Cla011684 (gene) Watermelon (97103) v1

NameCla011684
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionSWIb domain-containing protein (AHRD V1 ***- Q1PCH7_SOLCH); contains Interpro domain(s) IPR019835 SWIB domain
LocationChr4 : 6377599 .. 6379248 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTGCCAAAACGGATGAAGATGGGCATTACAGATAACCCAAAGAAGCTTGCCAACTTGATTGATCTTGTTAACCTTCCTTCAACTCTCAGGGAGTTTGTGGGACAGTCCCAAGTTTCTCGTCTGGGATGTTTCAAGTGTGTGTGGTCGTATATCAAAACCAACAATCTTCAGGTTCTTTTTTGTCTTATTTTTATGGGTTTTTTTGTTATCTGCTTTAGATACATATTGATTATGCCGCTATCGACCTGACAGAGACCTCCCTTGTTTAATCTACTTTCAAAATATTTGATGTAGATTCTACGTTTTATGCTGGTGAAAGTATAGATTAAAATGGGGAACAGGGTAGGAGAAGAAAGCCCATAAGTTTAAAGACCCAGGATGAAAAAGAATCTCCTTAAGTGAAAGTTATGAGAAACTGATGGAGGGTCAAGGTCCAAGACAAAATACAGTTAATAAAACCATGTCTTTTCAACGAAATCGTATAGACTGAGAATGAGGTTACAAAGAGAGTCTGATAAAGCCCAACCAGAACTTGGAGGATATTGAAACGTAAAAGATAAACAGCTACAAAATAATTCTAAGTATTCGAGGTACAAGTACCTCCCTGCCTCGAGTATACGCACTCAAGCCTACACCATCTCAACAATTCTCTACTTTCATCCTTTAGCACTCACCCTATTTATGACATCCCCCAACAGTATGCTCTAATAATGTTCCCAACTACTCCCGTCACATTCCTATCCAAGAAGAGATGCTATTGACATTTCTTCAACCATAGGGTCACGTAAGCTTGATTGGCTTACTTTCTTTTTTTTTGTAATATCTGTGAGTGTCCGAGTCAACTTATGTACATCTTGACAAATCTCACTAGATAATCCGCTTGATCCTACAACATTTGGAGGTCAAGAAAACTCGTAGGATATTAAATTTTAAGTAGATGACCACTATGGATTGAACTCATCTCCTCTAAGCCTTTATCAAACTCAATGTCCTTTATTTACTGCTAGGTCAACCATGATGGTTGATTGGCTTACTACTAATACCAACTAACATATATTTTTTCTTATTAAATAAGACCAGAAATTCCTTCAAAAATCTATAAAGTCCTATTATGACTCCCAAAGGCATCTCCTTATGCATAAGGGGAAATAGTATTATAACCCATAAATGAGTTACATGGATGATCTTTGTCCGTCCCAGCAAGCAACCCTTCTACTAAGCCTTTATCCATGCCTCTCAAAATAAGTCTGTTAAGCACATCCACAACCACCCCAAAAGAGAATGATGCTTGATTTTACTTGTAAATTCAATAGCTTTTGGTCTTTGCACTAGTTTGCGGTACACTTTATGACTGTTCCAATGCTATATGATATTATCTTCGGAAGCTGAAAGTACTCGAAACTTTAATGAAGGAGCATTTTTTTTCTTTTCCAAGTGTTATAAATATGTTTCTGCAAACCCATAAGTGGCTTTCTTTATTCTGATAAAAGGTTATGGATGTGTATATTTCTTGCTTAGGATCCGACGAACAAGAATGTGGTCATTTGTGATGATAAGTTAAAGAGTATATTGCTAGGTAAGCCGAAGGTTGAGCTAGCTGAACTTCCTGCACTGATTAAATTACATTTTCCCAAAAACCCCAAGTGA

mRNA sequence

ATGCTGCCAAAACGGATGAAGATGGGCATTACAGATAACCCAAAGAAGCTTGCCAACTTGATTGATCTTGTTAACCTTCCTTCAACTCTCAGGGAGTTTGTGGGACAGTCCCAAGTTTCTCGTCTGGGATGTTTCAAGTGTGTGTGGTCGTATATCAAAACCAACAATCTTCAGGATCCGACGAACAAGAATGTGGTCATTTGTGATGATAAGTTAAAGAGTATATTGCTAGGTAAGCCGAAGGTTGAGCTAGCTGAACTTCCTGCACTGATTAAATTACATTTTCCCAAAAACCCCAAGTGA

Coding sequence (CDS)

ATGCTGCCAAAACGGATGAAGATGGGCATTACAGATAACCCAAAGAAGCTTGCCAACTTGATTGATCTTGTTAACCTTCCTTCAACTCTCAGGGAGTTTGTGGGACAGTCCCAAGTTTCTCGTCTGGGATGTTTCAAGTGTGTGTGGTCGTATATCAAAACCAACAATCTTCAGGATCCGACGAACAAGAATGTGGTCATTTGTGATGATAAGTTAAAGAGTATATTGCTAGGTAAGCCGAAGGTTGAGCTAGCTGAACTTCCTGCACTGATTAAATTACATTTTCCCAAAAACCCCAAGTGA

Protein sequence

MLPKRMKMGITDNPKKLANLIDLVNLPSTLREFVGQSQVSRLGCFKCVWSYIKTNNLQDPTNKNVVICDDKLKSILLGKPKVELAELPALIKLHFPKNPK
BLAST of Cla011684 vs. Swiss-Prot
Match: UAF30_SCHPO (Upstream activation factor subunit spp27 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=spp27 PE=1 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 1.4e-07
Identity = 25/52 (48.08%), Postives = 33/52 (63.46%), Query Frame = 1

Query: 24  VNLPSTLREFVGQSQVSRLGCFKCVWSYIKTNNLQDPTNKNVVICDDKLKSI 76
           + L   L EF+G  Q+SR    K +W YIK ++LQDP +K  ++CDDKLKS+
Sbjct: 121 MKLSPKLAEFLGLEQLSRPQTVKKLWEYIKAHDLQDPNDKRTILCDDKLKSV 172

BLAST of Cla011684 vs. Swiss-Prot
Match: UAF30_YEAST (Upstream activation factor subunit UAF30 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=UAF30 PE=1 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 2.0e-06
Identity = 25/77 (32.47%), Postives = 45/77 (58.44%), Query Frame = 1

Query: 24  VNLPSTLREFVGQSQVSRLGCFKCVWSYIKTNNLQDPTNKNVVICDDKLKSILLGKPKVE 83
           V L  +L   +G+ +++R    + +W+YIK +NLQ+P NK  ++CD+KL+ ++LGK    
Sbjct: 124 VTLSKSLASLLGEHELTRTEVVRRLWAYIKAHNLQNPNNKKEILCDEKLE-LILGK-STN 183

Query: 84  LAELPALIKLHFPKNPK 101
           + E+  ++  H  +  K
Sbjct: 184 MFEMHKILASHMTEPKK 198

BLAST of Cla011684 vs. TrEMBL
Match: A0A0A0L2E1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G493210 PE=4 SV=1)

HSP 1 Score: 191.8 bits (486), Expect = 4.0e-46
Identity = 93/100 (93.00%), Postives = 95/100 (95.00%), Query Frame = 1

Query: 1   MLPKRMKMGITDNPKKLANLIDLVNLPSTLREFVGQSQVSRLGCFKCVWSYIKTNNLQDP 60
           M  KRMKM ITDNPKKLANLIDLVNLPSTLREFVG SQ+SRLGCFKCVWSYIKTNNLQDP
Sbjct: 93  MATKRMKMAITDNPKKLANLIDLVNLPSTLREFVGHSQISRLGCFKCVWSYIKTNNLQDP 152

Query: 61  TNKNVVICDDKLKSILLGKPKVELAELPALIKLHFPKNPK 101
           TNKNVVICD+KLKSILLGKPKVELAELPALIKLHFPKN K
Sbjct: 153 TNKNVVICDEKLKSILLGKPKVELAELPALIKLHFPKNSK 192

BLAST of Cla011684 vs. TrEMBL
Match: A0A151SBL4_CAJCA (Upstream activation factor subunit UAF30 OS=Cajanus cajan GN=KK1_025905 PE=4 SV=1)

HSP 1 Score: 187.2 bits (474), Expect = 9.8e-45
Identity = 88/100 (88.00%), Postives = 95/100 (95.00%), Query Frame = 1

Query: 1   MLPKRMKMGITDNPKKLANLIDLVNLPSTLREFVGQSQVSRLGCFKCVWSYIKTNNLQDP 60
           MLP+RMK  ITDNPKKLANLIDL+NLPSTLREFVGQSQ+SRLGCFKCVWSYIKTNNLQDP
Sbjct: 1   MLPQRMKKAITDNPKKLANLIDLINLPSTLREFVGQSQISRLGCFKCVWSYIKTNNLQDP 60

Query: 61  TNKNVVICDDKLKSILLGKPKVELAELPALIKLHFPKNPK 101
            NKNVV CD+KLKSILLGKP+V+LAELPALIK+HFPK PK
Sbjct: 61  NNKNVVNCDEKLKSILLGKPQVDLAELPALIKMHFPKEPK 100

BLAST of Cla011684 vs. TrEMBL
Match: A0A0B2NVJ3_GLYSO (Upstream activation factor subunit spp27 OS=Glycine soja GN=glysoja_006364 PE=4 SV=1)

HSP 1 Score: 185.3 bits (469), Expect = 3.7e-44
Identity = 88/100 (88.00%), Postives = 94/100 (94.00%), Query Frame = 1

Query: 1   MLPKRMKMGITDNPKKLANLIDLVNLPSTLREFVGQSQVSRLGCFKCVWSYIKTNNLQDP 60
           MLP+RMK  ITDNPKKLANLIDLVNLPSTLREFVGQSQ+SRLGCFKC+WSYIKTNNLQD 
Sbjct: 1   MLPQRMKKAITDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFKCIWSYIKTNNLQDQ 60

Query: 61  TNKNVVICDDKLKSILLGKPKVELAELPALIKLHFPKNPK 101
            NKNVV CD+KLKSILLGKP+VELAELPALIK+HFPK PK
Sbjct: 61  NNKNVVNCDEKLKSILLGKPQVELAELPALIKMHFPKEPK 100

BLAST of Cla011684 vs. TrEMBL
Match: C6T3J2_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_08G321900 PE=2 SV=1)

HSP 1 Score: 185.3 bits (469), Expect = 3.7e-44
Identity = 88/100 (88.00%), Postives = 94/100 (94.00%), Query Frame = 1

Query: 1   MLPKRMKMGITDNPKKLANLIDLVNLPSTLREFVGQSQVSRLGCFKCVWSYIKTNNLQDP 60
           MLP+RMK  ITDNPKKLANLIDLVNLPSTLREFVGQSQ+SRLGCFKC+WSYIKTNNLQD 
Sbjct: 1   MLPQRMKKAITDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFKCIWSYIKTNNLQDQ 60

Query: 61  TNKNVVICDDKLKSILLGKPKVELAELPALIKLHFPKNPK 101
            NKNVV CD+KLKSILLGKP+VELAELPALIK+HFPK PK
Sbjct: 61  NNKNVVNCDEKLKSILLGKPQVELAELPALIKMHFPKEPK 100

BLAST of Cla011684 vs. TrEMBL
Match: I1N0J4_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_18G090500 PE=4 SV=1)

HSP 1 Score: 183.3 bits (464), Expect = 1.4e-43
Identity = 88/100 (88.00%), Postives = 93/100 (93.00%), Query Frame = 1

Query: 1   MLPKRMKMGITDNPKKLANLIDLVNLPSTLREFVGQSQVSRLGCFKCVWSYIKTNNLQDP 60
           MLP+RMK  ITDNPKKLANLIDLVNLPSTLREFVGQSQ+SRLGCFKCVW YIKTNNLQD 
Sbjct: 1   MLPQRMKKAITDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFKCVWFYIKTNNLQDQ 60

Query: 61  TNKNVVICDDKLKSILLGKPKVELAELPALIKLHFPKNPK 101
            NKNVV CD+KLKSILLGKP+VELAELPALIK+HFPK PK
Sbjct: 61  NNKNVVNCDEKLKSILLGKPQVELAELPALIKMHFPKEPK 100

BLAST of Cla011684 vs. NCBI nr
Match: gi|659096818|ref|XP_008449303.1| (PREDICTED: upstream activation factor subunit spp27 [Cucumis melo])

HSP 1 Score: 193.4 bits (490), Expect = 2.0e-46
Identity = 92/100 (92.00%), Postives = 97/100 (97.00%), Query Frame = 1

Query: 1   MLPKRMKMGITDNPKKLANLIDLVNLPSTLREFVGQSQVSRLGCFKCVWSYIKTNNLQDP 60
           M  +RMKM +TDNPKKLANLIDLVNLPSTLREFVGQSQ+SRLGCFKCVWSYIKTNNLQDP
Sbjct: 1   MTIRRMKMAMTDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFKCVWSYIKTNNLQDP 60

Query: 61  TNKNVVICDDKLKSILLGKPKVELAELPALIKLHFPKNPK 101
           TNKNVV+CD+KLKSILLGKPKVELAELPALIKLHFPKNPK
Sbjct: 61  TNKNVVVCDEKLKSILLGKPKVELAELPALIKLHFPKNPK 100

BLAST of Cla011684 vs. NCBI nr
Match: gi|778694879|ref|XP_011653889.1| (PREDICTED: upstream activation factor subunit spp27 [Cucumis sativus])

HSP 1 Score: 191.8 bits (486), Expect = 5.7e-46
Identity = 93/100 (93.00%), Postives = 95/100 (95.00%), Query Frame = 1

Query: 1   MLPKRMKMGITDNPKKLANLIDLVNLPSTLREFVGQSQVSRLGCFKCVWSYIKTNNLQDP 60
           M  KRMKM ITDNPKKLANLIDLVNLPSTLREFVG SQ+SRLGCFKCVWSYIKTNNLQDP
Sbjct: 1   MATKRMKMAITDNPKKLANLIDLVNLPSTLREFVGHSQISRLGCFKCVWSYIKTNNLQDP 60

Query: 61  TNKNVVICDDKLKSILLGKPKVELAELPALIKLHFPKNPK 101
           TNKNVVICD+KLKSILLGKPKVELAELPALIKLHFPKN K
Sbjct: 61  TNKNVVICDEKLKSILLGKPKVELAELPALIKLHFPKNSK 100

BLAST of Cla011684 vs. NCBI nr
Match: gi|700199619|gb|KGN54777.1| (hypothetical protein Csa_4G493210 [Cucumis sativus])

HSP 1 Score: 191.8 bits (486), Expect = 5.7e-46
Identity = 93/100 (93.00%), Postives = 95/100 (95.00%), Query Frame = 1

Query: 1   MLPKRMKMGITDNPKKLANLIDLVNLPSTLREFVGQSQVSRLGCFKCVWSYIKTNNLQDP 60
           M  KRMKM ITDNPKKLANLIDLVNLPSTLREFVG SQ+SRLGCFKCVWSYIKTNNLQDP
Sbjct: 93  MATKRMKMAITDNPKKLANLIDLVNLPSTLREFVGHSQISRLGCFKCVWSYIKTNNLQDP 152

Query: 61  TNKNVVICDDKLKSILLGKPKVELAELPALIKLHFPKNPK 101
           TNKNVVICD+KLKSILLGKPKVELAELPALIKLHFPKN K
Sbjct: 153 TNKNVVICDEKLKSILLGKPKVELAELPALIKLHFPKNSK 192

BLAST of Cla011684 vs. NCBI nr
Match: gi|1012340959|gb|KYP52168.1| (Upstream activation factor subunit UAF30 [Cajanus cajan])

HSP 1 Score: 187.2 bits (474), Expect = 1.4e-44
Identity = 88/100 (88.00%), Postives = 95/100 (95.00%), Query Frame = 1

Query: 1   MLPKRMKMGITDNPKKLANLIDLVNLPSTLREFVGQSQVSRLGCFKCVWSYIKTNNLQDP 60
           MLP+RMK  ITDNPKKLANLIDL+NLPSTLREFVGQSQ+SRLGCFKCVWSYIKTNNLQDP
Sbjct: 1   MLPQRMKKAITDNPKKLANLIDLINLPSTLREFVGQSQISRLGCFKCVWSYIKTNNLQDP 60

Query: 61  TNKNVVICDDKLKSILLGKPKVELAELPALIKLHFPKNPK 101
            NKNVV CD+KLKSILLGKP+V+LAELPALIK+HFPK PK
Sbjct: 61  NNKNVVNCDEKLKSILLGKPQVDLAELPALIKMHFPKEPK 100

BLAST of Cla011684 vs. NCBI nr
Match: gi|951056859|ref|XP_014521860.1| (PREDICTED: upstream activation factor subunit spp27 [Vigna radiata var. radiata])

HSP 1 Score: 185.7 bits (470), Expect = 4.1e-44
Identity = 87/100 (87.00%), Postives = 94/100 (94.00%), Query Frame = 1

Query: 1   MLPKRMKMGITDNPKKLANLIDLVNLPSTLREFVGQSQVSRLGCFKCVWSYIKTNNLQDP 60
           MLP+RMK  ITDNPKKLANLIDLVNLPSTLREFVGQSQ+SRLGCF CVWSY+K NNLQDP
Sbjct: 1   MLPQRMKKAITDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFMCVWSYVKANNLQDP 60

Query: 61  TNKNVVICDDKLKSILLGKPKVELAELPALIKLHFPKNPK 101
           +NKNV+ CDDKLKSILLGKP+VELAELPALIK+HFPK PK
Sbjct: 61  SNKNVINCDDKLKSILLGKPQVELAELPALIKMHFPKEPK 100

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
UAF30_SCHPO1.4e-0748.08Upstream activation factor subunit spp27 OS=Schizosaccharomyces pombe (strain 97... [more]
UAF30_YEAST2.0e-0632.47Upstream activation factor subunit UAF30 OS=Saccharomyces cerevisiae (strain ATC... [more]
Match NameE-valueIdentityDescription
A0A0A0L2E1_CUCSA4.0e-4693.00Uncharacterized protein OS=Cucumis sativus GN=Csa_4G493210 PE=4 SV=1[more]
A0A151SBL4_CAJCA9.8e-4588.00Upstream activation factor subunit UAF30 OS=Cajanus cajan GN=KK1_025905 PE=4 SV=... [more]
A0A0B2NVJ3_GLYSO3.7e-4488.00Upstream activation factor subunit spp27 OS=Glycine soja GN=glysoja_006364 PE=4 ... [more]
C6T3J2_SOYBN3.7e-4488.00Uncharacterized protein OS=Glycine max GN=GLYMA_08G321900 PE=2 SV=1[more]
I1N0J4_SOYBN1.4e-4388.00Uncharacterized protein OS=Glycine max GN=GLYMA_18G090500 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
gi|659096818|ref|XP_008449303.1|2.0e-4692.00PREDICTED: upstream activation factor subunit spp27 [Cucumis melo][more]
gi|778694879|ref|XP_011653889.1|5.7e-4693.00PREDICTED: upstream activation factor subunit spp27 [Cucumis sativus][more]
gi|700199619|gb|KGN54777.1|5.7e-4693.00hypothetical protein Csa_4G493210 [Cucumis sativus][more]
gi|1012340959|gb|KYP52168.1|1.4e-4488.00Upstream activation factor subunit UAF30 [Cajanus cajan][more]
gi|951056859|ref|XP_014521860.1|4.1e-4487.00PREDICTED: upstream activation factor subunit spp27 [Vigna radiata var. radiata][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR003121SWIB_MDM2_domain
IPR019835SWIB_domain
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
cellular_component GO:0005634 nucleus
molecular_function GO:0005515 protein binding
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
WMU12108watermelon unigene v2 vs TrEMBLtranscribed_cluster
WMU37430watermelon unigene v2 vs TrEMBLtranscribed_cluster
WMU65016watermelon EST collection version 2.0transcribed_cluster

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla011684Cla011684.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
WMU37430WMU37430transcribed_cluster
WMU12108WMU12108transcribed_cluster
WMU65016WMU65016transcribed_cluster


Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003121SWIB/MDM2 domainGENE3DG3DSA:1.10.245.10coord: 15..98
score: 3.0
IPR003121SWIB/MDM2 domainPFAMPF02201SWIBcoord: 24..95
score: 1.2
IPR003121SWIB/MDM2 domainunknownSSF47592SWIB/MDM2 domaincoord: 13..98
score: 1.41
IPR019835SWIB domainSMARTSM00151swib_2coord: 20..100
score: 1.0
NoneNo IPR availablePANTHERPTHR13844BRG-1 ASSOCIATED FACTOR 60 BAF60coord: 4..100
score: 3.7
NoneNo IPR availablePANTHERPTHR13844:SF9SUBFAMILY NOT NAMEDcoord: 4..100
score: 3.7