Csa5G418270 (gene) Cucumber (Chinese Long) v2
The following sequences are available for this feature:
Legend: CDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGAAATTTAGTGTGAGAATGGACATATTGCATGCTCTTCCTGCTGCAACAAACTTAAGAATGAATGTGCAACCTGCCCGTGGCCTATTGGCTATAATCGTTGTCGAGCAGTTGAGAAGGTTCTTGAATCCATTAAATTTCCCTGCAAACAATCAAAGTTTGGATGGCAACGGAAGTGACCACAAAAAGACATGCCTATATGCCCCTTGTTTATGCCCCTATTTTGATTGCAAATTTATGGCTTCATCTAAGCAGTTATCATTACACTTTAGCAATAAACATACAGACTCCGCTACCAACTTCCATTTCAGATCTAGCTTCACCATATGCTTAAAAACTGACGATACTTACCACGTCCTTCAAGAACAAGATGGTTTTCTTTTTATTCTCAGCAATAGTTTCAAAAATCTGGGAAATGTTGTTAAAATTTGTTGTCTTCAACCTCCTTTGAATGAAACATTTTCTTATGATCTACGTGCGGAAACTCAGGACCTTCCCTGGTTTTACAATCTTCCATGA ATGAAATTTAGTGTGAGAATGGACATATTGCATGCTCTTCCTGCTGCAACAAACTTAAGAATGAATGTGCAACCTGCCCGTGGCCTATTGGCTATAATCGTTGTCGAGCAGTTGAGAAGGTTCTTGAATCCATTAAATTTCCCTGCAAACAATCAAAGTTTGGATGGCAACGGAAGTGACCACAAAAAGACATGCCTATATGCCCCTTGTTTATGCCCCTATTTTGATTGCAAATTTATGGCTTCATCTAAGCAGTTATCATTACACTTTAGCAATAAACATACAGACTCCGCTACCAACTTCCATTTCAGATCTAGCTTCACCATATGCTTAAAAACTGACGATACTTACCACGTCCTTCAAGAACAAGATGGTTTTCTTTTTATTCTCAGCAATAGTTTCAAAAATCTGGGAAATGTTGTTAAAATTTGTTGTCTTCAACCTCCTTTGAATGAAACATTTTCTTATGATCTACGTGCGGAAACTCAGGACCTTCCCTGGTTTTACAATCTTCCATGA ATGAAATTTAGTGTGAGAATGGACATATTGCATGCTCTTCCTGCTGCAACAAACTTAAGAATGAATGTGCAACCTGCCCGTGGCCTATTGGCTATAATCGTTGTCGAGCAGTTGAGAAGGTTCTTGAATCCATTAAATTTCCCTGCAAACAATCAAAGTTTGGATGGCAACGGAAGTGACCACAAAAAGACATGCCTATATGCCCCTTGTTTATGCCCCTATTTTGATTGCAAATTTATGGCTTCATCTAAGCAGTTATCATTACACTTTAGCAATAAACATACAGACTCCGCTACCAACTTCCATTTCAGATCTAGCTTCACCATATGCTTAAAAACTGACGATACTTACCACGTCCTTCAAGAACAAGATGGTTTTCTTTTTATTCTCAGCAATAGTTTCAAAAATCTGGGAAATGTTGTTAAAATTTGTTGTCTTCAACCTCCTTTGAATGAAACATTTTCTTATGATCTACGTGCGGAAACTCAGGACCTTCCCTGGTTTTACAATCTTCCATGA MKFSVRMDILHALPAATNLRMNVQPARGLLAIIVVEQLRRFLNPLNFPANNQSLDGNGSDHKKTCLYAPCLCPYFDCKFMASSKQLSLHFSNKHTDSATNFHFRSSFTICLKTDDTYHVLQEQDGFLFILSNSFKNLGNVVKICCLQPPLNETFSYDLRAETQDLPWFYNLP*
BLAST of Csa5G418270 vs. TrEMBL
Match: A0A0A0KTM5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G418270 PE=4 SV=1) HSP 1 Score: 361.3 bits (926), Expect = 6.6e-97 Identity = 172/172 (100.00%), Postives = 172/172 (100.00%), Query Frame = 1
BLAST of Csa5G418270 vs. TrEMBL
Match: B9T326_RICCO (E3 ubiquitin-protein ligase OS=Ricinus communis GN=RCOM_0327010 PE=3 SV=1) HSP 1 Score: 104.0 bits (258), Expect = 1.9e-19 Identity = 56/131 (42.75%), Postives = 80/131 (61.07%), Query Frame = 1
BLAST of Csa5G418270 vs. TrEMBL
Match: M5XIS0_PRUPE (E3 ubiquitin-protein ligase OS=Prunus persica GN=PRUPE_ppa006254mg PE=3 SV=1) HSP 1 Score: 103.6 bits (257), Expect = 2.5e-19 Identity = 50/105 (47.62%), Postives = 68/105 (64.76%), Query Frame = 1
BLAST of Csa5G418270 vs. TrEMBL
Match: A5BK03_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_032233 PE=4 SV=1) HSP 1 Score: 102.8 bits (255), Expect = 4.2e-19 Identity = 52/128 (40.62%), Postives = 76/128 (59.38%), Query Frame = 1
BLAST of Csa5G418270 vs. TrEMBL
Match: A0A151RZG6_CAJCA (E3 ubiquitin-protein ligase OS=Cajanus cajan GN=KK1_030427 PE=3 SV=1) HSP 1 Score: 102.8 bits (255), Expect = 4.2e-19 Identity = 48/103 (46.60%), Postives = 67/103 (65.05%), Query Frame = 1
BLAST of Csa5G418270 vs. TAIR10
Match: AT5G37870.1 (AT5G37870.1 Protein with RING/U-box and TRAF-like domains) HSP 1 Score: 49.3 bits (116), Expect = 2.8e-06 Identity = 31/108 (28.70%), Postives = 45/108 (41.67%), Query Frame = 1
BLAST of Csa5G418270 vs. NCBI nr
Match: gi|700195864|gb|KGN51041.1| (hypothetical protein Csa_5G418270 [Cucumis sativus]) HSP 1 Score: 361.3 bits (926), Expect = 9.4e-97 Identity = 172/172 (100.00%), Postives = 172/172 (100.00%), Query Frame = 1
BLAST of Csa5G418270 vs. NCBI nr
Match: gi|449445208|ref|XP_004140365.1| (PREDICTED: E3 ubiquitin-protein ligase SINA-like 10 [Cucumis sativus]) HSP 1 Score: 350.1 bits (897), Expect = 2.2e-93 Identity = 166/166 (100.00%), Postives = 166/166 (100.00%), Query Frame = 1
BLAST of Csa5G418270 vs. NCBI nr
Match: gi|659121126|ref|XP_008460511.1| (PREDICTED: E3 ubiquitin-protein ligase SINA-like 7 [Cucumis melo]) HSP 1 Score: 204.5 bits (519), Expect = 1.5e-49 Identity = 97/111 (87.39%), Postives = 104/111 (93.69%), Query Frame = 1
BLAST of Csa5G418270 vs. NCBI nr
Match: gi|645246389|ref|XP_008229332.1| (PREDICTED: putative E3 ubiquitin-protein ligase SINA-like 6 isoform X1 [Prunus mume]) HSP 1 Score: 109.0 bits (271), Expect = 8.4e-21 Identity = 51/107 (47.66%), Postives = 71/107 (66.36%), Query Frame = 1
BLAST of Csa5G418270 vs. NCBI nr
Match: gi|694392686|ref|XP_009371812.1| (PREDICTED: putative E3 ubiquitin-protein ligase SINA-like 6 isoform X1 [Pyrus x bretschneideri]) HSP 1 Score: 109.0 bits (271), Expect = 8.4e-21 Identity = 52/107 (48.60%), Postives = 70/107 (65.42%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene:
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