Cla019768.1 (mRNA) Watermelon (97103) v1
The following sequences are available for this feature:
Legend: CDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGGCGAAATTTTCGGTTGGTGGAGAAGAGGATGGGGACGACGGTCCCAGTAGCCCTAGAGGCAAGAGGAAGAGATCCTCTTTTCGAATCAACGCCACTGTTGATTTTCCCTCCCATAACCAACAACGCGAACAACAGGGTTTCAGTTCCGACAAGGAAGAAAGTGAGAACGATGAAGAGGAGACCAAGCGCCATCGAAATCACAAAATTGAGGAACATGTTGGAGGGGACGACGGTAGTAAAAGATCACTCTGCTCGGTTAAGTCGTGTACTAAAAATGTGAAGCCAAATGCCTCCGTTACGATGTTCTTCATTGACCCAGAAGTGTTGGATTGCTCAATTTGCTGCGAACCTTTGAGTATCCCCATCTTCCAGGTCTCTTCCTTTCAACATCTCCATACTTGTTCTGTTTGCAATTAGTTGTATTTTTTTTATTTATTTATTTTTTTTTAATTTTTTTTTTTAATAGTTTACCGTGTTCTGATTCCTAATTGGGGGTTTGATTCGTTGGTTCTGTATTGTATTGGGCTTGGTTCAATTTAGCCTTTAATCCGATAAGATGAAATGGAAGCCATAAGTTTGACATGTAAAAAGGAAAGAAGTCCTGCGCTGATCGTGCTTTGTGTATAATTGGGAAAGCTGGTTCGAGAAGAAACATTGAAATCCTTAATAACCTCCCATCAACTTGAGGCGACAATCAAGCTAAATGTGCTTTGTGTGAGCAAAAAAAATGGATTATTAGCTTAAGAAATAGCAGAATTTTATCAAACCAGATAGCTGGATTATCTTTTGAGTAGAAAATGATCATACAAATGTTGAGGAACCACATATACCTCCACAAGTTATAGCTGAGGAAAAATATTTAACCTCAGTGGATGAATGCGAGATTGTTTGTTGTTACTTAGACCGTTAGATCGGACTAGAACTAATAAAACAAGGCTGGGGTCAAATACATATCAAGTGTGTTCAAAAGCTGCCAATAACTGGATGGATCATTGAACGGAGAAGACTAAGCATCTAAATCAAGCTTAACTGAACTGACTGGAGCACCAGTCATTCAGATTTTAGACCTAAAGATTAAGACCAATTTTCCCCCAACCAGATTCATTTGTTTTTGTTTTTGAACTAAGCTCCGGTGCTCCACTTACCTCTTGAAAAATTGAAAACTCATCTCTGGAATTATGGAGACAGTAGTGTACATACATCGATCAGTGGTCTCCTGTTCAAAAAATTTATTCATACTGATCCTCAATTTGAATCTTGTTTGCATGGTGGCATTATGAATAGAATTAATAGCAGCAGAAAGTAAGGTATCCTTAAAATTATAGGAAGAATGCTTGTGATCAGTGAGTTTGCATGGCTGACCAGATGCAGATGATGAGGCAGTTGTTTGGGAATCTAGAAATAAAGCAGTCGATGATTATAAGTTTGGGAAGATAAGGATAAGAAGTTTCAATGGAAAAATGAAGATGAAGAAAAGAATTGCTAGGATGAAGGTTGAGTTGCAAAAATTGAATGGCACGTACTATTGTGATGACAAGACCCATTTACATGATGATTGGTTGAGAGGTGATCCATGAAGATAGTATGTGTTAGGCCACCTATATTGCTTACTTATAGTAGAAAGGGTAACAAAGGAAAAGGGCTGGTGTATGGGAGTGTGGCTGCTGAGAGAAAGGGGTCATTGGGTTAGTTATTTTATTTATGTTGTATGTACGGGGAAGGTTATAAGGGAATGATAGGGAAGTTATTAGGAGTTAGTTTTTGGTGGTTGTTTCCATTGTGGAAAGGGTTGTGGAGGGGACAACTTTGGTTCCCTAGTGTTCTTGTAGCCTTAGGGCATCTTTTCATCTTTGAATCAATAAAGACTTGTAGTAGTTTCTTATCAGTATGCTAAATCCTTTTGATGCACAGATGAAGCATTGATTAGAGGAGTTAAAAATGAGGGGCTTGTAGATATTTGGAAGATTGATGGATGGGTGGATAGTAGGGGGTTGCTCACTTAAGTTTGATAATTAGTGTCTTAAAAAACACGGAAAAATTGAGATTGAACATCCAAATCAATGGAGATTAGTGGTGCAAGTTGTGCTTGGCCATTCCTCAAGACTTTTGGCTAACATAAAATTTTCCATAGAAGGTATTCTAATGAGGTTGCTTATGTTCATAAAGATTTTGAAGCGTCGCTTGATTGTGAAAGAAATTTGAAGATGATTCCATTTCCAGCTACTCTACTGCGCAGTTCAAGAGTCCTTTCTTTGGCTTTAAACCATGCACAATATGATCGTCCCTCATGCATGGGTAGATGTAAGAATTCAGAATGGAGGCCATGAATAAGTGTATGTATAAGGATCTCCTCAGCTTCAATATGAACTTAGACCAGCTAATTTATCTGAGTTTCTTTAATATGCTAAATAAATGGATCAGATATCTGATTTTGCCTCCTTTTAATGGAATAGAAATCATACTGCAATTCTAGAACAATTGATCTCGGTAAAGATGAGTACATCTTTTCTACTGACTGCCAGAGTTCTCGATAAGTTTTGAGTCTAGAAATGGGAACCTGAGCTCCTCCTCCCCCGTTAGCATGGTTTTGTTTTCTGGTGGGGGGTGTTCAGCTTATCAATGGAGAGGGGAACATCATACAGAGTATATGGGTGAAAGTTAAAGGATTTGATATATGTCTGTTTTCTCTGATCAGCCTTAGGATGATATTTTTGCATATTAAGTTATTAAGTGTCCGTTTGATAACGTTTCCATTTCCTGTTTCTGTTTCTCACTTTTTAAGTAATGGACTTGTTTGATAACTGTTCCCGTCTTTTGTTTCTAAATTTTAAGAAACATTTGTAAGAAAATGGGCAAAAATTGAGAAATAACAAAAAGTAGTTTCTTCTGTTTCTATTTTTATTTTACTGTTCTCTCAAGTAATCATTCTCAACTTTTGGTCTATTGGTATTAGACGGTCATGGTAATTAGTTTCCTTTTGCCAGTCAGGAGTTTGAATCCCACCTGAAGCAATTTTTTTTAACCTTTTCGATTTTTATTTTTATTTTTTGAAGAATTTGTTTTTTTTCATTAAATTCCTTTTTTTTGGTTTTTTTATTCATTTTGTTATTTACATAAATAATTCTCCCATATTTATATGTGATGTTTTCCAAAATAGAAAAACTACTAAAAATAATTACAAATATAGCAAAATTTAACTTTGTATCTATGATAGACTTAGATAGACCTAGATAGACATTTATCACTTTACCAGATAGACATCGATAGGTCTATCACGGTCTATCAGAGATAGAAAGTAAAATTTTGCTATATTTGTAAATAATTTGATATTTTTTCTATTTATAATAATTTTCTTATTTATATTTTATTTTAATTTTGAATTTTAAAATTCTCCAATATTTAGATTTATATATTATTTTAATTTTCAATATGTATATTAATTCTTTTAAAATTTGAACTTTTGAGCATTAAATTTTGTAATATGCGTGTTTATATATTATTTTAATTCTAATATTTTTAGAGTATAGATGAAACTGAGTAGAATTTTCAATATATAAATTTTGTTGACTAAGACATTCATTAGCTTAACTTTAATATTTTACAATCACGACATTTATATAATTATATAATTAAGTTGGATTTGACTTGACATCATTTAAGATAAATGAGTTGAGTTAGAAATGATAGTGCCGATCAAATTTAGACAACATATGAAGGATATGATACAACTTTGTTATTATATTTAGTTATCATCTAGACTTACTTCTATTAAATGATATAAACTTTTGATAATATCATTTTCGATGTTTAATGTATGACATATATATATATATATATATTTTTATATACATATATTATATTGTTACCAAAAAGAAAGAAAAAAAGAAAGAAAAAAACAAGAAATAGTTATCAAACAACTTTTTGTTTTTGATTTTTTTCAAGAAACAGGAAACAGGAACAGTTATCAAATGTAGTTCTGTTTCTTGTTCTCTAGAAAGAAACGGGAAACAAGAACGTTATCAAATGGGACCTAACTGATTGCCTTTTCCAAGTGCATTGGAAATTTAGACCACAGATTCCATAATTTTCTTGCTTCACTTCATCTATAGTATTAATGAGTACTGTTTGTTTTCTTCTTGGAGAAAAATTTCTGTTCAAGCTGTAAACAGTCTTGCAAAAAATATTTTTAATGCTGCATGATTTTTCAACCGAAAGAATCCAATTGAAAATTTGTAGTTTTGCTCTTCACTCTCTATTATTTGTATCTTTCTTCATATCTGAATTTGATTTGGTTGAGGTGTAATTTCATGTGTTCCTCTAAAGTTGTGTCCGGATGAGGCAATGGTTCCACAGGAGCTTTTAACATCGGCTTTGTGGAAGAACGTGGGGATAGCAATATAAATTTTAGTACAAAAGGATATTCTTAAAAGTCAGTATGACGCTAGTGTATGGGAAGAAAACATGACATATCAATGACCGGTTAGGTTACTACAAAAATATAAAGGCCATAGAGTAAAGGTTATTTGGCCTGACATCCAATTCCGCTCGCCTGATGTGAAAAGTAAAGGTGATATTTTATAGAATTTGATAGAGACTAGAAAAATGATAATTTGTAGAATTAGAAAATGTGGAAAGATCTGGTAACTAGAGGAACTTACGATCTCCCCCTTGAGTAAGCCTAAATTACTAAACCATCATTTACCTTCATCGGTTCATCCTCATTAACAGACTCCTTGGCCAAGGATTAACATCCCTTAGCGCTATAATAATATTCTAACTGAATTGTTACTGCACAATGCACATCTTAAGTGTGAGAATGAAGTTATAACTTTTAAGCAGATGAAAATTTTTCTGAGAACAGAAAATCACATGGACATTGGCGCATGCCTTCAACTCTTATACCAGTCCATAAAACAGTCTAAAGGATCAGAACATGAGCACTGTGGACATTATTGTTTGTCCCTAATGTATGACTTGTGCACTGAAAGAAAAAATGAAAAATCGCATAAGAAGATTTTGATTGTTTAGTTTACATCTACTTAGTTTCCTTGAGGTCTTGAGTTTTGAGGTGAACTGGTAGCTTCCTCTTTAACCTCTGCCAATTCTTTCAGCTAAAGTGGTCATACATTCGGTGTAAGTTAGAATTGGTATTTAATAATTGCTCATTTTGTTCTCTCATATCACATATATCAATAGTATGTCGACTTAACTAGTCTTTTTTCATTTATTGCATGAAATTCAGTGTGAGAATGGACATATTGCATGCTCTTCCTGCTGCAACAAACTTAAGAATAAATGTGCAACCTGCTCTTGGCCTATTGGCTATAATCGTTGTCGGGCCGTTGAGAAGGTTCTTGAATCCATTAAATTTCCCTGCAAACAATCAAAGTTTGGATGCAAGGAGATCGTTGGTTATGGTAATGAAAGTGACCACGAAAAAACTTGCCTATATGCCCCTTGTTTATGCCCCCATTCTGATTGCAACTTTATGGCCTCATCTAAGCAGTTATCATTACACTTTAGCAGTAAACATACAAACTCTGCTACCAACTTCCAGTTCAGTTCTAGCTTCACCATTTTCCTAAAAACTAACGATACTTACCACGTCCTTCAAGAACAAGATGATGGTATTCTTTTTATTCTCAGCAATAGTTTTGAAAATCTGGGAAGTGCTGTTAAAATTTGTTGCCTTCGACCTCCTTCTTTGAAGGAAGCATTTTCTTATGATCTACGTGCAGAAACTCAGGATCTCTCCCTTGTTTTACAATCTTCCATGAAGAACATTCAATCATCATCAGATTGCTGTCGCTCGACGAGGTTTCTTATGATTCCATGTGATTTATTCAGTTCTTCTGGGATGATCAAATTGAATATTTGCATATGGAAAAACGGTTCATCTTCGGTGCGCCATGGATGA ATGGCGAAATTTTCGGTTGGTGGAGAAGAGGATGGGGACGACGGTCCCAGTAGCCCTAGAGGCAAGAGGAAGAGATCCTCTTTTCGAATCAACGCCACTGTTGATTTTCCCTCCCATAACCAACAACGCGAACAACAGGGTTTCAGTTCCGACAAGGAAGAAAGTGAGAACGATGAAGAGGAGACCAAGCGCCATCGAAATCACAAAATTGAGGAACATGTTGGAGGGGACGACGGTAGTAAAAGATCACTCTGCTCGGTTAAGTCGTGTACTAAAAATGTGAAGCCAAATGCCTCCGTTACGATGTTCTTCATTGACCCAGAAGTGTTGGATTGCTCAATTTGCTGCGAACCTTTGAGTATCCCCATCTTCCAGTTATCATTACACTTTAGCAGTAAACATACAAACTCTGCTACCAACTTCCAGTTCAGTTCTAGCTTCACCATTTTCCTAAAAACTAACGATACTTACCACGTCCTTCAAGAACAAGATGATGGTATTCTTTTTATTCTCAGCAATAGTTTTGAAAATCTGGGAAGTGCTGTTAAAATTTGTTGCCTTCGACCTCCTTCTTTGAAGGAAGCATTTTCTTATGATCTACGTGCAGAAACTCAGGATCTCTCCCTTGTTTTACAATCTTCCATGAAGAACATTCAATCATCATCAGATTGCTGTCGCTCGACGAGGTTTCTTATGATTCCATGTGATTTATTCAGTTCTTCTGGGATGATCAAATTGAATATTTGCATATGGAAAAACGGTTCATCTTCGGTGCGCCATGGATGA ATGGCGAAATTTTCGGTTGGTGGAGAAGAGGATGGGGACGACGGTCCCAGTAGCCCTAGAGGCAAGAGGAAGAGATCCTCTTTTCGAATCAACGCCACTGTTGATTTTCCCTCCCATAACCAACAACGCGAACAACAGGGTTTCAGTTCCGACAAGGAAGAAAGTGAGAACGATGAAGAGGAGACCAAGCGCCATCGAAATCACAAAATTGAGGAACATGTTGGAGGGGACGACGGTAGTAAAAGATCACTCTGCTCGGTTAAGTCGTGTACTAAAAATGTGAAGCCAAATGCCTCCGTTACGATGTTCTTCATTGACCCAGAAGTGTTGGATTGCTCAATTTGCTGCGAACCTTTGAGTATCCCCATCTTCCAGTTATCATTACACTTTAGCAGTAAACATACAAACTCTGCTACCAACTTCCAGTTCAGTTCTAGCTTCACCATTTTCCTAAAAACTAACGATACTTACCACGTCCTTCAAGAACAAGATGATGGTATTCTTTTTATTCTCAGCAATAGTTTTGAAAATCTGGGAAGTGCTGTTAAAATTTGTTGCCTTCGACCTCCTTCTTTGAAGGAAGCATTTTCTTATGATCTACGTGCAGAAACTCAGGATCTCTCCCTTGTTTTACAATCTTCCATGAAGAACATTCAATCATCATCAGATTGCTGTCGCTCGACGAGGTTTCTTATGATTCCATGTGATTTATTCAGTTCTTCTGGGATGATCAAATTGAATATTTGCATATGGAAAAACGGTTCATCTTCGGTGCGCCATGGATGA MAKFSVGGEEDGDDGPSSPRGKRKRSSFRINATVDFPSHNQQREQQGFSSDKEESENDEEETKRHRNHKIEEHVGGDDGSKRSLCSVKSCTKNVKPNASVTMFFIDPEVLDCSICCEPLSIPIFQLSLHFSSKHTNSATNFQFSSSFTIFLKTNDTYHVLQEQDDGILFILSNSFENLGSAVKICCLRPPSLKEAFSYDLRAETQDLSLVLQSSMKNIQSSSDCCRSTRFLMIPCDLFSSSGMIKLNICIWKNGSSSVRHG
BLAST of Cla019768 vs. Swiss-Prot
Match: SIL10_ARATH (E3 ubiquitin-protein ligase SINA-like 10 OS=Arabidopsis thaliana GN=At5g37930 PE=2 SV=1) HSP 1 Score: 66.2 bits (160), Expect = 5.9e-10 Identity = 44/134 (32.84%), Postives = 60/134 (44.78%), Query Frame = 1
BLAST of Cla019768 vs. TrEMBL
Match: A0A0A0KTM5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G418270 PE=4 SV=1) HSP 1 Score: 133.3 bits (334), Expect = 4.4e-28 Identity = 68/83 (81.93%), Postives = 74/83 (89.16%), Query Frame = 1
BLAST of Cla019768 vs. TrEMBL
Match: G7KFT5_MEDTR (E3 ubiquitin-protein ligase OS=Medicago truncatula GN=MTR_5g076810 PE=3 SV=2) HSP 1 Score: 106.7 bits (265), Expect = 4.4e-20 Identity = 60/125 (48.00%), Postives = 80/125 (64.00%), Query Frame = 1
BLAST of Cla019768 vs. TrEMBL
Match: G7KFP6_MEDTR (E3 ubiquitin-protein ligase OS=Medicago truncatula GN=MTR_5g076370 PE=3 SV=1) HSP 1 Score: 105.5 bits (262), Expect = 9.8e-20 Identity = 58/136 (42.65%), Postives = 79/136 (58.09%), Query Frame = 1
BLAST of Cla019768 vs. TrEMBL
Match: A0A072VIC6_MEDTR (E3 ubiquitin-protein ligase OS=Medicago truncatula GN=MTR_1g046650 PE=3 SV=1) HSP 1 Score: 105.5 bits (262), Expect = 9.8e-20 Identity = 69/175 (39.43%), Postives = 95/175 (54.29%), Query Frame = 1
BLAST of Cla019768 vs. TrEMBL
Match: A0A072VHW0_MEDTR (E3 ubiquitin-protein ligase OS=Medicago truncatula GN=MTR_1g046650 PE=3 SV=1) HSP 1 Score: 105.5 bits (262), Expect = 9.8e-20 Identity = 69/175 (39.43%), Postives = 95/175 (54.29%), Query Frame = 1
BLAST of Cla019768 vs. NCBI nr
Match: gi|659121126|ref|XP_008460511.1| (PREDICTED: E3 ubiquitin-protein ligase SINA-like 7 [Cucumis melo]) HSP 1 Score: 242.3 bits (617), Expect = 9.6e-61 Identity = 122/136 (89.71%), Postives = 126/136 (92.65%), Query Frame = 1
BLAST of Cla019768 vs. NCBI nr
Match: gi|659121126|ref|XP_008460511.1| (PREDICTED: E3 ubiquitin-protein ligase SINA-like 7 [Cucumis melo]) HSP 1 Score: 201.4 bits (511), Expect = 1.9e-48 Identity = 100/128 (78.12%), Postives = 111/128 (86.72%), Query Frame = 1
HSP 2 Score: 133.3 bits (334), Expect = 6.3e-28 Identity = 68/83 (81.93%), Postives = 74/83 (89.16%), Query Frame = 1
BLAST of Cla019768 vs. NCBI nr
Match: gi|700195864|gb|KGN51041.1| (hypothetical protein Csa_5G418270 [Cucumis sativus]) HSP 1 Score: 133.3 bits (334), Expect = 6.3e-28 Identity = 68/83 (81.93%), Postives = 74/83 (89.16%), Query Frame = 1
BLAST of Cla019768 vs. NCBI nr
Match: gi|470135025|ref|XP_004303331.1| (PREDICTED: E3 ubiquitin-protein ligase SINA-like 10 isoform X3 [Fragaria vesca subsp. vesca]) HSP 1 Score: 110.2 bits (274), Expect = 5.7e-21 Identity = 60/131 (45.80%), Postives = 83/131 (63.36%), Query Frame = 1
BLAST of Cla019768 vs. NCBI nr
Match: gi|470135025|ref|XP_004303331.1| (PREDICTED: E3 ubiquitin-protein ligase SINA-like 10 isoform X3 [Fragaria vesca subsp. vesca]) HSP 1 Score: 82.0 bits (201), Expect = 1.7e-12 Identity = 47/135 (34.81%), Postives = 74/135 (54.81%), Query Frame = 1
HSP 2 Score: 109.8 bits (273), Expect = 7.4e-21 Identity = 60/130 (46.15%), Postives = 82/130 (63.08%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28
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