CsaV3_5G023990 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_5G023990
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	E3 ubiquitin-protein ligase
Location	chr5 : 18613413 .. 18614071 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAATTTAGTGTGAGAATGGACATATTGCATGCTCTTCCTGCTGCAACAAACTTAAGAATGAATGTGCAACCTGCCCGTGGCCTATTGGCTATAATCGTTGTCGAGCAGTTGAGAAGGTTCTTGAATCCATTAAATTTCCCTGCAAACAATCAAAGTTTGGATGGCAACGGAAGTGACCACAAAAAGACATGCCTATATGCCCCTTGTTTATGCCCCTATTTTGATTGCAAATTTATGGCTTCATCTAAGCAGTTATCATTACACTTTAGCAATAAACATACAGACTCCGCTACCAACTTCCATTTCAGATCTAGCTTCACCATATGCTTAAAAACTGACGATACTTACCACGTCCTTCAAGAACAAGATGGTTTTCTTTTTATTCTCAGCAATAGTTTCAAAAATCTGGGAAATGTTGTTAAAATTTGTTGTCTTCAACCTCCTTTGAATGAAACATTTTCTTATGATCTACGTGCGGAAACTCAGGACCTTCCCTGGTTTTACAATCTTCCATGAAGAACATTCAATCGTCATCAGATTATTGTCACTCTACGAGGGTTCTTATGATTCCACGTGATTTATTTAGTTCTTCTGGCATGATTAAGTTGAATATTTGCATATGGCAAAATGGTTCATCTCCGGTGCACCATAGATGA

mRNA sequence

ATGAAATTTAGTGTGAGAATGGACATATTGCATGCTCTTCCTGCTGCAACAAACTTAAGAATGAATGTGCAACCTGCCCGTGGCCTATTGGCTATAATCGTTGTCGAGCAGTTGAGAAGGTTCTTGAATCCATTAAATTTCCCTGCAAACAATCAAAGTTTGGATGGCAACGGAAGTGACCACAAAAAGACATGCCTATATGCCCCTTGTTTATGCCCCTATTTTGATTGCAAATTTATGGCTTCATCTAAGCAGTTATCATTACACTTTAGCAATAAACATACAGACTCCGCTACCAACTTCCATTTCAGATCTAGCTTCACCATATGCTTAAAAACTGACGATACTTACCACGTCCTTCAAGAACAAGATGGACCTTCCCTGGTTTTACAATCTTCCATGAAGAACATTCAATCGTCATCAGATTATTGTCACTCTACGAGGGTTCTTATGATTCCACGTGATTTATTTAGTTCTTCTGGCATGATTAAGTTGAATATTTGCATATGGCAAAATGGTTCATCTCCGGTGCACCATAGATGA

Coding sequence (CDS)

ATGAAATTTAGTGTGAGAATGGACATATTGCATGCTCTTCCTGCTGCAACAAACTTAAGAATGAATGTGCAACCTGCCCGTGGCCTATTGGCTATAATCGTTGTCGAGCAGTTGAGAAGGTTCTTGAATCCATTAAATTTCCCTGCAAACAATCAAAGTTTGGATGGCAACGGAAGTGACCACAAAAAGACATGCCTATATGCCCCTTGTTTATGCCCCTATTTTGATTGCAAATTTATGGCTTCATCTAAGCAGTTATCATTACACTTTAGCAATAAACATACAGACTCCGCTACCAACTTCCATTTCAGATCTAGCTTCACCATATGCTTAAAAACTGACGATACTTACCACGTCCTTCAAGAACAAGATGGACCTTCCCTGGTTTTACAATCTTCCATGAAGAACATTCAATCGTCATCAGATTATTGTCACTCTACGAGGGTTCTTATGATTCCACGTGATTTATTTAGTTCTTCTGGCATGATTAAGTTGAATATTTGCATATGGCAAAATGGTTCATCTCCGGTGCACCATAGATGA

Protein sequence

MKFSVRMDILHALPAATNLRMNVQPARGLLAIIVVEQLRRFLNPLNFPANNQSLDGNGSDHKKTCLYAPCLCPYFDCKFMASSKQLSLHFSNKHTDSATNFHFRSSFTICLKTDDTYHVLQEQDGPSLVLQSSMKNIQSSSDYCHSTRVLMIPRDLFSSSGMIKLNICIWQNGSSPVHHR

Homology

[Close]

BLAST of CsaV3_5G023990 vs. NCBI nr
Match: KGN51041.1 (hypothetical protein Csa_5G418270 [Cucumis sativus])

HSP 1 Score: 268.1 bits (684), Expect = 2.2e-68
Identity = 130/144 (90.28%), Postives = 134/144 (93.06%), Query Frame = 0


Query: 1   MKFSVRMDILHALPAATNLRMNVQPARGLLAIIVVEQLRRFLNPLNFPANNQSLDGNGSD 60
           MKFSVRMDILHALPAATNLRMNVQPARGLLAIIVVEQLRRFLNPLNFPANNQSLDGNGSD
Sbjct: 1   MKFSVRMDILHALPAATNLRMNVQPARGLLAIIVVEQLRRFLNPLNFPANNQSLDGNGSD 60

Query: 61  HKKTCLYAPCLCPYFDCKFMASSKQLSLHFSNKHTDSATNFHFRSSFTICLKTDDTYHVL 120
           HKKTCLYAPCLCPYFDCKFMASSKQLSLHFSNKHTDSATNFHFRSSFTICLKTDDTYHVL
Sbjct: 61  HKKTCLYAPCLCPYFDCKFMASSKQLSLHFSNKHTDSATNFHFRSSFTICLKTDDTYHVL 120

Query: 121 QEQDGPSLVLQSSMKNIQSSSDYC 145
           QEQDG   +L +S KN+ +    C
Sbjct: 121 QEQDGFLFILSNSFKNLGNVVKIC 144

[Close]

BLAST of CsaV3_5G023990 vs. NCBI nr
Match: XP_004140365.1 (PREDICTED: E3 ubiquitin-protein ligase SINA-like 10 [Cucumis sativus])

HSP 1 Score: 256.9 bits (655), Expect = 5.1e-65
Identity = 124/138 (89.86%), Postives = 128/138 (92.75%), Query Frame = 0


Query: 7   MDILHALPAATNLRMNVQPARGLLAIIVVEQLRRFLNPLNFPANNQSLDGNGSDHKKTCL 66
           MDILHALPAATNLRMNVQPARGLLAIIVVEQLRRFLNPLNFPANNQSLDGNGSDHKKTCL
Sbjct: 1   MDILHALPAATNLRMNVQPARGLLAIIVVEQLRRFLNPLNFPANNQSLDGNGSDHKKTCL 60

Query: 67  YAPCLCPYFDCKFMASSKQLSLHFSNKHTDSATNFHFRSSFTICLKTDDTYHVLQEQDGP 126
           YAPCLCPYFDCKFMASSKQLSLHFSNKHTDSATNFHFRSSFTICLKTDDTYHVLQEQDG 
Sbjct: 61  YAPCLCPYFDCKFMASSKQLSLHFSNKHTDSATNFHFRSSFTICLKTDDTYHVLQEQDGF 120

Query: 127 SLVLQSSMKNIQSSSDYC 145
             +L +S KN+ +    C
Sbjct: 121 LFILSNSFKNLGNVVKIC 138

[Close]

BLAST of CsaV3_5G023990 vs. NCBI nr
Match: XP_008460511.1 (PREDICTED: E3 ubiquitin-protein ligase SINA-like 7 [Cucumis melo])

HSP 1 Score: 222.6 bits (566), Expect = 1.1e-54
Identity = 114/165 (69.09%), Postives = 119/165 (72.12%), Query Frame = 0


Query: 56  GNGSDHKKTCLYAPCLCPYFDCKFMASSKQLSLHFSNKHTDSATNFHFRSSFTICLKTDD 115
           GN SDH+KTCLYAPCLCPY DCKF+AS+KQLSLHFSNKHT+SATNFHF SSFTICLKT+D
Sbjct: 186 GNESDHEKTCLYAPCLCPYSDCKFIASAKQLSLHFSNKHTNSATNFHFSSSFTICLKTND 245

Query: 116 TYHVLQEQDGP----------------------------------------SLVLQSSMK 175
           TYHVLQEQDG                                         SLVLQSSMK
Sbjct: 246 TYHVLQEQDGVLFILSNSSENLGSVVKICCLQPPSLKETFSYDLRAETQDLSLVLQSSMK 305

Query: 176 NIQSSSDYCHSTRVLMIPRDLFSSSGMIKLNICIWQNGSSPVHHR 181
           NIQSSSD CHSTR LMIPRDLFSSSGMIKLNICIWQNGSSPVHHR
Sbjct: 306 NIQSSSDCCHSTRFLMIPRDLFSSSGMIKLNICIWQNGSSPVHHR 350

[Close]

BLAST of CsaV3_5G023990 vs. NCBI nr
Match: XP_022141698.1 (E3 ubiquitin-protein ligase SINA-like 10 [Momordica charantia])

HSP 1 Score: 177.9 bits (450), Expect = 3.0e-41
Identity = 93/163 (57.06%), Postives = 104/163 (63.80%), Query Frame = 0


Query: 56  GNGSDHKKTCLYAPCLCPYFDCKFMASSKQLSLHFSNKHTDSATNFHFRSSFTICLKTDD 115
           GN S+H+KTCLYAPCLCP  DC F ASSKQLSLHFS+KH +SATNF F SSFTICLKTDD
Sbjct: 213 GNESEHEKTCLYAPCLCPLSDCNFTASSKQLSLHFSSKHKNSATNFQFSSSFTICLKTDD 272

Query: 116 TYHVLQEQDGP-----------------------------------------SLVLQSSM 175
           +YH+LQEQD                                           SL L SSM
Sbjct: 273 SYHILQEQDDGILFILSNSFEHLGSAVKVCCLRPNFLKEAFTYDLKAETQDLSLFLHSSM 332

Query: 176 KNIQSSSDYCHSTRVLMIPRDLFSSSGMIKLNICIWQNGSSPV 178
           KNI+SSSD CHSTR L+IP DLF S G IKL+ICIW++GSSPV
Sbjct: 333 KNIKSSSDCCHSTRFLLIPSDLFDSRGQIKLDICIWRDGSSPV 375

[Close]

BLAST of CsaV3_5G023990 vs. NCBI nr
Match: XP_022956630.1 (E3 ubiquitin-protein ligase SINA-like 10 [Cucurbita moschata])

HSP 1 Score: 167.2 bits (422), Expect = 5.3e-38
Identity = 93/162 (57.41%), Postives = 102/162 (62.96%), Query Frame = 0


Query: 56  GNGSDHKKTCLYAPCLCPYFDCKFMASSKQLSLHFSNKHTDSATNFHFRSSFTICLKTDD 115
           G+ SDH+K CL+APC CP  DC F+ASSKQLSLHFS+KHTDSA +F F SSFTICL  +D
Sbjct: 188 GSESDHEKKCLHAPCKCPLPDCNFVASSKQLSLHFSSKHTDSAISFQFSSSFTICLNAND 247

Query: 116 TYHVLQEQ-DG----------------------------------------PSLVLQSSM 175
            Y VLQEQ DG                                         SLVLQSSM
Sbjct: 248 NYRVLQEQGDGILFILSNSFDHLGNAVKVCCLRPPSLKEAFSYDLRVETQDLSLVLQSSM 307

Query: 176 KNIQSSSDYCHSTRVLMIPRDLFSSSGMIKLNICIWQNGSSP 177
           KNIQSSSD C STR L+IPRDLFSSSGMIKLNICIWQN  +P
Sbjct: 308 KNIQSSSDCCPSTRFLLIPRDLFSSSGMIKLNICIWQNTGAP 349

[Close]

BLAST of CsaV3_5G023990 vs. TAIR10
Match: AT5G37930.1 (Protein with RING/U-box and TRAF-like domains)

HSP 1 Score: 54.3 bits (129), Expect = 9.1e-08
Identity = 26/77 (33.77%), Postives = 41/77 (53.25%), Query Frame = 0


Query: 56  GNGSDHKKTCLYAPCLCPYFDCKFMASSKQLSLHFSNKHTDSATNFHFRSSFTICLKTDD 115
           GN   H++ C++ PC CP  DC +    K L+ H   +H D   +F + +  TI L  + 
Sbjct: 185 GNRFSHEQVCVFTPCSCPILDCHYTGYYKDLNNHVRAEHKDDLISFVWNTRLTISLDLNK 244

Query: 116 TYHVLQEQ-DGPSLVLQ 132
              +LQE+ DG  +V+Q
Sbjct: 245 KTTILQEENDGHVIVVQ 261

[Close]

BLAST of CsaV3_5G023990 vs. Swiss-Prot
Match: sp|Q84K34|SIL10_ARATH (E3 ubiquitin-protein ligase SINA-like 10 OS=Arabidopsis thaliana OX=3702 GN=At5g37930 PE=2 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 1.6e-06
Identity = 26/77 (33.77%), Postives = 41/77 (53.25%), Query Frame = 0


Query: 56  GNGSDHKKTCLYAPCLCPYFDCKFMASSKQLSLHFSNKHTDSATNFHFRSSFTICLKTDD 115
           GN   H++ C++ PC CP  DC +    K L+ H   +H D   +F + +  TI L  + 
Sbjct: 185 GNRFSHEQVCVFTPCSCPILDCHYTGYYKDLNNHVRAEHKDDLISFVWNTRLTISLDLNK 244

Query: 116 TYHVLQEQ-DGPSLVLQ 132
              +LQE+ DG  +V+Q
Sbjct: 245 KTTILQEENDGHVIVVQ 261

[Close]

BLAST of CsaV3_5G023990 vs. TrEMBL
Match: tr|A0A0A0KTM5|A0A0A0KTM5_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G418270 PE=4 SV=1)

HSP 1 Score: 268.1 bits (684), Expect = 1.5e-68
Identity = 130/144 (90.28%), Postives = 134/144 (93.06%), Query Frame = 0


Query: 1   MKFSVRMDILHALPAATNLRMNVQPARGLLAIIVVEQLRRFLNPLNFPANNQSLDGNGSD 60
           MKFSVRMDILHALPAATNLRMNVQPARGLLAIIVVEQLRRFLNPLNFPANNQSLDGNGSD
Sbjct: 1   MKFSVRMDILHALPAATNLRMNVQPARGLLAIIVVEQLRRFLNPLNFPANNQSLDGNGSD 60

Query: 61  HKKTCLYAPCLCPYFDCKFMASSKQLSLHFSNKHTDSATNFHFRSSFTICLKTDDTYHVL 120
           HKKTCLYAPCLCPYFDCKFMASSKQLSLHFSNKHTDSATNFHFRSSFTICLKTDDTYHVL
Sbjct: 61  HKKTCLYAPCLCPYFDCKFMASSKQLSLHFSNKHTDSATNFHFRSSFTICLKTDDTYHVL 120

Query: 121 QEQDGPSLVLQSSMKNIQSSSDYC 145
           QEQDG   +L +S KN+ +    C
Sbjct: 121 QEQDGFLFILSNSFKNLGNVVKIC 144

[Close]

BLAST of CsaV3_5G023990 vs. TrEMBL
Match: tr|A0A1S3CD49|A0A1S3CD49_CUCME (E3 ubiquitin-protein ligase OS=Cucumis melo OX=3656 GN=LOC103499310 PE=3 SV=1)

HSP 1 Score: 222.6 bits (566), Expect = 7.0e-55
Identity = 114/165 (69.09%), Postives = 119/165 (72.12%), Query Frame = 0


Query: 56  GNGSDHKKTCLYAPCLCPYFDCKFMASSKQLSLHFSNKHTDSATNFHFRSSFTICLKTDD 115
           GN SDH+KTCLYAPCLCPY DCKF+AS+KQLSLHFSNKHT+SATNFHF SSFTICLKT+D
Sbjct: 186 GNESDHEKTCLYAPCLCPYSDCKFIASAKQLSLHFSNKHTNSATNFHFSSSFTICLKTND 245

Query: 116 TYHVLQEQDGP----------------------------------------SLVLQSSMK 175
           TYHVLQEQDG                                         SLVLQSSMK
Sbjct: 246 TYHVLQEQDGVLFILSNSSENLGSVVKICCLQPPSLKETFSYDLRAETQDLSLVLQSSMK 305

Query: 176 NIQSSSDYCHSTRVLMIPRDLFSSSGMIKLNICIWQNGSSPVHHR 181
           NIQSSSD CHSTR LMIPRDLFSSSGMIKLNICIWQNGSSPVHHR
Sbjct: 306 NIQSSSDCCHSTRFLMIPRDLFSSSGMIKLNICIWQNGSSPVHHR 350

[Close]

BLAST of CsaV3_5G023990 vs. TrEMBL
Match: tr|A0A2P6RGT3|A0A2P6RGT3_ROSCH (E3 ubiquitin-protein ligase OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr3g0493571 PE=3 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 4.8e-19
Identity = 57/180 (31.67%), Postives = 93/180 (51.67%), Query Frame = 0


Query: 34  VVEQLRRFLNPLNFPANNQSLDGNGSDHKKTCLYAPCLCPYFDCKFMASSKQLSLHFSNK 93
           V+E +R     + +    +    N ++H+K C+++PC CP+  C F++S+K+L  HFS+ 
Sbjct: 174 VLESIRMSCQNIKYGCKERMTCNNKNEHEKACMHSPCSCPHSGCNFVSSTKKLYQHFSSN 233

Query: 94  HTDSATNFHFRSSFTICLKTDDTYHVLQEQ-DGPSLVLQSSMKNI--------------- 153
           H +SAT F + SSF+I +  +D + VLQEQ DG   +L ++ + +               
Sbjct: 234 HLNSATRFLYNSSFSITINFNDKFLVLQEQNDGILFILDNTTEILGNMVRLSCIQPRFMG 293

Query: 154 ---------------------QSSSDYCH---STRVLMIPRDLFSSSGMIKLNICIWQNG 174
                                 S+  +CH   S+R L+IP D FSS G +K++ICIW+NG
Sbjct: 294 GFFYDLTAKTKGCLLKLQSFTNSTPSHCHSPTSSRSLIIPGDFFSSCGQLKMDICIWRNG 353

[Close]

BLAST of CsaV3_5G023990 vs. TrEMBL
Match: tr|A0A2P4HMZ2|A0A2P4HMZ2_QUESU (E3 ubiquitin-protein ligase OS=Quercus suber OX=58331 GN=CFP56_61552 PE=3 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 9.0e-18
Identity = 60/157 (38.22%), Postives = 77/157 (49.04%), Query Frame = 0


Query: 59  SDHKKTCLYAPCLCPYFDCKFMASSKQLSLHFSNKHTDSATNFHFRSSFTICLKTDDTYH 118
           SDH+KTC+YAPC CP   CKF+ASSKQ+ +HFS+KHT+SA  F + S+F + L   D + 
Sbjct: 211 SDHEKTCIYAPCSCPLSHCKFIASSKQIYVHFSSKHTNSAIGFKYDSNFFVSLTLTDKFL 270

Query: 119 VLQEQ-----------------------------------------DGPSLVLQSSMKNI 175
           VLQEQ                                          G SL L+S  KN 
Sbjct: 271 VLQEQSNGVLFVLNNCVDHRGNVVAINCVGPSSTTGGFSYGLAVKTQGSSLRLESFTKNS 330

[Close]

BLAST of CsaV3_5G023990 vs. TrEMBL
Match: tr|A0A2N9IJY6|A0A2N9IJY6_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS52261 PE=4 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 1.3e-16
Identity = 58/172 (33.72%), Postives = 80/172 (46.51%), Query Frame = 0


Query: 51  NQSLDGNGSDHKKTCLYAPCLCPYFDCKFMASSKQLSLHFSNKHTDSATNFHFRSSFTIC 110
           N+++D   +DH++TC YAPC CP  DC F+ SS QLSLHFS+KH DS   F + S   + 
Sbjct: 469 NETVDYIDNDHEETCTYAPCSCPLPDCNFVGSSDQLSLHFSSKHWDSGRRFRYNSPLAVS 528

Query: 111 LKTDDTYHVLQ-EQDG----------------------------------------PSLV 170
           L  ++ + VLQ E+DG                                         SL 
Sbjct: 529 LGMNEQFLVLQAEEDGILFLLYKGVESIGNTVMITCIGPNSSKERFLYDLVSGRGSSSLR 588

Query: 171 LQSSMKNIQSSSDYCHSTRVLMIPRDLFSSSGMIKLNICIWQNG--SSPVHH 180
           L+S  +N     +  H T  L+IP   F SSG I L++CIW +    S + H
Sbjct: 589 LKSVTQNFPGRVEDFHPTEFLLIPFHFFGSSGHINLDVCIWNSAELGSDIEH 640

The following BLAST results are available for this feature:

BLAST of CsaV3_5G023990 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN51041.1	2.2e-68	90.28	hypothetical protein Csa_5G418270 [Cucumis sativus]	[more]
XP_004140365.1	5.1e-65	89.86	PREDICTED: E3 ubiquitin-protein ligase SINA-like 10 [Cucumis sativus]	[more]
XP_008460511.1	1.1e-54	69.09	PREDICTED: E3 ubiquitin-protein ligase SINA-like 7 [Cucumis melo]	[more]
XP_022141698.1	3.0e-41	57.06	E3 ubiquitin-protein ligase SINA-like 10 [Momordica charantia]	[more]
XP_022956630.1	5.3e-38	57.41	E3 ubiquitin-protein ligase SINA-like 10 [Cucurbita moschata]	[more]

BLAST of CsaV3_5G023990 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G37930.1	9.1e-08	33.77	Protein with RING/U-box and TRAF-like domains	[more]

BLAST of CsaV3_5G023990 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q84K34\|SIL10_ARATH	1.6e-06	33.77	E3 ubiquitin-protein ligase SINA-like 10 OS=Arabidopsis thaliana OX=3702 GN=At5g...	[more]

BLAST of CsaV3_5G023990 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KTM5\|A0A0A0KTM5_CUCSA	1.5e-68	90.28	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G418270 PE=4 SV=1	[more]
tr\|A0A1S3CD49\|A0A1S3CD49_CUCME	7.0e-55	69.09	E3 ubiquitin-protein ligase OS=Cucumis melo OX=3656 GN=LOC103499310 PE=3 SV=1	[more]
tr\|A0A2P6RGT3\|A0A2P6RGT3_ROSCH	4.8e-19	31.67	E3 ubiquitin-protein ligase OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr3g0493571 ...	[more]
tr\|A0A2P4HMZ2\|A0A2P4HMZ2_QUESU	9.0e-18	38.22	E3 ubiquitin-protein ligase OS=Quercus suber OX=58331 GN=CFP56_61552 PE=3 SV=1	[more]
tr\|A0A2N9IJY6\|A0A2N9IJY6_FAGSY	1.3e-16	33.72	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS52261 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

Vocabulary: **Biological Process**
Term	Definition
GO:0006511	ubiquitin-dependent protein catabolic process
GO:0007275	multicellular organism development

Vocabulary: **Cellular Component**
Term	Definition
GO:0005634	nucleus

Vocabulary: **INTERPRO**
Term	Definition
IPR008974	TRAF-like
IPR004162	SINA-like
IPR013083	Znf_RING/FYVE/PHD

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0007275	multicellular organism development
biological_process	GO:0006511	ubiquitin-dependent protein catabolic process
biological_process	GO:0008150	biological_process
biological_process	GO:0016567	protein ubiquitination
cellular_component	GO:0005634	nucleus
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005515	protein binding
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0004842	ubiquitin-protein transferase activity
molecular_function	GO:0008270	zinc ion binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_5G023990.1	CsaV3_5G023990.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	G3DSA:3.30.40.10		coord: 50..90 e-value: 4.2E-5 score: 25.7
IPR004162	E3 ubiquitin-protein ligase SIN-like	PANTHER	PTHR10315	E3 UBIQUITIN PROTEIN LIGASE SIAH	coord: 57..130
None	No IPR available	PANTHER	PTHR10315:SF43	E3 UBIQUITIN-PROTEIN LIGASE SINA-LIKE 1-RELATED	coord: 57..130
IPR008974	TRAF-like	SUPERFAMILY	SSF49599	TRAF domain-like	coord: 59..169

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsaV3_5G023990	CSPI05G14870	Wild cucumber (PI 183967)	cpicucB284
CsaV3_5G023990	Cucsa.034820	Cucumber (Gy14) v1	cgycucB010
CsaV3_5G023990	CmaCh04G023000	Cucurbita maxima (Rimu)	cmacucB0887
CsaV3_5G023990	CmoCh04G024040	Cucurbita moschata (Rifu)	cmocucB0876
CsaV3_5G023990	Cp4.1LG01g19900	Cucurbita pepo (Zucchini)	cpecucB0545
CsaV3_5G023990	Carg18263	Silver-seed gourd	carcucB0564
CsaV3_5G023990	Cla019768	Watermelon (97103) v1	cucwmB407
CsaV3_5G023990	MELO3C022842	Melon (DHL92) v3.5.1	cucmeB351
CsaV3_5G023990	ClCG03G008740	Watermelon (Charleston Gray)	cucwcgB405
CsaV3_5G023990	Lsi09G009360	Bottle gourd (USVL1VR-Ls)	cuclsiB353
CsaV3_5G023990	MELO3C022842.2	Melon (DHL92) v3.6.1	cucmedB343
CsaV3_5G023990	Cla97C03G059960	Watermelon (97103) v2	cucwmbB386
CsaV3_5G023990	Bhi12G001076	Wax gourd	cucwgoB463

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_5G023990	Silver-seed gourd	carcucB0869
CsaV3_5G023990	Cucumber (Gy14) v2	cgybcucB232
CsaV3_5G023990	Cucurbita maxima (Rimu)	cmacucB0343
CsaV3_5G023990	Cucurbita moschata (Rifu)	cmocucB0337
CsaV3_5G023990	Cucurbita pepo (Zucchini)	cpecucB0225