Csa5G418270 (gene) Cucumber (Chinese Long) v2

NameCsa5G418270
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUbiquitin; contains IPR008974 (TRAF-like)
LocationChr5 : 15062596 .. 15063114 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAATTTAGTGTGAGAATGGACATATTGCATGCTCTTCCTGCTGCAACAAACTTAAGAATGAATGTGCAACCTGCCCGTGGCCTATTGGCTATAATCGTTGTCGAGCAGTTGAGAAGGTTCTTGAATCCATTAAATTTCCCTGCAAACAATCAAAGTTTGGATGGCAACGGAAGTGACCACAAAAAGACATGCCTATATGCCCCTTGTTTATGCCCCTATTTTGATTGCAAATTTATGGCTTCATCTAAGCAGTTATCATTACACTTTAGCAATAAACATACAGACTCCGCTACCAACTTCCATTTCAGATCTAGCTTCACCATATGCTTAAAAACTGACGATACTTACCACGTCCTTCAAGAACAAGATGGTTTTCTTTTTATTCTCAGCAATAGTTTCAAAAATCTGGGAAATGTTGTTAAAATTTGTTGTCTTCAACCTCCTTTGAATGAAACATTTTCTTATGATCTACGTGCGGAAACTCAGGACCTTCCCTGGTTTTACAATCTTCCATGA

mRNA sequence

ATGAAATTTAGTGTGAGAATGGACATATTGCATGCTCTTCCTGCTGCAACAAACTTAAGAATGAATGTGCAACCTGCCCGTGGCCTATTGGCTATAATCGTTGTCGAGCAGTTGAGAAGGTTCTTGAATCCATTAAATTTCCCTGCAAACAATCAAAGTTTGGATGGCAACGGAAGTGACCACAAAAAGACATGCCTATATGCCCCTTGTTTATGCCCCTATTTTGATTGCAAATTTATGGCTTCATCTAAGCAGTTATCATTACACTTTAGCAATAAACATACAGACTCCGCTACCAACTTCCATTTCAGATCTAGCTTCACCATATGCTTAAAAACTGACGATACTTACCACGTCCTTCAAGAACAAGATGGTTTTCTTTTTATTCTCAGCAATAGTTTCAAAAATCTGGGAAATGTTGTTAAAATTTGTTGTCTTCAACCTCCTTTGAATGAAACATTTTCTTATGATCTACGTGCGGAAACTCAGGACCTTCCCTGGTTTTACAATCTTCCATGA

Coding sequence (CDS)

ATGAAATTTAGTGTGAGAATGGACATATTGCATGCTCTTCCTGCTGCAACAAACTTAAGAATGAATGTGCAACCTGCCCGTGGCCTATTGGCTATAATCGTTGTCGAGCAGTTGAGAAGGTTCTTGAATCCATTAAATTTCCCTGCAAACAATCAAAGTTTGGATGGCAACGGAAGTGACCACAAAAAGACATGCCTATATGCCCCTTGTTTATGCCCCTATTTTGATTGCAAATTTATGGCTTCATCTAAGCAGTTATCATTACACTTTAGCAATAAACATACAGACTCCGCTACCAACTTCCATTTCAGATCTAGCTTCACCATATGCTTAAAAACTGACGATACTTACCACGTCCTTCAAGAACAAGATGGTTTTCTTTTTATTCTCAGCAATAGTTTCAAAAATCTGGGAAATGTTGTTAAAATTTGTTGTCTTCAACCTCCTTTGAATGAAACATTTTCTTATGATCTACGTGCGGAAACTCAGGACCTTCCCTGGTTTTACAATCTTCCATGA

Protein sequence

MKFSVRMDILHALPAATNLRMNVQPARGLLAIIVVEQLRRFLNPLNFPANNQSLDGNGSDHKKTCLYAPCLCPYFDCKFMASSKQLSLHFSNKHTDSATNFHFRSSFTICLKTDDTYHVLQEQDGFLFILSNSFKNLGNVVKICCLQPPLNETFSYDLRAETQDLPWFYNLP*
BLAST of Csa5G418270 vs. TrEMBL
Match: A0A0A0KTM5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G418270 PE=4 SV=1)

HSP 1 Score: 361.3 bits (926), Expect = 6.6e-97
Identity = 172/172 (100.00%), Postives = 172/172 (100.00%), Query Frame = 1

Query: 1   MKFSVRMDILHALPAATNLRMNVQPARGLLAIIVVEQLRRFLNPLNFPANNQSLDGNGSD 60
           MKFSVRMDILHALPAATNLRMNVQPARGLLAIIVVEQLRRFLNPLNFPANNQSLDGNGSD
Sbjct: 1   MKFSVRMDILHALPAATNLRMNVQPARGLLAIIVVEQLRRFLNPLNFPANNQSLDGNGSD 60

Query: 61  HKKTCLYAPCLCPYFDCKFMASSKQLSLHFSNKHTDSATNFHFRSSFTICLKTDDTYHVL 120
           HKKTCLYAPCLCPYFDCKFMASSKQLSLHFSNKHTDSATNFHFRSSFTICLKTDDTYHVL
Sbjct: 61  HKKTCLYAPCLCPYFDCKFMASSKQLSLHFSNKHTDSATNFHFRSSFTICLKTDDTYHVL 120

Query: 121 QEQDGFLFILSNSFKNLGNVVKICCLQPPLNETFSYDLRAETQDLPWFYNLP 173
           QEQDGFLFILSNSFKNLGNVVKICCLQPPLNETFSYDLRAETQDLPWFYNLP
Sbjct: 121 QEQDGFLFILSNSFKNLGNVVKICCLQPPLNETFSYDLRAETQDLPWFYNLP 172

BLAST of Csa5G418270 vs. TrEMBL
Match: B9T326_RICCO (E3 ubiquitin-protein ligase OS=Ricinus communis GN=RCOM_0327010 PE=3 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 1.9e-19
Identity = 56/131 (42.75%), Postives = 80/131 (61.07%), Query Frame = 1

Query: 32  IIVVEQLRRFLNPLNFPANNQSLDGNGSDHKKTCLYAPCLCPYFDCKFMASSKQLSLHFS 91
           I+VV +  R L   N    N+ LD N  DH++TC ++PC CP   C F+ SS+QLSLHFS
Sbjct: 30  IVVVSEPVRTLCRNNEYGCNRILDNN-DDHEETCSFSPCACPLLHCNFIGSSEQLSLHFS 89

Query: 92  NKHTDSATNFHFRSSFTICLKTDDTYHVLQ-EQDGFLFILSNSFKNLGNVVKICCLQPPL 151
            KH D+   F + S  ++ L  ++ + VLQ E+DG LF+LS S +++GN   I C+ P  
Sbjct: 90  GKHWDTGRRFRYNSPLSVSLGMNEQFLVLQAEEDGILFLLSKSTESIGNTTTITCIGPSS 149

Query: 152 N-ETFSYDLRA 161
           + E F YD+ A
Sbjct: 150 SKEKFLYDIIA 159

BLAST of Csa5G418270 vs. TrEMBL
Match: M5XIS0_PRUPE (E3 ubiquitin-protein ligase OS=Prunus persica GN=PRUPE_ppa006254mg PE=3 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 2.5e-19
Identity = 50/105 (47.62%), Postives = 68/105 (64.76%), Query Frame = 1

Query: 59  SDHKKTCLYAPCLCPYFDCKFMASSKQLSLHFSNKHTDSATNFHFRSSFTICLKTDDTYH 118
           ++H+K C+Y+PC CP   C F++SSKQL LHF+  H D AT F +   F+I L   D + 
Sbjct: 255 NEHEKACMYSPCSCPLSGCNFISSSKQLYLHFTVSHVDYATRFLYGIDFSITLNIKDKFL 314

Query: 119 VLQE-QDGFLFILSNSFKNLGNVVKICCLQPPLNETFSYDLRAET 163
           VLQE ++G LFIL N  + LGN+V + C+QP     F YDL A+T
Sbjct: 315 VLQEKREGILFILDNHAEKLGNLVSLRCIQPIFKGGFYYDLLAKT 359

BLAST of Csa5G418270 vs. TrEMBL
Match: A5BK03_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_032233 PE=4 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 4.2e-19
Identity = 52/128 (40.62%), Postives = 76/128 (59.38%), Query Frame = 1

Query: 33  IVVEQLRRFLNPLNFPANNQSLDGNGSDHKKTCLYAPCLCPYFDCKFMASSKQLSLHFSN 92
           +VVE +R+      +           S+H++TC YAPC CP  +C F+ SS+QLSLHFS+
Sbjct: 513 VVVESVRKACQNKEYGCKETLDYMKKSEHEETCSYAPCTCPLLECDFVGSSEQLSLHFSS 572

Query: 93  KHTDSATNFHFRSSFTICLKTDDTYHVLQ-EQDGFLFILSNSFKNLGNVVKICCLQPPLN 152
           KH DS   F +     I L  ++ + VLQ E+DG LF+L+   + +GN + I C++P  +
Sbjct: 573 KHWDSGRRFRYNCPQAISLGMNEPFLVLQAEEDGILFLLNKGIEAIGNTIMITCIKPSSS 632

Query: 153 -ETFSYDL 159
            ETF YDL
Sbjct: 633 KETFLYDL 640

BLAST of Csa5G418270 vs. TrEMBL
Match: A0A151RZG6_CAJCA (E3 ubiquitin-protein ligase OS=Cajanus cajan GN=KK1_030427 PE=3 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 4.2e-19
Identity = 48/103 (46.60%), Postives = 67/103 (65.05%), Query Frame = 1

Query: 59  SDHKKTCLYAPCLCPYFDCKFMASSKQLSLHFSNKHTDSATNFHFRSSFTICLKTDDTYH 118
           +DH+K C+Y PCLCP   C F+ASSK+L LHFS++H    T F +   FT+ L TD    
Sbjct: 167 NDHEKECIYLPCLCPLAGCDFVASSKELFLHFSHRHVGFGTQFQYDKFFTVILSTDQKTT 226

Query: 119 VLQEQ-DGFLFILSNSFKNLGNVVKICCLQPPLNETFSYDLRA 161
           VLQE+ D  LF++ N+ ++LGNVV+I C+ P     F Y++ A
Sbjct: 227 VLQEKNDANLFVVHNNHEHLGNVVRISCIGPKSMAEFQYEVLA 269

BLAST of Csa5G418270 vs. TAIR10
Match: AT5G37870.1 (AT5G37870.1 Protein with RING/U-box and TRAF-like domains)

HSP 1 Score: 49.3 bits (116), Expect = 2.8e-06
Identity = 31/108 (28.70%), Postives = 45/108 (41.67%), Query Frame = 1

Query: 56  GNGSDHKKTCLYAPCLCPYFDCKFMASSKQLSLHFSNKHTDSATNFHFRSSFTICLKTDD 115
           G  S H+K C ++PC CP   C +  S K L  H+   H+  +T + F     I      
Sbjct: 117 GRESTHEKICNFSPCSCPVQGCNYTGSYKDLYEHYDLTHSTGSTAYSFNGVSYIAAMMFI 176

Query: 116 TYHVLQE---QDGFLFILSNSFKNLGNVVKICCLQPPLNET--FSYDL 159
           +  +L E   +   LF++    +  G  V + C+ P   E   FSY L
Sbjct: 177 SDKILIERVYEKKLLFVVQCFEEPCGVYVSVSCIAPSAPEVGEFSYGL 224

BLAST of Csa5G418270 vs. NCBI nr
Match: gi|700195864|gb|KGN51041.1| (hypothetical protein Csa_5G418270 [Cucumis sativus])

HSP 1 Score: 361.3 bits (926), Expect = 9.4e-97
Identity = 172/172 (100.00%), Postives = 172/172 (100.00%), Query Frame = 1

Query: 1   MKFSVRMDILHALPAATNLRMNVQPARGLLAIIVVEQLRRFLNPLNFPANNQSLDGNGSD 60
           MKFSVRMDILHALPAATNLRMNVQPARGLLAIIVVEQLRRFLNPLNFPANNQSLDGNGSD
Sbjct: 1   MKFSVRMDILHALPAATNLRMNVQPARGLLAIIVVEQLRRFLNPLNFPANNQSLDGNGSD 60

Query: 61  HKKTCLYAPCLCPYFDCKFMASSKQLSLHFSNKHTDSATNFHFRSSFTICLKTDDTYHVL 120
           HKKTCLYAPCLCPYFDCKFMASSKQLSLHFSNKHTDSATNFHFRSSFTICLKTDDTYHVL
Sbjct: 61  HKKTCLYAPCLCPYFDCKFMASSKQLSLHFSNKHTDSATNFHFRSSFTICLKTDDTYHVL 120

Query: 121 QEQDGFLFILSNSFKNLGNVVKICCLQPPLNETFSYDLRAETQDLPWFYNLP 173
           QEQDGFLFILSNSFKNLGNVVKICCLQPPLNETFSYDLRAETQDLPWFYNLP
Sbjct: 121 QEQDGFLFILSNSFKNLGNVVKICCLQPPLNETFSYDLRAETQDLPWFYNLP 172

BLAST of Csa5G418270 vs. NCBI nr
Match: gi|449445208|ref|XP_004140365.1| (PREDICTED: E3 ubiquitin-protein ligase SINA-like 10 [Cucumis sativus])

HSP 1 Score: 350.1 bits (897), Expect = 2.2e-93
Identity = 166/166 (100.00%), Postives = 166/166 (100.00%), Query Frame = 1

Query: 7   MDILHALPAATNLRMNVQPARGLLAIIVVEQLRRFLNPLNFPANNQSLDGNGSDHKKTCL 66
           MDILHALPAATNLRMNVQPARGLLAIIVVEQLRRFLNPLNFPANNQSLDGNGSDHKKTCL
Sbjct: 1   MDILHALPAATNLRMNVQPARGLLAIIVVEQLRRFLNPLNFPANNQSLDGNGSDHKKTCL 60

Query: 67  YAPCLCPYFDCKFMASSKQLSLHFSNKHTDSATNFHFRSSFTICLKTDDTYHVLQEQDGF 126
           YAPCLCPYFDCKFMASSKQLSLHFSNKHTDSATNFHFRSSFTICLKTDDTYHVLQEQDGF
Sbjct: 61  YAPCLCPYFDCKFMASSKQLSLHFSNKHTDSATNFHFRSSFTICLKTDDTYHVLQEQDGF 120

Query: 127 LFILSNSFKNLGNVVKICCLQPPLNETFSYDLRAETQDLPWFYNLP 173
           LFILSNSFKNLGNVVKICCLQPPLNETFSYDLRAETQDLPWFYNLP
Sbjct: 121 LFILSNSFKNLGNVVKICCLQPPLNETFSYDLRAETQDLPWFYNLP 166

BLAST of Csa5G418270 vs. NCBI nr
Match: gi|659121126|ref|XP_008460511.1| (PREDICTED: E3 ubiquitin-protein ligase SINA-like 7 [Cucumis melo])

HSP 1 Score: 204.5 bits (519), Expect = 1.5e-49
Identity = 97/111 (87.39%), Postives = 104/111 (93.69%), Query Frame = 1

Query: 56  GNGSDHKKTCLYAPCLCPYFDCKFMASSKQLSLHFSNKHTDSATNFHFRSSFTICLKTDD 115
           GN SDH+KTCLYAPCLCPY DCKF+AS+KQLSLHFSNKHT+SATNFHF SSFTICLKT+D
Sbjct: 186 GNESDHEKTCLYAPCLCPYSDCKFIASAKQLSLHFSNKHTNSATNFHFSSSFTICLKTND 245

Query: 116 TYHVLQEQDGFLFILSNSFKNLGNVVKICCLQPP-LNETFSYDLRAETQDL 166
           TYHVLQEQDG LFILSNS +NLG+VVKICCLQPP L ETFSYDLRAETQDL
Sbjct: 246 TYHVLQEQDGVLFILSNSSENLGSVVKICCLQPPSLKETFSYDLRAETQDL 296

BLAST of Csa5G418270 vs. NCBI nr
Match: gi|645246389|ref|XP_008229332.1| (PREDICTED: putative E3 ubiquitin-protein ligase SINA-like 6 isoform X1 [Prunus mume])

HSP 1 Score: 109.0 bits (271), Expect = 8.4e-21
Identity = 51/107 (47.66%), Postives = 71/107 (66.36%), Query Frame = 1

Query: 59  SDHKKTCLYAPCLCPYFDCKFMASSKQLSLHFSNKHTDSATNFHFRSSFTICLKTDDTYH 118
           ++H+K C+Y+PC CP   C F++SSKQL LHF+  H D AT F +  +F+I L   D + 
Sbjct: 257 NEHEKACVYSPCSCPLSGCNFISSSKQLYLHFTVSHVDYATRFLYGINFSITLNIKDKFL 316

Query: 119 VLQE-QDGFLFILSNSFKNLGNVVKICCLQPPLNETFSYDLRAETQD 165
           VLQE ++G LFIL N  + LGN+V +CC+QP     F YDL A+T +
Sbjct: 317 VLQEKREGILFILDNHAEKLGNLVSLCCIQPIFKGGFYYDLLAKTNE 363

BLAST of Csa5G418270 vs. NCBI nr
Match: gi|694392686|ref|XP_009371812.1| (PREDICTED: putative E3 ubiquitin-protein ligase SINA-like 6 isoform X1 [Pyrus x bretschneideri])

HSP 1 Score: 109.0 bits (271), Expect = 8.4e-21
Identity = 52/107 (48.60%), Postives = 70/107 (65.42%), Query Frame = 1

Query: 59  SDHKKTCLYAPCLCPYFDCKFMASSKQLSLHFSNKHTDSATNFHFRSSFTICLKTDDTYH 118
           ++H+KTC+++PC CP   C F++ SKQL  HFS+ H +SAT F +   F+I L   D  H
Sbjct: 274 NEHEKTCIFSPCSCPQSGCNFVSPSKQLYQHFSSNHVNSATRFRYNCVFSIMLFHKDKSH 333

Query: 119 VLQEQ-DGFLFILSNSFKNLGNVVKICCLQPPLNETFSYDLRAETQD 165
            LQEQ DG LFIL N  ++LGN+V I C+QP     F YDL A T++
Sbjct: 334 TLQEQNDGTLFILDNKEESLGNIVSISCIQPSFMGGFYYDLLARTKN 380

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
A0A0A0KTM5_CUCSA6.6e-97100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_5G418270 PE=4 SV=1[more]
B9T326_RICCO1.9e-1942.75E3 ubiquitin-protein ligase OS=Ricinus communis GN=RCOM_0327010 PE=3 SV=1[more]
M5XIS0_PRUPE2.5e-1947.62E3 ubiquitin-protein ligase OS=Prunus persica GN=PRUPE_ppa006254mg PE=3 SV=1[more]
A5BK03_VITVI4.2e-1940.63Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_032233 PE=4 SV=1[more]
A0A151RZG6_CAJCA4.2e-1946.60E3 ubiquitin-protein ligase OS=Cajanus cajan GN=KK1_030427 PE=3 SV=1[more]
Match NameE-valueIdentityDescription
AT5G37870.12.8e-0628.70 Protein with RING/U-box and TRAF-like domains[more]
Match NameE-valueIdentityDescription
gi|700195864|gb|KGN51041.1|9.4e-97100.00hypothetical protein Csa_5G418270 [Cucumis sativus][more]
gi|449445208|ref|XP_004140365.1|2.2e-93100.00PREDICTED: E3 ubiquitin-protein ligase SINA-like 10 [Cucumis sativus][more]
gi|659121126|ref|XP_008460511.1|1.5e-4987.39PREDICTED: E3 ubiquitin-protein ligase SINA-like 7 [Cucumis melo][more]
gi|645246389|ref|XP_008229332.1|8.4e-2147.66PREDICTED: putative E3 ubiquitin-protein ligase SINA-like 6 isoform X1 [Prunus m... [more]
gi|694392686|ref|XP_009371812.1|8.4e-2148.60PREDICTED: putative E3 ubiquitin-protein ligase SINA-like 6 isoform X1 [Pyrus x ... [more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR004162SINA-like
IPR008974TRAF-like
IPR013323SIAH-type domain
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Vocabulary: Biological Process
TermDefinition
GO:0006511ubiquitin-dependent protein catabolic process
GO:0007275multicellular organism development
GO:0016567protein ubiquitination
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO:0004842ubiquitin-protein transferase activity
GO:0008270zinc ion binding
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007275 multicellular organism development
biological_process GO:0016567 protein ubiquitination
biological_process GO:0006511 ubiquitin-dependent protein catabolic process
biological_process GO:0008150 biological_process
cellular_component GO:0005634 nucleus
cellular_component GO:0005575 cellular_component
molecular_function GO:0005515 protein binding
molecular_function GO:0004842 ubiquitin-protein transferase activity
molecular_function GO:0008270 zinc ion binding
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa5G418270.1Csa5G418270.1mRNA


Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR004162E3 ubiquitin-protein ligase SIN-likePANTHERPTHR10315SEVEN IN ABSENTIA HOMOLOGcoord: 56..163
score: 1.8
IPR008974TRAF-likeunknownSSF49599TRAF domain-likecoord: 59..165
score: 2.88
IPR013323SIAH-type domainGENE3DG3DSA:3.90.890.10coord: 59..90
score: 1.
NoneNo IPR availablePANTHERPTHR10315:SF43E3 UBIQUITIN-PROTEIN LIGASEcoord: 56..163
score: 1.8