Cp4.1LG10g12520 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG10g12520
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionSWIb domain-containing protein
LocationCp4.1LG10 : 9605139 .. 9607817 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTCAGATTTTGTTTGGGAGGTTTTGGTTATTGAATGAGCTTATTGCGCCTCAATTTGCAGGACTTTCTGTGATTTCCTTGCTTCTACTTTTTTCATTCTCTGAACTGGCTTTCTTGATTTGAACTCGCTGTACTTCATTTCTCTTGATTTCCCGAGAAATTTCGTGTTCTGTTTCACTCTCTGTGATTGAAAATCTATTGCACATAAGATGTTTGATAAAATTCCCTTGAACCGATGCTCAGATTTTGCTTAGGAGGTTTTGGTTATTGAATGAGCTTATCGCGCCTCAATTTGCAGGACTTTCTGTGTTTTTCATATTTCCAAAGCTTCGTTTCATCTTCCGAGTAAACAGTTTTTATGTGTTTTTCCAGTGGAGGTGGAAGCGAACTAGTTGTGCAGAAAAAATGCTGCCGCAACGGATGAAGACGGCCATTACAGATAACCCGAAGAAGCTTGCTAGCTTGATTGATCTCGTAAACCTTCCTTCAACTCTCAGGGAGTTTGTGGGACAGTCCCAAATTTCTCGTCTCGGCTGTTTCAAGTATGTGTGGTCATATATCAAAACCAATAATCTTCAGGTTCTATTCTTTGTCTCCAATTATGGCCTTTTTTTTATATATATAGTTTTCGATGCATATTGTTTATACTGCTATCAACCTATAACAGAGAGTTCCCTTGTTAAATCTACTTTCAAAATAGTTTTCATAGATTCTATATTGTATTCTGGTTGAAGTATGGCGTAAAATGGGCACGAGGGTAAGGAACGAAAGGAAAAGAGTAATCAAAGAGGAGAAGAAAGGTCATGAATCTGAATAATCAGGATGATAAAGAATATCTTGAAATGGAAGTTATGACAACCTGATGGAGGGTCAAGGTCCTTGGAACGTCCCTAGATTTGAATAATCAAATACATGACGGTCCTTGGAACGTAGATTATGAGAACCTGATGTACATGACATAATCTAGGTTCTCAAGTATACGTGACAGTCCTTGGTCCTTGGAACGTCCCTAGATTTGAATAATCAAATATGTGACAGTCCTTGGAACGTCACTTCATGTATACTTTGAAACTAGATTATGAGAACCTGATGTACATGACATAATCTAGGTTCTTAAGTATACGTGACAGTCCTTGGTCCTTGGAACGCCACGTATACTTTGAAACTGTATAGAAGAGCTACAAGATACTCAAGTATTCGAGGTACTTGGAACGTTCCTAGATTTGAATATACACACTCGAGCCTAAACCATCTGAACAGTTCTCTACCTTCATCGTTTACCACTCACTGGATTTGTAACAAATCCCCCCAACAATTCACCCAAATAATATTAACTACTCCGGTGGGATTCTTATCAAAGAAGAGATCCCAAATGAATTGGCTTCTTCAAAAAAAAAAAAAACCTTGTTCGTTGGAAGTTCTATCTTGTGCTTGGTACTGTACGGTTCCACTCTAGAAGAACTCCGAATCATTCTCTTGAAGCTCTTCCTCTTAAAAGCCCCAGGGGACCATATTCTAGGAGCTCAAACTATGTGATTGAATAAATCCTCCTTTATCTGTTGCAGGTCGAGGACTCCTCCTCCCCCTTCTTCAAACTCCGATTCATATTGTTCAACCACAGGGTCACAGAAGAAATGTGATCTTGATTTATTACCCCAGGGAAGACTTAACTACTAGGTCATAGGCAACATAGAGGAGCTCATAACCCACCAAACCCATCTTTCAAGCTTTACTGACTCAATGCTAATACCAACTAACAAAAATTTCGTCTTATTTTACCTATCAAATTCTATTAAGGCCCACAAAGGACTCCTCCTTAAGCATAAGGAAATAGTATTATAAACTGTAAATGAGTAAGATGGATGATTTTTGTCTCTCCCAACAAACAACCCTTCTGCTAAACCTTTATCCATGCCTCTCAAAATAAGTCCGTTAAGCACATCCACTACCACCCCAAAAGAGAATGATGCTTGATTTTACTTGTAAACTCAATAACTTTTAGTTGATCATGAGTTACAAGTAAGGAATACATCTCCATTGGTACGAGGCCTTTTGGGGGAAACCAAAAGCAAAGCGACGAGAGCTTATGCTCAAAGTGGACAATATCATACCATTGTGAAGAGTCATGGTTCATAACATTTGCATTACACGTTATTATTGTTCTATGGTCATGTATTATGATTTTGGGAAGCTAGAAGTACTTGAAACTTGAATGAAGTAGCACTTCTTTTTCTAAATGTTAAAAATATGTTTCTGGGTATGTACCTTTGTCCAGGATCCAACCAACAAGAATGTGGTCATTTGTGATGAGAAGTTAAAGAGTATATTGCTAGGCAAGTCCAAGATTGAGCTAGCCGAACTTCCCGCGCTGATTAAATTACATTTTCCCAAGAACCCCAAGTGAGTTATGCTTCCAGTTTAACCTCTGCCACATCCAGAATGACCTCTTCAATGTTTAGCCTCAATTTTGTATGAATCTCCTTCTAGGTTTCTTTTATATATAAGATCATAAATTTATTTGACTCTTCTTGTACCTCATGCCTTATGCTTTGTTACTCGTTTTATTTTATCAAGTTGTAACAACTCAAGTCCACTGCTAACAAATATTGTCCTCTTTGGATTTTCCCTTCTGAGCGTCCCTTCAAAGTTTTAAAACGCGTCTACTAGGAAGAGGTTT

mRNA sequence

ATGCTCAGATTTTGTTTGGGAGGACTTTCTGTGTTTTTCATATTTCCAAAGCTTCGTTTCATCTTCCGAGTAAACAGTTTTTATGTGTTTTTCCAGTGGAGGTGGAAGCGAACTAGTTGTGCAGAAAAAATGCTGCCGCAACGGATGAAGACGGCCATTACAGATAACCCGAAGAAGCTTGCTAGCTTGATTGATCTCGTAAACCTTCCTTCAACTCTCAGGGAGTTTGTGGGACAGTCCCAAATTTCTCGTCTCGGCTGTTTCAAGTATGTGTGGTCATATATCAAAACCAATAATCTTCAGGATCCAACCAACAAGAATGTGGTCATTTGTGATGAGAAGTTAAAGAGTATATTGCTAGGCAAGTCCAAGATTGAGCTAGCCGAACTTCCCGCGCTGATTAAATTACATTTTCCCAAGAACCCCAAGTGAGTTATGCTTCCAGTTTAACCTCTGCCACATCCAGAATGACCTCTTCAATGTTTAGCCTCAATTTTGTATGAATCTCCTTCTAGGTTTCTTTTATATATAAGATCATAAATTTATTTGACTCTTCTTGTACCTCATGCCTTATGCTTTGTTACTCGTTTTATTTTATCAAGTTGTAACAACTCAAGTCCACTGCTAACAAATATTGTCCTCTTTGGATTTTCCCTTCTGAGCGTCCCTTCAAAGTTTTAAAACGCGTCTACTAGGAAGAGGTTT

Coding sequence (CDS)

ATGCTCAGATTTTGTTTGGGAGGACTTTCTGTGTTTTTCATATTTCCAAAGCTTCGTTTCATCTTCCGAGTAAACAGTTTTTATGTGTTTTTCCAGTGGAGGTGGAAGCGAACTAGTTGTGCAGAAAAAATGCTGCCGCAACGGATGAAGACGGCCATTACAGATAACCCGAAGAAGCTTGCTAGCTTGATTGATCTCGTAAACCTTCCTTCAACTCTCAGGGAGTTTGTGGGACAGTCCCAAATTTCTCGTCTCGGCTGTTTCAAGTATGTGTGGTCATATATCAAAACCAATAATCTTCAGGATCCAACCAACAAGAATGTGGTCATTTGTGATGAGAAGTTAAAGAGTATATTGCTAGGCAAGTCCAAGATTGAGCTAGCCGAACTTCCCGCGCTGATTAAATTACATTTTCCCAAGAACCCCAAGTGA

Protein sequence

MLRFCLGGLSVFFIFPKLRFIFRVNSFYVFFQWRWKRTSCAEKMLPQRMKTAITDNPKKLASLIDLVNLPSTLREFVGQSQISRLGCFKYVWSYIKTNNLQDPTNKNVVICDEKLKSILLGKSKIELAELPALIKLHFPKNPK
Homology
[Close]
BLAST of Cp4.1LG10g12520 vs. Swiss-Prot
Match: UAF30_SCHPO (Upstream activation factor subunit spp27 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=spp27 PE=1 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 1.5e-07
Identity = 24/52 (46.15%), Postives = 35/52 (67.31%), Query Frame = 1 

Query: 67  VNLPSTLREFVGQSQISRLGCFKYVWSYIKTNNLQDPTNKNVVICDEKLKSI 119
           + L   L EF+G  Q+SR    K +W YIK ++LQDP +K  ++CD+KLKS+
Sbjct: 121 MKLSPKLAEFLGLEQLSRPQTVKKLWEYIKAHDLQDPNDKRTILCDDKLKSV 172

[Close]
BLAST of Cp4.1LG10g12520 vs. Swiss-Prot
Match: UAF30_YEAST (Upstream activation factor subunit UAF30 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=UAF30 PE=1 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 2.6e-07
Identity = 27/77 (35.06%), Postives = 48/77 (62.34%), Query Frame = 1 

Query: 67  VNLPSTLREFVGQSQISRLGCFKYVWSYIKTNNLQDPTNKNVVICDEKLKSILLGKSKIE 126
           V L  +L   +G+ +++R    + +W+YIK +NLQ+P NK  ++CDEKL+ ++LGKS   
Sbjct: 124 VTLSKSLASLLGEHELTRTEVVRRLWAYIKAHNLQNPNNKKEILCDEKLE-LILGKS-TN 183

Query: 127 LAELPALIKLHFPKNPK 144
           + E+  ++  H  +  K
Sbjct: 184 MFEMHKILASHMTEPKK 198

[Close]
BLAST of Cp4.1LG10g12520 vs. Swiss-Prot
Match: TRI1_YEAST (Protein TRI1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TRI1 PE=1 SV=1)

HSP 1 Score: 52.0 bits (123), Expect = 6.3e-06
Identity = 27/90 (30.00%), Postives = 51/90 (56.67%), Query Frame = 1 

Query: 48  RMKTAITDNPKKLASLIDLVNLPSTLREFVGQSQISRLGCFKYVWSYIKTNNLQDPTNKN 107
           + K    D+P   +  +  V L + L++F+G  ++ R    K +W YIK ++LQ+P ++ 
Sbjct: 105 KRKKKKNDSPDSNSISVRKVLLSAPLQKFLGSEELPRTQVVKMIWQYIKEHDLQNPKDRR 164

Query: 108 VVICDEKLKSILLGKSKIELAELPALIKLH 138
            ++CDEK++ I  GK K+ +  +  L+  H
Sbjct: 165 EILCDEKMEPI-FGK-KMTMFSMNKLLTKH 192

[Close]
BLAST of Cp4.1LG10g12520 vs. TrEMBL
Match: A0A0A0L2E1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G493210 PE=4 SV=1)

HSP 1 Score: 183.3 bits (464), Expect = 2.0e-43
Identity = 91/101 (90.10%), Postives = 94/101 (93.07%), Query Frame = 1 

Query: 43  KMLPQRMKTAITDNPKKLASLIDLVNLPSTLREFVGQSQISRLGCFKYVWSYIKTNNLQD 102
           KM  +RMK AITDNPKKLA+LIDLVNLPSTLREFVG SQISRLGCFK VWSYIKTNNLQD
Sbjct: 92  KMATKRMKMAITDNPKKLANLIDLVNLPSTLREFVGHSQISRLGCFKCVWSYIKTNNLQD 151

Query: 103 PTNKNVVICDEKLKSILLGKSKIELAELPALIKLHFPKNPK 144
           PTNKNVVICDEKLKSILLGK K+ELAELPALIKLHFPKN K
Sbjct: 152 PTNKNVVICDEKLKSILLGKPKVELAELPALIKLHFPKNSK 192

[Close]
BLAST of Cp4.1LG10g12520 vs. TrEMBL
Match: A0A151SBL4_CAJCA (Upstream activation factor subunit UAF30 OS=Cajanus cajan GN=KK1_025905 PE=4 SV=1)

HSP 1 Score: 182.2 bits (461), Expect = 4.5e-43
Identity = 88/100 (88.00%), Postives = 94/100 (94.00%), Query Frame = 1 

Query: 44  MLPQRMKTAITDNPKKLASLIDLVNLPSTLREFVGQSQISRLGCFKYVWSYIKTNNLQDP 103
           MLPQRMK AITDNPKKLA+LIDL+NLPSTLREFVGQSQISRLGCFK VWSYIKTNNLQDP
Sbjct: 1   MLPQRMKKAITDNPKKLANLIDLINLPSTLREFVGQSQISRLGCFKCVWSYIKTNNLQDP 60

Query: 104 TNKNVVICDEKLKSILLGKSKIELAELPALIKLHFPKNPK 144
            NKNVV CDEKLKSILLGK +++LAELPALIK+HFPK PK
Sbjct: 61  NNKNVVNCDEKLKSILLGKPQVDLAELPALIKMHFPKEPK 100

[Close]
BLAST of Cp4.1LG10g12520 vs. TrEMBL
Match: C6T3J2_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_08G321900 PE=2 SV=1)

HSP 1 Score: 180.3 bits (456), Expect = 1.7e-42
Identity = 88/100 (88.00%), Postives = 93/100 (93.00%), Query Frame = 1 

Query: 44  MLPQRMKTAITDNPKKLASLIDLVNLPSTLREFVGQSQISRLGCFKYVWSYIKTNNLQDP 103
           MLPQRMK AITDNPKKLA+LIDLVNLPSTLREFVGQSQISRLGCFK +WSYIKTNNLQD 
Sbjct: 1   MLPQRMKKAITDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFKCIWSYIKTNNLQDQ 60

Query: 104 TNKNVVICDEKLKSILLGKSKIELAELPALIKLHFPKNPK 144
            NKNVV CDEKLKSILLGK ++ELAELPALIK+HFPK PK
Sbjct: 61  NNKNVVNCDEKLKSILLGKPQVELAELPALIKMHFPKEPK 100

[Close]
BLAST of Cp4.1LG10g12520 vs. TrEMBL
Match: A0A0B2NVJ3_GLYSO (Upstream activation factor subunit spp27 OS=Glycine soja GN=glysoja_006364 PE=4 SV=1)

HSP 1 Score: 180.3 bits (456), Expect = 1.7e-42
Identity = 88/100 (88.00%), Postives = 93/100 (93.00%), Query Frame = 1 

Query: 44  MLPQRMKTAITDNPKKLASLIDLVNLPSTLREFVGQSQISRLGCFKYVWSYIKTNNLQDP 103
           MLPQRMK AITDNPKKLA+LIDLVNLPSTLREFVGQSQISRLGCFK +WSYIKTNNLQD 
Sbjct: 1   MLPQRMKKAITDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFKCIWSYIKTNNLQDQ 60

Query: 104 TNKNVVICDEKLKSILLGKSKIELAELPALIKLHFPKNPK 144
            NKNVV CDEKLKSILLGK ++ELAELPALIK+HFPK PK
Sbjct: 61  NNKNVVNCDEKLKSILLGKPQVELAELPALIKMHFPKEPK 100

[Close]
BLAST of Cp4.1LG10g12520 vs. TrEMBL
Match: I1N0J4_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_18G090500 PE=4 SV=1)

HSP 1 Score: 178.3 bits (451), Expect = 6.5e-42
Identity = 88/100 (88.00%), Postives = 92/100 (92.00%), Query Frame = 1 

Query: 44  MLPQRMKTAITDNPKKLASLIDLVNLPSTLREFVGQSQISRLGCFKYVWSYIKTNNLQDP 103
           MLPQRMK AITDNPKKLA+LIDLVNLPSTLREFVGQSQISRLGCFK VW YIKTNNLQD 
Sbjct: 1   MLPQRMKKAITDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFKCVWFYIKTNNLQDQ 60

Query: 104 TNKNVVICDEKLKSILLGKSKIELAELPALIKLHFPKNPK 144
            NKNVV CDEKLKSILLGK ++ELAELPALIK+HFPK PK
Sbjct: 61  NNKNVVNCDEKLKSILLGKPQVELAELPALIKMHFPKEPK 100

[Close]
BLAST of Cp4.1LG10g12520 vs. TAIR10
Match: AT4G26810.1 (AT4G26810.1 SWIB/MDM2 domain superfamily protein)

HSP 1 Score: 173.7 bits (439), Expect = 8.1e-44
Identity = 84/100 (84.00%), Postives = 90/100 (90.00%), Query Frame = 1 

Query: 44  MLPQRMKTAITDNPKKLASLIDLVNLPSTLREFVGQSQISRLGCFKYVWSYIKTNNLQDP 103
           MLPQR+K AITDNPKKL +LIDLVNLPSTLR FVGQSQISRLGCF  VWSYIKTNNLQDP
Sbjct: 1   MLPQRLKKAITDNPKKLGNLIDLVNLPSTLRNFVGQSQISRLGCFMRVWSYIKTNNLQDP 60

Query: 104 TNKNVVICDEKLKSILLGKSKIELAELPALIKLHFPKNPK 144
            NKNVVICDEKLKSILLGK ++EL +LP+LIKLHFPK  K
Sbjct: 61  KNKNVVICDEKLKSILLGKQRVELVDLPSLIKLHFPKEQK 100

[Close]
BLAST of Cp4.1LG10g12520 vs. TAIR10
Match: AT2G35605.1 (AT2G35605.1 SWIB/MDM2 domain superfamily protein)

HSP 1 Score: 78.2 bits (191), Expect = 4.6e-15
Identity = 32/79 (40.51%), Postives = 51/79 (64.56%), Query Frame = 1 

Query: 63  LIDLVNLPSTLREFVGQSQISRLGCFKYVWSYIKTNNLQDPTNKNVVICDEKLKSILLGK 122
           ++ +V +   L  F+G++++SR    K +W YIK NNLQ+P NK  ++CDE+LK+I  GK
Sbjct: 30  ILKVVPVSKPLANFIGENEVSRTTAVKKIWEYIKLNNLQNPVNKREILCDEQLKTIFSGK 89

Query: 123 SKIELAELPALIKLHFPKN 142
             +   E+  L+  HFPK+
Sbjct: 90  DTVGFLEISKLLSQHFPKS 108

[Close]
BLAST of Cp4.1LG10g12520 vs. TAIR10
Match: AT1G31760.1 (AT1G31760.1 SWIB/MDM2 domain superfamily protein)

HSP 1 Score: 71.2 bits (173), Expect = 5.7e-13
Identity = 30/69 (43.48%), Postives = 45/69 (65.22%), Query Frame = 1 

Query: 73  LREFVGQSQISRLGCFKYVWSYIKTNNLQDPTNKNVVICDEKLKSILLGKSKIELAELPA 132
           L  F G+ +++R    K VW Y+K +NLQ+P NK  + CD+KLK+I  GK K+ + E+  
Sbjct: 43  LASFAGERELTRGSALKKVWEYVKLHNLQNPANKKEIHCDDKLKTIFDGKDKVGITEIMK 102

Query: 133 LIKLHFPKN 142
           L+  HFPK+
Sbjct: 103 LLSPHFPKS 111

[Close]
BLAST of Cp4.1LG10g12520 vs. TAIR10
Match: AT4G34290.1 (AT4G34290.1 SWIB/MDM2 domain superfamily protein)

HSP 1 Score: 65.5 bits (158), Expect = 3.1e-11
Identity = 29/66 (43.94%), Postives = 42/66 (63.64%), Query Frame = 1 

Query: 73  LREFVGQSQISRLGCFKYVWSYIKTNNLQDPTNKNVVICDEKLKSILLGKSKIELAELPA 132
           +++ VG  +I R    K +W+YIK ++LQDP NK  ++CDEKLK I  GK ++   E+  
Sbjct: 78  MQDVVGVPEIPRTQALKRIWAYIKEHDLQDPQNKRDILCDEKLKKIFEGKERVGFLEIAK 137

Query: 133 LIKLHF 139
           LI  HF
Sbjct: 138 LIGPHF 143

[Close]
BLAST of Cp4.1LG10g12520 vs. TAIR10
Match: AT3G03590.1 (AT3G03590.1 SWIB/MDM2 domain superfamily protein)

HSP 1 Score: 65.5 bits (158), Expect = 3.1e-11
Identity = 34/109 (31.19%), Postives = 56/109 (51.38%), Query Frame = 1 

Query: 36  KRTSCAEKMLPQRMKTAITDNPKKLA----SLIDLVNLPSTLREFVGQSQISRLGCFKYV 95
           K+ +   K   +    A +D+P K       +  +  +   L +F+G  + SR    K +
Sbjct: 33  KKPAAKPKAKAKPKPKAKSDSPAKKTPRSTGIFKVTPVSPVLAQFLGTGETSRTDAIKGI 92

Query: 96  WSYIKTNNLQDPTNKNVVICDEKLKSILLGKSKIELAELPALIKLHFPK 141
           W+YIK+++LQ+P +K  + CDE LK I  GK K+   E+  L+  HF K
Sbjct: 93  WTYIKSHDLQNPADKREIFCDETLKLIFEGKDKVGFLEISKLLSPHFVK 141

[Close]
BLAST of Cp4.1LG10g12520 vs. NCBI nr
Match: gi|659096818|ref|XP_008449303.1| (PREDICTED: upstream activation factor subunit spp27 [Cucumis melo])

HSP 1 Score: 184.1 bits (466), Expect = 1.7e-43
Identity = 90/100 (90.00%), Postives = 95/100 (95.00%), Query Frame = 1 

Query: 44  MLPQRMKTAITDNPKKLASLIDLVNLPSTLREFVGQSQISRLGCFKYVWSYIKTNNLQDP 103
           M  +RMK A+TDNPKKLA+LIDLVNLPSTLREFVGQSQISRLGCFK VWSYIKTNNLQDP
Sbjct: 1   MTIRRMKMAMTDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFKCVWSYIKTNNLQDP 60

Query: 104 TNKNVVICDEKLKSILLGKSKIELAELPALIKLHFPKNPK 144
           TNKNVV+CDEKLKSILLGK K+ELAELPALIKLHFPKNPK
Sbjct: 61  TNKNVVVCDEKLKSILLGKPKVELAELPALIKLHFPKNPK 100

[Close]
BLAST of Cp4.1LG10g12520 vs. NCBI nr
Match: gi|700199619|gb|KGN54777.1| (hypothetical protein Csa_4G493210 [Cucumis sativus])

HSP 1 Score: 183.3 bits (464), Expect = 2.9e-43
Identity = 91/101 (90.10%), Postives = 94/101 (93.07%), Query Frame = 1 

Query: 43  KMLPQRMKTAITDNPKKLASLIDLVNLPSTLREFVGQSQISRLGCFKYVWSYIKTNNLQD 102
           KM  +RMK AITDNPKKLA+LIDLVNLPSTLREFVG SQISRLGCFK VWSYIKTNNLQD
Sbjct: 92  KMATKRMKMAITDNPKKLANLIDLVNLPSTLREFVGHSQISRLGCFKCVWSYIKTNNLQD 151

Query: 103 PTNKNVVICDEKLKSILLGKSKIELAELPALIKLHFPKNPK 144
           PTNKNVVICDEKLKSILLGK K+ELAELPALIKLHFPKN K
Sbjct: 152 PTNKNVVICDEKLKSILLGKPKVELAELPALIKLHFPKNSK 192

[Close]
BLAST of Cp4.1LG10g12520 vs. NCBI nr
Match: gi|1012340959|gb|KYP52168.1| (Upstream activation factor subunit UAF30 [Cajanus cajan])

HSP 1 Score: 182.2 bits (461), Expect = 6.5e-43
Identity = 88/100 (88.00%), Postives = 94/100 (94.00%), Query Frame = 1 

Query: 44  MLPQRMKTAITDNPKKLASLIDLVNLPSTLREFVGQSQISRLGCFKYVWSYIKTNNLQDP 103
           MLPQRMK AITDNPKKLA+LIDL+NLPSTLREFVGQSQISRLGCFK VWSYIKTNNLQDP
Sbjct: 1   MLPQRMKKAITDNPKKLANLIDLINLPSTLREFVGQSQISRLGCFKCVWSYIKTNNLQDP 60

Query: 104 TNKNVVICDEKLKSILLGKSKIELAELPALIKLHFPKNPK 144
            NKNVV CDEKLKSILLGK +++LAELPALIK+HFPK PK
Sbjct: 61  NNKNVVNCDEKLKSILLGKPQVDLAELPALIKMHFPKEPK 100

[Close]
BLAST of Cp4.1LG10g12520 vs. NCBI nr
Match: gi|778694879|ref|XP_011653889.1| (PREDICTED: upstream activation factor subunit spp27 [Cucumis sativus])

HSP 1 Score: 181.4 bits (459), Expect = 1.1e-42
Identity = 90/100 (90.00%), Postives = 93/100 (93.00%), Query Frame = 1 

Query: 44  MLPQRMKTAITDNPKKLASLIDLVNLPSTLREFVGQSQISRLGCFKYVWSYIKTNNLQDP 103
           M  +RMK AITDNPKKLA+LIDLVNLPSTLREFVG SQISRLGCFK VWSYIKTNNLQDP
Sbjct: 1   MATKRMKMAITDNPKKLANLIDLVNLPSTLREFVGHSQISRLGCFKCVWSYIKTNNLQDP 60

Query: 104 TNKNVVICDEKLKSILLGKSKIELAELPALIKLHFPKNPK 144
           TNKNVVICDEKLKSILLGK K+ELAELPALIKLHFPKN K
Sbjct: 61  TNKNVVICDEKLKSILLGKPKVELAELPALIKLHFPKNSK 100

[Close]
BLAST of Cp4.1LG10g12520 vs. NCBI nr
Match: gi|351724909|ref|NP_001236050.1| (uncharacterized protein LOC100527179 [Glycine max])

HSP 1 Score: 180.3 bits (456), Expect = 2.5e-42
Identity = 88/100 (88.00%), Postives = 93/100 (93.00%), Query Frame = 1 

Query: 44  MLPQRMKTAITDNPKKLASLIDLVNLPSTLREFVGQSQISRLGCFKYVWSYIKTNNLQDP 103
           MLPQRMK AITDNPKKLA+LIDLVNLPSTLREFVGQSQISRLGCFK +WSYIKTNNLQD 
Sbjct: 1   MLPQRMKKAITDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFKCIWSYIKTNNLQDQ 60

Query: 104 TNKNVVICDEKLKSILLGKSKIELAELPALIKLHFPKNPK 144
            NKNVV CDEKLKSILLGK ++ELAELPALIK+HFPK PK
Sbjct: 61  NNKNVVNCDEKLKSILLGKPQVELAELPALIKMHFPKEPK 100

The following BLAST results are available for this feature:
BLAST of Cp4.1LG10g12520 vs. Swiss-Prot
Match NameE-valueIdentityDescription
UAF30_SCHPO1.5e-0746.15Upstream activation factor subunit spp27 OS=Schizosaccharomyces pombe (strain 97... [more]
UAF30_YEAST2.6e-0735.06Upstream activation factor subunit UAF30 OS=Saccharomyces cerevisiae (strain ATC... [more]
TRI1_YEAST6.3e-0630.00Protein TRI1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TRI1 PE... [more]
BLAST of Cp4.1LG10g12520 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L2E1_CUCSA2.0e-4390.10Uncharacterized protein OS=Cucumis sativus GN=Csa_4G493210 PE=4 SV=1[more]
A0A151SBL4_CAJCA4.5e-4388.00Upstream activation factor subunit UAF30 OS=Cajanus cajan GN=KK1_025905 PE=4 SV=... [more]
C6T3J2_SOYBN1.7e-4288.00Uncharacterized protein OS=Glycine max GN=GLYMA_08G321900 PE=2 SV=1[more]
A0A0B2NVJ3_GLYSO1.7e-4288.00Upstream activation factor subunit spp27 OS=Glycine soja GN=glysoja_006364 PE=4 ... [more]
I1N0J4_SOYBN6.5e-4288.00Uncharacterized protein OS=Glycine max GN=GLYMA_18G090500 PE=4 SV=1[more]
BLAST of Cp4.1LG10g12520 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G26810.18.1e-4484.00 SWIB/MDM2 domain superfamily protein[more]
AT2G35605.14.6e-1540.51 SWIB/MDM2 domain superfamily protein[more]
AT1G31760.15.7e-1343.48 SWIB/MDM2 domain superfamily protein[more]
AT4G34290.13.1e-1143.94 SWIB/MDM2 domain superfamily protein[more]
AT3G03590.13.1e-1131.19 SWIB/MDM2 domain superfamily protein[more]
BLAST of Cp4.1LG10g12520 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659096818|ref|XP_008449303.1|1.7e-4390.00PREDICTED: upstream activation factor subunit spp27 [Cucumis melo][more]
gi|700199619|gb|KGN54777.1|2.9e-4390.10hypothetical protein Csa_4G493210 [Cucumis sativus][more]
gi|1012340959|gb|KYP52168.1|6.5e-4388.00Upstream activation factor subunit UAF30 [Cajanus cajan][more]
gi|778694879|ref|XP_011653889.1|1.1e-4290.00PREDICTED: upstream activation factor subunit spp27 [Cucumis sativus][more]
gi|351724909|ref|NP_001236050.1|2.5e-4288.00uncharacterized protein LOC100527179 [Glycine max][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR019835SWIB_domain
IPR003121SWIB_MDM2_domain
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0005515 protein binding
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG10g12520.1Cp4.1LG10g12520.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003121SWIB/MDM2 domainGENE3DG3DSA:1.10.245.10coord: 59..141
score: 8.5
IPR003121SWIB/MDM2 domainPFAMPF02201SWIBcoord: 67..138
score: 1.4
IPR003121SWIB/MDM2 domainunknownSSF47592SWIB/MDM2 domaincoord: 56..141
score: 3.11
IPR019835SWIB domainSMARTSM00151swib_2coord: 63..143
score: 2.3
NoneNo IPR availablePANTHERPTHR13844BRG-1 ASSOCIATED FACTOR 60 BAF60coord: 47..143
score: 2.0
NoneNo IPR availablePANTHERPTHR13844:SF9SUBFAMILY NOT NAMEDcoord: 47..143
score: 2.0

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG10g12520CmaCh03G000230Cucurbita maxima (Rimu)cmacpeB654
Cp4.1LG10g12520CmoCh03G000240Cucurbita moschata (Rifu)cmocpeB604
Cp4.1LG10g12520Cla011684Watermelon (97103) v1cpewmB083
Cp4.1LG10g12520Csa4G493210Cucumber (Chinese Long) v2cpecuB073
Cp4.1LG10g12520ClCG04G002280Watermelon (Charleston Gray)cpewcgB077
Cp4.1LG10g12520CSPI04G19900Wild cucumber (PI 183967)cpecpiB067
Cp4.1LG10g12520Lsi01G020710Bottle gourd (USVL1VR-Ls)cpelsiB050
Cp4.1LG10g12520Bhi03G002325Wax gourdcpewgoB0090
Cp4.1LG10g12520Carg26093Silver-seed gourdcarcpeB0729
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG10g12520Cucumber (Chinese Long) v3cpecucB0077
Cp4.1LG10g12520Cucurbita pepo (Zucchini)cpecpeB082
Cp4.1LG10g12520Wild cucumber (PI 183967)cpecpiB075
Cp4.1LG10g12520Cucumber (Chinese Long) v2cpecuB082
Cp4.1LG10g12520Watermelon (Charleston Gray)cpewcgB080
Cp4.1LG10g12520Watermelon (97103) v1cpewmB089
Cp4.1LG10g12520Melon (DHL92) v3.5.1cpemeB074
Cp4.1LG10g12520Cucumber (Gy14) v2cgybcpeB465
Cp4.1LG10g12520Melon (DHL92) v3.6.1cpemedB096
Cp4.1LG10g12520Silver-seed gourdcarcpeB0665