGCTAGTGTATGGGAAGAAAACATGACATATCAATGACCGGTTAGGTTACTACAAAAATATAAAGGCCATAGAGTAAAGGTTATTTGGCCTGACATCCAATTCCGCTCGCCTGATGTGAAAAGTAAAGGTGATATTTTATAGAATTTGATAGAGACTAGAAAAATGATAATTTGTAGAATTAGAAAATGTGGAAAGATCTGGTAACTAGAGGAACTTACGATCTCCCCCTTGAGTAAGCCTAAATTACTAAACCATCATTTACCTTCATCGGTTCATCCTCATTAACAGACTCCTTGGCCAAGGATTAACATCCCTTAGCGCTATAATAATATTCTAACTGAATTGTTACTGCACAATGCACATCTTAAGTGTGAGAATGAAGTTATAACTTTTAAGCAGATGAAAATTTTTCTGAGAACAGAAAATCACATGGACATTGGCGCATGCCTTCAACTCTTATACCAGTCCATAAAACAGTCTAAAGGATCAGAACATGAGCACTGTGGACATTATTGTTTGTCCCTAATGTATGACTTGTGCACTGAAAGAAAAAATGAAAAATCGCATAAGAAGATTTTGATTGTTTAGTTTACATCTACTTAGTTTCCTTGAGGTCTTGAGTTTTGAGGTGAACTGGTAGCTTCCTCTTTAACCTCTGCCAATTCTTTCAGCTAAAGTGGTCATACATTCGGTGTAAGTTAGAATTGGTATTTAATAATTGCTCATTTTGTTCTCTCATATCACATATATCAATAGTATGTCGACTTAACTAGTCTTTTTTCATTTATTGCATGAAATTCAGTGTGAGAATGGACATATTGCATGCTCTTCCTGCTGCAACAAACTTAAGAATAAATGTGCAACCTGCTCTTGGCCTATTGGCTATAATCGTTGTCGGGCCGTTGAGAAGGTTCTTGAATCCATTAAATTTCCCTGCAAACAATCAAAGTTTGGATGCAAGGAGATCGTTGGTTATGGTAATGAAAGTGACCACGAAAAAACTTGCCTATATGCCCCTTGTTTATGCCCCCATTCTGATTGCAACTTTATGGCCTCATCTAAGCAGTTATCATTACACTTTAGCAGTAAACATACAAACTCTGCTACCAACTTCCAGTTCAGTTCTAGCTTCACCATTTTCCTAAAAACTAACGATACTTACCACGTCCTTCAAGAACAAGATGATGGTATTCTTTTTATTCTCAGCAATAGTTTTGAAAATCTGGGAAGTGCTGTTAAAATTTGTTGCCTTCGACCTCCTTCTTTGAAGGAAGCATTTTCTTATGATCTACGTGCAGAAACTCAGGATCTCTCCCTTGTTTTACAATCTTCCATGAAGAACATTCAATCATCATCAGATTGCTGTCGCTCGACGAGGTTTCTTATGATTCCATGTGATTTATTCAGTTCTTCTGGGATGATCAAATTGAATATTTGCATATGGAAAAACGGTTCATCTTCGGTGCGCCATGGATGA

mRNA sequence

ATGGCGAAATTTTCGGTTGGTGGAGAAGAGGATGGGGACGACGGTCCCAGTAGCCCTAGAGGCAAGAGGAAGAGATCCTCTTTTCGAATCAACGCCACTGTTGATTTTCCCTCCCATAACCAACAACGCGAACAACAGGGTTTCAGTTCCGACAAGGAAGAAAGTGAGAACGATGAAGAGGAGACCAAGCGCCATCGAAATCACAAAATTGAGGAACATGTTGGAGGGGACGACGGTAGTAAAAGATCACTCTGCTCGGTTAAGTCGTGTACTAAAAATGTGAAGCCAAATGCCTCCGTTACGATGTTCTTCATTGACCCAGAAGTGTTGGATTGCTCAATTTGCTGCGAACCTTTGAGTATCCCCATCTTCCAGTTATCATTACACTTTAGCAGTAAACATACAAACTCTGCTACCAACTTCCAGTTCAGTTCTAGCTTCACCATTTTCCTAAAAACTAACGATACTTACCACGTCCTTCAAGAACAAGATGATGGTATTCTTTTTATTCTCAGCAATAGTTTTGAAAATCTGGGAAGTGCTGTTAAAATTTGTTGCCTTCGACCTCCTTCTTTGAAGGAAGCATTTTCTTATGATCTACGTGCAGAAACTCAGGATCTCTCCCTTGTTTTACAATCTTCCATGAAGAACATTCAATCATCATCAGATTGCTGTCGCTCGACGAGGTTTCTTATGATTCCATGTGATTTATTCAGTTCTTCTGGGATGATCAAATTGAATATTTGCATATGGAAAAACGGTTCATCTTCGGTGCGCCATGGATGA

Coding sequence (CDS)

ATGGCGAAATTTTCGGTTGGTGGAGAAGAGGATGGGGACGACGGTCCCAGTAGCCCTAGAGGCAAGAGGAAGAGATCCTCTTTTCGAATCAACGCCACTGTTGATTTTCCCTCCCATAACCAACAACGCGAACAACAGGGTTTCAGTTCCGACAAGGAAGAAAGTGAGAACGATGAAGAGGAGACCAAGCGCCATCGAAATCACAAAATTGAGGAACATGTTGGAGGGGACGACGGTAGTAAAAGATCACTCTGCTCGGTTAAGTCGTGTACTAAAAATGTGAAGCCAAATGCCTCCGTTACGATGTTCTTCATTGACCCAGAAGTGTTGGATTGCTCAATTTGCTGCGAACCTTTGAGTATCCCCATCTTCCAGTTATCATTACACTTTAGCAGTAAACATACAAACTCTGCTACCAACTTCCAGTTCAGTTCTAGCTTCACCATTTTCCTAAAAACTAACGATACTTACCACGTCCTTCAAGAACAAGATGATGGTATTCTTTTTATTCTCAGCAATAGTTTTGAAAATCTGGGAAGTGCTGTTAAAATTTGTTGCCTTCGACCTCCTTCTTTGAAGGAAGCATTTTCTTATGATCTACGTGCAGAAACTCAGGATCTCTCCCTTGTTTTACAATCTTCCATGAAGAACATTCAATCATCATCAGATTGCTGTCGCTCGACGAGGTTTCTTATGATTCCATGTGATTTATTCAGTTCTTCTGGGATGATCAAATTGAATATTTGCATATGGAAAAACGGTTCATCTTCGGTGCGCCATGGATGA

Protein sequence

MAKFSVGGEEDGDDGPSSPRGKRKRSSFRINATVDFPSHNQQREQQGFSSDKEESENDEEETKRHRNHKIEEHVGGDDGSKRSLCSVKSCTKNVKPNASVTMFFIDPEVLDCSICCEPLSIPIFQLSLHFSSKHTNSATNFQFSSSFTIFLKTNDTYHVLQEQDDGILFILSNSFENLGSAVKICCLRPPSLKEAFSYDLRAETQDLSLVLQSSMKNIQSSSDCCRSTRFLMIPCDLFSSSGMIKLNICIWKNGSSSVRHG

Homology

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BLAST of Cla019768 vs. Swiss-Prot
Match: SIL10_ARATH (E3 ubiquitin-protein ligase SINA-like 10 OS=Arabidopsis thaliana GN=At5g37930 PE=2 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 5.9e-10
Identity = 44/134 (32.84%), Postives = 60/134 (44.78%), Query Frame = 1


Query: 1   MAKFSVGGEEDGDDGPSSPRGKRKRSSFRINATVDFPSHNQQREQQGFSSDKEESENDEE 60
           MA+FSV G +DG+   ++    RKR           PS ++  E    S      E DE+
Sbjct: 1   MARFSVCGGDDGEGPSNNNHQSRKRQRL--------PSIDENEEDAETSDAGSSGEEDED 60

Query: 61  ETKRHRNHKIEEHVGG--DDGSKRSLCSVKSCTKNVKPNAS-------VTMFFIDPEVLD 120
           ET+        E  G   DD  +  +   +   K V   +S       +++  +DP+VLD
Sbjct: 61  ETQNQGMRPESEDRGSTSDDSDREVVIEERRFGKFVNSQSSSSSKDSPLSVTLLDPDVLD 120

Query: 121 CSICCEPLSIPIFQ 126
           C ICCEPL IPIFQ
Sbjct: 121 CPICCEPLKIPIFQ 126

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BLAST of Cla019768 vs. TrEMBL
Match: A0A0A0KTM5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G418270 PE=4 SV=1)

HSP 1 Score: 133.3 bits (334), Expect = 4.4e-28
Identity = 68/83 (81.93%), Postives = 74/83 (89.16%), Query Frame = 1


Query: 125 QLSLHFSSKHTNSATNFQFSSSFTIFLKTNDTYHVLQEQDDGILFILSNSFENLGSAVKI 184
           QLSLHFS+KHT+SATNF F SSFTI LKT+DTYHVLQEQ DG LFILSNSF+NLG+ VKI
Sbjct: 85  QLSLHFSNKHTDSATNFHFRSSFTICLKTDDTYHVLQEQ-DGFLFILSNSFKNLGNVVKI 144

Query: 185 CCLRPPSLKEAFSYDLRAETQDL 208
           CCL+PP L E FSYDLRAETQDL
Sbjct: 145 CCLQPP-LNETFSYDLRAETQDL 165

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BLAST of Cla019768 vs. TrEMBL
Match: G7KFT5_MEDTR (E3 ubiquitin-protein ligase OS=Medicago truncatula GN=MTR_5g076810 PE=3 SV=2)

HSP 1 Score: 106.7 bits (265), Expect = 4.4e-20
Identity = 60/125 (48.00%), Postives = 80/125 (64.00%), Query Frame = 1


Query: 126 LSLHFSSKHTNSATNFQFSSSFTIFLKTNDTYHVLQEQDDGILFILSNSFENLGSAVKIC 185
           LS H S KH +S   F +  SF + LK+ND   VLQE++DG LFIL+N    LG+AV IC
Sbjct: 69  LSNHVSHKHRDSHIKFSYGGSFIVSLKSNDETIVLQEENDGKLFILNNRTTLLGNAVNIC 128

Query: 186 CLRPPSLKEAFSYDLRAETQDLSLVLQSSMKNIQSSSDCCRSTRFLMIPCDLFSSSGMIK 245
           CL P S +  +SYD+ A +Q   L LQS +KN+Q  +    S+ FL+IP   F+SS  +K
Sbjct: 129 CLGPNSSESEYSYDILASSQICKLKLQSFVKNVQRVALATLSSEFLVIP---FASSEPLK 188

Query: 246 LNICI 251
           L+ICI
Sbjct: 189 LDICI 190

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BLAST of Cla019768 vs. TrEMBL
Match: G7KFP6_MEDTR (E3 ubiquitin-protein ligase OS=Medicago truncatula GN=MTR_5g076370 PE=3 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 9.8e-20
Identity = 58/136 (42.65%), Postives = 79/136 (58.09%), Query Frame = 1


Query: 126 LSLHFSSKHTNSATNFQFSSSFTIFLKTNDTYHVLQEQDDGILFILSNSFENLGSAVKIC 185
           LS HF+ KH +S   F +  SFT+ L +ND   VLQE++DG LF L+NS   LG+AV I 
Sbjct: 139 LSNHFNHKHGDSLIEFSYGHSFTVSLNSNDEAAVLQEENDGKLFTLNNSTMLLGNAVNIS 198

Query: 186 CLRPPSLKEAFSYDLRAETQDLSLVLQSSMKNIQSSSDCCRSTRFLMIPCDLFSSSGMIK 245
           C+   S +  +SYD+ A ++   L   SS KNIQ S+    S+ +LMIP   F SS  ++
Sbjct: 199 CIDVNSSEAGYSYDILARSKTSRLKFHSSPKNIQRSTSATHSSEYLMIPFGYFGSSKPLE 258

Query: 246 LNICIWKNGSSSVRHG 262
           L ICI       + HG
Sbjct: 259 LEICITPKMQIFIAHG 274

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BLAST of Cla019768 vs. TrEMBL
Match: A0A072VIC6_MEDTR (E3 ubiquitin-protein ligase OS=Medicago truncatula GN=MTR_1g046650 PE=3 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 9.8e-20
Identity = 69/175 (39.43%), Postives = 95/175 (54.29%), Query Frame = 1


Query: 84  LCSVKSCTKNVKPNASVTMFFID---PEVLDCSICCEPLSIPIFQ-----LSLHFSSKHT 143
           L S+K    N K      + + D    E     +C  PLS   F      LS HF  KH 
Sbjct: 65  LLSIKMSCSNAKHGCKEKISYTDRKHEEECVYVLCYCPLSGCDFAASSEVLSNHFRHKHG 124

Query: 144 NSATNFQFSSSFTIFLKTNDTYHVLQEQDDGILFILSNSFENLGSAVKICCLRPPSLKEA 203
           +S   F +  SFT+ LK+ND   VLQE++DG LFIL+N    LG+AV +CC+ P S +  
Sbjct: 125 DSIIKFSYGYSFTVSLKSNDEIIVLQEENDGKLFILNNRTTLLGNAVNLCCIGPNSSESN 184

Query: 204 FSYDLRAETQDLSLVLQSSMKNIQSSSDCCRSTRFLMIPCDLFSSSGMIKLNICI 251
           ++YD+ A +Q+  L LQS  KN+Q  +    S+  L+IP   F SS  +KL+ICI
Sbjct: 185 YNYDILARSQNCILKLQSFAKNVQQVTLATLSSELLVIP---FGSSEPLKLDICI 236

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BLAST of Cla019768 vs. TrEMBL
Match: A0A072VHW0_MEDTR (E3 ubiquitin-protein ligase OS=Medicago truncatula GN=MTR_1g046650 PE=3 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 9.8e-20
Identity = 69/175 (39.43%), Postives = 95/175 (54.29%), Query Frame = 1


Query: 84  LCSVKSCTKNVKPNASVTMFFID---PEVLDCSICCEPLSIPIFQ-----LSLHFSSKHT 143
           L S+K    N K      + + D    E     +C  PLS   F      LS HF  KH 
Sbjct: 65  LLSIKMSCSNAKHGCKEKISYTDRKHEEECVYVLCYCPLSGCDFAASSEVLSNHFRHKHG 124

Query: 144 NSATNFQFSSSFTIFLKTNDTYHVLQEQDDGILFILSNSFENLGSAVKICCLRPPSLKEA 203
           +S   F +  SFT+ LK+ND   VLQE++DG LFIL+N    LG+AV +CC+ P S +  
Sbjct: 125 DSIIKFSYGYSFTVSLKSNDEIIVLQEENDGKLFILNNRTTLLGNAVNLCCIGPNSSESN 184

Query: 204 FSYDLRAETQDLSLVLQSSMKNIQSSSDCCRSTRFLMIPCDLFSSSGMIKLNICI 251
           ++YD+ A +Q+  L LQS  KN+Q  +    S+  L+IP   F SS  +KL+ICI
Sbjct: 185 YNYDILARSQNCILKLQSFAKNVQQVTLATLSSELLVIP---FGSSEPLKLDICI 236

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BLAST of Cla019768 vs. NCBI nr
Match: gi|659121126|ref|XP_008460511.1| (PREDICTED: E3 ubiquitin-protein ligase SINA-like 7 [Cucumis melo])

HSP 1 Score: 242.3 bits (617), Expect = 9.6e-61
Identity = 122/136 (89.71%), Postives = 126/136 (92.65%), Query Frame = 1


Query: 125 QLSLHFSSKHTNSATNFQFSSSFTIFLKTNDTYHVLQEQDDGILFILSNSFENLGSAVKI 184
           QLSLHFS+KHTNSATNF FSSSFTI LKTNDTYHVLQEQ DG+LFILSNS ENLGS VKI
Sbjct: 215 QLSLHFSNKHTNSATNFHFSSSFTICLKTNDTYHVLQEQ-DGVLFILSNSSENLGSVVKI 274

Query: 185 CCLRPPSLKEAFSYDLRAETQDLSLVLQSSMKNIQSSSDCCRSTRFLMIPCDLFSSSGMI 244
           CCL+PPSLKE FSYDLRAETQDLSLVLQSSMKNIQSSSDCC STRFLMIP DLFSSSGMI
Sbjct: 275 CCLQPPSLKETFSYDLRAETQDLSLVLQSSMKNIQSSSDCCHSTRFLMIPRDLFSSSGMI 334

Query: 245 KLNICIWKNGSSSVRH 261
           KLNICIW+NGSS V H
Sbjct: 335 KLNICIWQNGSSPVHH 349

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BLAST of Cla019768 vs. NCBI nr
Match: gi|659121126|ref|XP_008460511.1| (PREDICTED: E3 ubiquitin-protein ligase SINA-like 7 [Cucumis melo])

HSP 1 Score: 201.4 bits (511), Expect = 1.9e-48
Identity = 100/128 (78.12%), Postives = 111/128 (86.72%), Query Frame = 1


Query: 1   MAKFSVGGEEDGDDGPSSPRGKRKRSSFRINATVDFPSHNQQREQ---QGFSSDKEESEN 60
           MAKFSV GEED  DGPSSPRGKRKRSSFRINATVDFP  ++QREQ   QGF+SDKEESEN
Sbjct: 1   MAKFSVDGEEDAGDGPSSPRGKRKRSSFRINATVDFPRRSEQREQGEEQGFNSDKEESEN 60

Query: 61  DEEETKRHRNHKIEEHVGGDDGSKRSLCSVKSCTKNVKPNASVTMFFIDPEVLDCSICCE 120
           DE+++KRHRN +IEEH+  +DG KR+L S KSCTKN KPN SV+MF IDPEVLDCSICCE
Sbjct: 61  DEDQSKRHRNDEIEEHLR-EDGGKRALWSGKSCTKNAKPNGSVSMFLIDPEVLDCSICCE 120

Query: 121 PLSIPIFQ 126
           PLSIPIFQ
Sbjct: 121 PLSIPIFQ 127

HSP 2 Score: 133.3 bits (334), Expect = 6.3e-28
Identity = 68/83 (81.93%), Postives = 74/83 (89.16%), Query Frame = 1


Query: 125 QLSLHFSSKHTNSATNFQFSSSFTIFLKTNDTYHVLQEQDDGILFILSNSFENLGSAVKI 184
           QLSLHFS+KHT+SATNF F SSFTI LKT+DTYHVLQEQ DG LFILSNSF+NLG+ VKI
Sbjct: 79  QLSLHFSNKHTDSATNFHFRSSFTICLKTDDTYHVLQEQ-DGFLFILSNSFKNLGNVVKI 138

Query: 185 CCLRPPSLKEAFSYDLRAETQDL 208
           CCL+PP L E FSYDLRAETQDL
Sbjct: 139 CCLQPP-LNETFSYDLRAETQDL 159

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BLAST of Cla019768 vs. NCBI nr
Match: gi|700195864|gb|KGN51041.1| (hypothetical protein Csa_5G418270 [Cucumis sativus])

HSP 1 Score: 133.3 bits (334), Expect = 6.3e-28
Identity = 68/83 (81.93%), Postives = 74/83 (89.16%), Query Frame = 1


Query: 125 QLSLHFSSKHTNSATNFQFSSSFTIFLKTNDTYHVLQEQDDGILFILSNSFENLGSAVKI 184
           QLSLHFS+KHT+SATNF F SSFTI LKT+DTYHVLQEQ DG LFILSNSF+NLG+ VKI
Sbjct: 85  QLSLHFSNKHTDSATNFHFRSSFTICLKTDDTYHVLQEQ-DGFLFILSNSFKNLGNVVKI 144

Query: 185 CCLRPPSLKEAFSYDLRAETQDL 208
           CCL+PP L E FSYDLRAETQDL
Sbjct: 145 CCLQPP-LNETFSYDLRAETQDL 165

[Close]

BLAST of Cla019768 vs. NCBI nr
Match: gi|470135025|ref|XP_004303331.1| (PREDICTED: E3 ubiquitin-protein ligase SINA-like 10 isoform X3 [Fragaria vesca subsp. vesca])

HSP 1 Score: 110.2 bits (274), Expect = 5.7e-21
Identity = 60/131 (45.80%), Postives = 83/131 (63.36%), Query Frame = 1


Query: 125 QLSLHFSSKHTNSATNFQFSSSFTIFLKTNDTYHVLQEQDDGILFILSNSFENLGSAVKI 184
           QL  HFSS H NSAT F ++ SF+I +  ND + VLQE++DG+LFIL N  E +G+ V++
Sbjct: 222 QLYQHFSSNHLNSATRFLYNCSFSITINFNDKFVVLQEENDGMLFILDNESEIIGNMVRL 281

Query: 185 CCLRPPSLKEAFSYDLRAETQDLSLVLQSSMKNIQSSSDCCRSTRFLMIPCDLFSSSGMI 244
             ++ P     F YDL A+ +   L LQS   + QS      S+  L+IP D FSS G +
Sbjct: 282 SSIQ-PRFMGGFFYDLTAKRKGCLLRLQSFTTSTQSHVRSPTSSGSLIIPGDFFSSCGQL 341

Query: 245 KLNICIWKNGS 256
           KL+ICIW+NG+
Sbjct: 342 KLDICIWRNGA 351

[Close]

BLAST of Cla019768 vs. NCBI nr
Match: gi|470135025|ref|XP_004303331.1| (PREDICTED: E3 ubiquitin-protein ligase SINA-like 10 isoform X3 [Fragaria vesca subsp. vesca])

HSP 1 Score: 82.0 bits (201), Expect = 1.7e-12
Identity = 47/135 (34.81%), Postives = 74/135 (54.81%), Query Frame = 1


Query: 1   MAKFSVGGEEDGDDGPSSPRGKRKRSSFRINATVDFPSHN-----QQREQQGFSSDKEES 60
           M +FS+GG+EDG  GPSSPR KR+R   R  AT+           Q  E +  SS+ E+ 
Sbjct: 1   MTRFSLGGDEDGG-GPSSPRLKRRRLILRTAATIATGDRRRGGGLQAVEDESASSESEDE 60

Query: 61  END-----EEETKRHRNHKIEEHVGGDDGSKRSLCSVKSCTKNVKPNASVTMFFIDPEVL 120
           E++     EEE++  + H+ +     + GS  +   +   +     + S+++   DP+VL
Sbjct: 61  EDESESEEEEESEGDQEHQRQLRTNFELGSASAAQQIALASTTTATDRSISITLADPDVL 120

Query: 121 DCSICCEPLSIPIFQ 126
           DC ICCE L++P+FQ
Sbjct: 121 DCPICCESLTVPVFQ 134

HSP 2 Score: 109.8 bits (273), Expect = 7.4e-21
Identity = 60/130 (46.15%), Postives = 82/130 (63.08%), Query Frame = 1


Query: 125 QLSLHFSSKHTNSATNFQFSSSFTIFLKTNDTYHVLQEQDDGILFILSNSFENLGSAVKI 184
           QL  HFSS H NSAT F ++ SF+I +  ND + VLQE++DG+LFIL N  E +G+ V++
Sbjct: 222 QLYQHFSSNHLNSATRFLYNCSFSITINFNDKFVVLQEENDGMLFILDNESEIIGNMVRL 281

Query: 185 CCLRPPSLKEAFSYDLRAETQDLSLVLQSSMKNIQSSSDCCRSTRFLMIPCDLFSSSGMI 244
             ++ P     F YDL A+ +   L LQS   + QS      S+  L+IP D FSS G +
Sbjct: 282 SSIQ-PRFMGGFFYDLTAKRKGCLLRLQSFTTSTQSHVRSPTSSGSLIIPGDFFSSCGQL 341

Query: 245 KLNICIWKNG 255
           KL+ICIW+NG
Sbjct: 342 KLDICIWRNG 350

The following BLAST results are available for this feature:

BLAST of Cla019768 vs. Swiss-Prot


Match Name	E-value	Identity	Description
SIL10_ARATH	5.9e-10	32.84	E3 ubiquitin-protein ligase SINA-like 10 OS=Arabidopsis thaliana GN=At5g37930 PE...	[more]

BLAST of Cla019768 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KTM5_CUCSA	4.4e-28	81.93	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G418270 PE=4 SV=1	[more]
G7KFT5_MEDTR	4.4e-20	48.00	E3 ubiquitin-protein ligase OS=Medicago truncatula GN=MTR_5g076810 PE=3 SV=2	[more]
G7KFP6_MEDTR	9.8e-20	42.65	E3 ubiquitin-protein ligase OS=Medicago truncatula GN=MTR_5g076370 PE=3 SV=1	[more]
A0A072VIC6_MEDTR	9.8e-20	39.43	E3 ubiquitin-protein ligase OS=Medicago truncatula GN=MTR_1g046650 PE=3 SV=1	[more]
A0A072VHW0_MEDTR	9.8e-20	39.43	E3 ubiquitin-protein ligase OS=Medicago truncatula GN=MTR_1g046650 PE=3 SV=1	[more]

BLAST of Cla019768 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659121126\|ref\|XP_008460511.1\|	9.6e-61	89.71	PREDICTED: E3 ubiquitin-protein ligase SINA-like 7 [Cucumis melo]	[more]
gi\|659121126\|ref\|XP_008460511.1\|	1.9e-48	78.13	PREDICTED: E3 ubiquitin-protein ligase SINA-like 7 [Cucumis melo]	[more]
gi\|700195864\|gb\|KGN51041.1\|	6.3e-28	81.93	hypothetical protein Csa_5G418270 [Cucumis sativus]	[more]
gi\|470135025\|ref\|XP_004303331.1\|	5.7e-21	45.80	PREDICTED: E3 ubiquitin-protein ligase SINA-like 10 isoform X3 [Fragaria vesca s...	[more]
gi\|470135025\|ref\|XP_004303331.1\|	1.7e-12	34.81	PREDICTED: E3 ubiquitin-protein ligase SINA-like 10 isoform X3 [Fragaria vesca s...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR004162	SINA-like
IPR008974	TRAF-like

Vocabulary: **Cellular Component**
Term	Definition
GO:0005634	nucleus

Vocabulary: **Biological Process**
Term	Definition
GO:0006511	ubiquitin-dependent protein catabolic process
GO:0007275	multicellular organism development

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0007275	multicellular organism development
biological_process	GO:0016567	protein ubiquitination
biological_process	GO:0006511	ubiquitin-dependent protein catabolic process
cellular_component	GO:0005634	nucleus
molecular_function	GO:0005515	protein binding
molecular_function	GO:0004842	ubiquitin-protein transferase activity
molecular_function	GO:0008270	zinc ion binding
molecular_function	GO:0016874	ligase activity
molecular_function	GO:0016740	transferase activity

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
WMU13717	watermelon EST collection version 2.0	transcribed_cluster
WMU48713	watermelon EST collection version 2.0	transcribed_cluster
WMU58424	watermelon EST collection version 2.0	transcribed_cluster
WMU77581	watermelon EST collection version 2.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla019768	Cla019768.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
WMU13717	WMU13717	transcribed_cluster
WMU58424	WMU58424	transcribed_cluster
WMU77581	WMU77581	transcribed_cluster
WMU48713	WMU48713	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004162	E3 ubiquitin-protein ligase SIN-like	PANTHER	PTHR10315	SEVEN IN ABSENTIA HOMOLOG	coord: 125..257 score: 1.9
IPR008974	TRAF-like	unknown	SSF49599	TRAF domain-like	coord: 125..250 score: 3.9
None	No IPR available	PANTHER	PTHR10315:SF43	E3 UBIQUITIN-PROTEIN LIGASE	coord: 125..257 score: 1.9

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla019768	Cla97C03G059960	Watermelon (97103) v2	wmwmbB124
Cla019768	Csa5G418270	Cucumber (Chinese Long) v2	cuwmB384
Cla019768	MELO3C022842	Melon (DHL92) v3.5.1	mewmB013
Cla019768	ClCG03G008740	Watermelon (Charleston Gray)	wcgwmB223
Cla019768	Cucsa.034820	Cucumber (Gy14) v1	cgywmB010
Cla019768	CmaCh04G023000	Cucurbita maxima (Rimu)	cmawmB672
Cla019768	CmoCh04G024040	Cucurbita moschata (Rifu)	cmowmB667
Cla019768	Lsi09G009360	Bottle gourd (USVL1VR-Ls)	lsiwmB009
Cla019768	Cp4.1LG01g19900	Cucurbita pepo (Zucchini)	cpewmB399
Cla019768	MELO3C022842.2	Melon (DHL92) v3.6.1	medwmB011
Cla019768	Carg18263	Silver-seed gourd	carwmB0523
Cla019768	CsaV3_5G023990	Cucumber (Chinese Long) v3	cucwmB407
Cla019768	Bhi12G001076	Wax gourd	wgowmB058

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla019768	Cucumber (Gy14) v2	cgybwmB357
Cla019768	Silver-seed gourd	carwmB0828
Cla019768	Cucurbita maxima (Rimu)	cmawmB264
Cla019768	Cucurbita moschata (Rifu)	cmowmB254
Cla019768	Cucurbita pepo (Zucchini)	cpewmB175