Cp4.1LG10g12520 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG10g12520
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionSWIb domain-containing protein
LocationCp4.1LG10 : 9605139 .. 9607817 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTCAGATTTTGTTTGGGAGGTTTTGGTTATTGAATGAGCTTATTGCGCCTCAATTTGCAGGACTTTCTGTGATTTCCTTGCTTCTACTTTTTTCATTCTCTGAACTGGCTTTCTTGATTTGAACTCGCTGTACTTCATTTCTCTTGATTTCCCGAGAAATTTCGTGTTCTGTTTCACTCTCTGTGATTGAAAATCTATTGCACATAAGATGTTTGATAAAATTCCCTTGAACCGATGCTCAGATTTTGCTTAGGAGGTTTTGGTTATTGAATGAGCTTATCGCGCCTCAATTTGCAGGACTTTCTGTGTTTTTCATATTTCCAAAGCTTCGTTTCATCTTCCGAGTAAACAGTTTTTATGTGTTTTTCCAGTGGAGGTGGAAGCGAACTAGTTGTGCAGAAAAAATGCTGCCGCAACGGATGAAGACGGCCATTACAGATAACCCGAAGAAGCTTGCTAGCTTGATTGATCTCGTAAACCTTCCTTCAACTCTCAGGGAGTTTGTGGGACAGTCCCAAATTTCTCGTCTCGGCTGTTTCAAGTATGTGTGGTCATATATCAAAACCAATAATCTTCAGGTTCTATTCTTTGTCTCCAATTATGGCCTTTTTTTTATATATATAGTTTTCGATGCATATTGTTTATACTGCTATCAACCTATAACAGAGAGTTCCCTTGTTAAATCTACTTTCAAAATAGTTTTCATAGATTCTATATTGTATTCTGGTTGAAGTATGGCGTAAAATGGGCACGAGGGTAAGGAACGAAAGGAAAAGAGTAATCAAAGAGGAGAAGAAAGGTCATGAATCTGAATAATCAGGATGATAAAGAATATCTTGAAATGGAAGTTATGACAACCTGATGGAGGGTCAAGGTCCTTGGAACGTCCCTAGATTTGAATAATCAAATACATGACGGTCCTTGGAACGTAGATTATGAGAACCTGATGTACATGACATAATCTAGGTTCTCAAGTATACGTGACAGTCCTTGGTCCTTGGAACGTCCCTAGATTTGAATAATCAAATATGTGACAGTCCTTGGAACGTCACTTCATGTATACTTTGAAACTAGATTATGAGAACCTGATGTACATGACATAATCTAGGTTCTTAAGTATACGTGACAGTCCTTGGTCCTTGGAACGCCACGTATACTTTGAAACTGTATAGAAGAGCTACAAGATACTCAAGTATTCGAGGTACTTGGAACGTTCCTAGATTTGAATATACACACTCGAGCCTAAACCATCTGAACAGTTCTCTACCTTCATCGTTTACCACTCACTGGATTTGTAACAAATCCCCCCAACAATTCACCCAAATAATATTAACTACTCCGGTGGGATTCTTATCAAAGAAGAGATCCCAAATGAATTGGCTTCTTCAAAAAAAAAAAAAACCTTGTTCGTTGGAAGTTCTATCTTGTGCTTGGTACTGTACGGTTCCACTCTAGAAGAACTCCGAATCATTCTCTTGAAGCTCTTCCTCTTAAAAGCCCCAGGGGACCATATTCTAGGAGCTCAAACTATGTGATTGAATAAATCCTCCTTTATCTGTTGCAGGTCGAGGACTCCTCCTCCCCCTTCTTCAAACTCCGATTCATATTGTTCAACCACAGGGTCACAGAAGAAATGTGATCTTGATTTATTACCCCAGGGAAGACTTAACTACTAGGTCATAGGCAACATAGAGGAGCTCATAACCCACCAAACCCATCTTTCAAGCTTTACTGACTCAATGCTAATACCAACTAACAAAAATTTCGTCTTATTTTACCTATCAAATTCTATTAAGGCCCACAAAGGACTCCTCCTTAAGCATAAGGAAATAGTATTATAAACTGTAAATGAGTAAGATGGATGATTTTTGTCTCTCCCAACAAACAACCCTTCTGCTAAACCTTTATCCATGCCTCTCAAAATAAGTCCGTTAAGCACATCCACTACCACCCCAAAAGAGAATGATGCTTGATTTTACTTGTAAACTCAATAACTTTTAGTTGATCATGAGTTACAAGTAAGGAATACATCTCCATTGGTACGAGGCCTTTTGGGGGAAACCAAAAGCAAAGCGACGAGAGCTTATGCTCAAAGTGGACAATATCATACCATTGTGAAGAGTCATGGTTCATAACATTTGCATTACACGTTATTATTGTTCTATGGTCATGTATTATGATTTTGGGAAGCTAGAAGTACTTGAAACTTGAATGAAGTAGCACTTCTTTTTCTAAATGTTAAAAATATGTTTCTGGGTATGTACCTTTGTCCAGGATCCAACCAACAAGAATGTGGTCATTTGTGATGAGAAGTTAAAGAGTATATTGCTAGGCAAGTCCAAGATTGAGCTAGCCGAACTTCCCGCGCTGATTAAATTACATTTTCCCAAGAACCCCAAGTGAGTTATGCTTCCAGTTTAACCTCTGCCACATCCAGAATGACCTCTTCAATGTTTAGCCTCAATTTTGTATGAATCTCCTTCTAGGTTTCTTTTATATATAAGATCATAAATTTATTTGACTCTTCTTGTACCTCATGCCTTATGCTTTGTTACTCGTTTTATTTTATCAAGTTGTAACAACTCAAGTCCACTGCTAACAAATATTGTCCTCTTTGGATTTTCCCTTCTGAGCGTCCCTTCAAAGTTTTAAAACGCGTCTACTAGGAAGAGGTTT

mRNA sequence

ATGCTCAGATTTTGTTTGGGAGGACTTTCTGTGTTTTTCATATTTCCAAAGCTTCGTTTCATCTTCCGAGTAAACAGTTTTTATGTGTTTTTCCAGTGGAGGTGGAAGCGAACTAGTTGTGCAGAAAAAATGCTGCCGCAACGGATGAAGACGGCCATTACAGATAACCCGAAGAAGCTTGCTAGCTTGATTGATCTCGTAAACCTTCCTTCAACTCTCAGGGAGTTTGTGGGACAGTCCCAAATTTCTCGTCTCGGCTGTTTCAAGTATGTGTGGTCATATATCAAAACCAATAATCTTCAGGATCCAACCAACAAGAATGTGGTCATTTGTGATGAGAAGTTAAAGAGTATATTGCTAGGCAAGTCCAAGATTGAGCTAGCCGAACTTCCCGCGCTGATTAAATTACATTTTCCCAAGAACCCCAAGTGAGTTATGCTTCCAGTTTAACCTCTGCCACATCCAGAATGACCTCTTCAATGTTTAGCCTCAATTTTGTATGAATCTCCTTCTAGGTTTCTTTTATATATAAGATCATAAATTTATTTGACTCTTCTTGTACCTCATGCCTTATGCTTTGTTACTCGTTTTATTTTATCAAGTTGTAACAACTCAAGTCCACTGCTAACAAATATTGTCCTCTTTGGATTTTCCCTTCTGAGCGTCCCTTCAAAGTTTTAAAACGCGTCTACTAGGAAGAGGTTT

Coding sequence (CDS)

ATGCTCAGATTTTGTTTGGGAGGACTTTCTGTGTTTTTCATATTTCCAAAGCTTCGTTTCATCTTCCGAGTAAACAGTTTTTATGTGTTTTTCCAGTGGAGGTGGAAGCGAACTAGTTGTGCAGAAAAAATGCTGCCGCAACGGATGAAGACGGCCATTACAGATAACCCGAAGAAGCTTGCTAGCTTGATTGATCTCGTAAACCTTCCTTCAACTCTCAGGGAGTTTGTGGGACAGTCCCAAATTTCTCGTCTCGGCTGTTTCAAGTATGTGTGGTCATATATCAAAACCAATAATCTTCAGGATCCAACCAACAAGAATGTGGTCATTTGTGATGAGAAGTTAAAGAGTATATTGCTAGGCAAGTCCAAGATTGAGCTAGCCGAACTTCCCGCGCTGATTAAATTACATTTTCCCAAGAACCCCAAGTGA

Protein sequence

MLRFCLGGLSVFFIFPKLRFIFRVNSFYVFFQWRWKRTSCAEKMLPQRMKTAITDNPKKLASLIDLVNLPSTLREFVGQSQISRLGCFKYVWSYIKTNNLQDPTNKNVVICDEKLKSILLGKSKIELAELPALIKLHFPKNPK
Homology
[Close]
BLAST of Cp4.1LG10g12520 vs. Swiss-Prot
Match: UAF30_SCHPO (Upstream activation factor subunit spp27 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=spp27 PE=1 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 1.5e-07
Identity = 24/52 (46.15%), Postives = 35/52 (67.31%), Query Frame = 1 

Query: 67  VNLPSTLREFVGQSQISRLGCFKYVWSYIKTNNLQDPTNKNVVICDEKLKSI 119
           + L   L EF+G  Q+SR    K +W YIK ++LQDP +K  ++CD+KLKS+
Sbjct: 121 MKLSPKLAEFLGLEQLSRPQTVKKLWEYIKAHDLQDPNDKRTILCDDKLKSV 172

[Close]
BLAST of Cp4.1LG10g12520 vs. Swiss-Prot
Match: UAF30_YEAST (Upstream activation factor subunit UAF30 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=UAF30 PE=1 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 2.6e-07
Identity = 27/77 (35.06%), Postives = 48/77 (62.34%), Query Frame = 1 

Query: 67  VNLPSTLREFVGQSQISRLGCFKYVWSYIKTNNLQDPTNKNVVICDEKLKSILLGKSKIE 126
           V L  +L   +G+ +++R    + +W+YIK +NLQ+P NK  ++CDEKL+ ++LGKS   
Sbjct: 124 VTLSKSLASLLGEHELTRTEVVRRLWAYIKAHNLQNPNNKKEILCDEKLE-LILGKS-TN 183

Query: 127 LAELPALIKLHFPKNPK 144
           + E+  ++  H  +  K
Sbjct: 184 MFEMHKILASHMTEPKK 198

[Close]
BLAST of Cp4.1LG10g12520 vs. Swiss-Prot
Match: TRI1_YEAST (Protein TRI1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TRI1 PE=1 SV=1)

HSP 1 Score: 52.0 bits (123), Expect = 6.3e-06
Identity = 27/90 (30.00%), Postives = 51/90 (56.67%), Query Frame = 1 

Query: 48  RMKTAITDNPKKLASLIDLVNLPSTLREFVGQSQISRLGCFKYVWSYIKTNNLQDPTNKN 107
           + K    D+P   +  +  V L + L++F+G  ++ R    K +W YIK ++LQ+P ++ 
Sbjct: 105 KRKKKKNDSPDSNSISVRKVLLSAPLQKFLGSEELPRTQVVKMIWQYIKEHDLQNPKDRR 164

Query: 108 VVICDEKLKSILLGKSKIELAELPALIKLH 138
            ++CDEK++ I  GK K+ +  +  L+  H
Sbjct: 165 EILCDEKMEPI-FGK-KMTMFSMNKLLTKH 192

[Close]
BLAST of Cp4.1LG10g12520 vs. TrEMBL
Match: A0A0A0L2E1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G493210 PE=4 SV=1)

HSP 1 Score: 183.3 bits (464), Expect = 2.0e-43
Identity = 91/101 (90.10%), Postives = 94/101 (93.07%), Query Frame = 1 

Query: 43  KMLPQRMKTAITDNPKKLASLIDLVNLPSTLREFVGQSQISRLGCFKYVWSYIKTNNLQD 102
           KM  +RMK AITDNPKKLA+LIDLVNLPSTLREFVG SQISRLGCFK VWSYIKTNNLQD
Sbjct: 92  KMATKRMKMAITDNPKKLANLIDLVNLPSTLREFVGHSQISRLGCFKCVWSYIKTNNLQD 151

Query: 103 PTNKNVVICDEKLKSILLGKSKIELAELPALIKLHFPKNPK 144
           PTNKNVVICDEKLKSILLGK K+ELAELPALIKLHFPKN K
Sbjct: 152 PTNKNVVICDEKLKSILLGKPKVELAELPALIKLHFPKNSK 192

[Close]
BLAST of Cp4.1LG10g12520 vs. TrEMBL
Match: A0A151SBL4_CAJCA (Upstream activation factor subunit UAF30 OS=Cajanus cajan GN=KK1_025905 PE=4 SV=1)

HSP 1 Score: 182.2 bits (461), Expect = 4.5e-43
Identity = 88/100 (88.00%), Postives = 94/100 (94.00%), Query Frame = 1 

Query: 44  MLPQRMKTAITDNPKKLASLIDLVNLPSTLREFVGQSQISRLGCFKYVWSYIKTNNLQDP 103
           MLPQRMK AITDNPKKLA+LIDL+NLPSTLREFVGQSQISRLGCFK VWSYIKTNNLQDP
Sbjct: 1   MLPQRMKKAITDNPKKLANLIDLINLPSTLREFVGQSQISRLGCFKCVWSYIKTNNLQDP 60

Query: 104 TNKNVVICDEKLKSILLGKSKIELAELPALIKLHFPKNPK 144
            NKNVV CDEKLKSILLGK +++LAELPALIK+HFPK PK
Sbjct: 61  NNKNVVNCDEKLKSILLGKPQVDLAELPALIKMHFPKEPK 100

[Close]
BLAST of Cp4.1LG10g12520 vs. TrEMBL
Match: C6T3J2_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_08G321900 PE=2 SV=1)

HSP 1 Score: 180.3 bits (456), Expect = 1.7e-42
Identity = 88/100 (88.00%), Postives = 93/100 (93.00%), Query Frame = 1 

Query: 44  MLPQRMKTAITDNPKKLASLIDLVNLPSTLREFVGQSQISRLGCFKYVWSYIKTNNLQDP 103
           MLPQRMK AITDNPKKLA+LIDLVNLPSTLREFVGQSQISRLGCFK +WSYIKTNNLQD 
Sbjct: 1   MLPQRMKKAITDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFKCIWSYIKTNNLQDQ 60

Query: 104 TNKNVVICDEKLKSILLGKSKIELAELPALIKLHFPKNPK 144
            NKNVV CDEKLKSILLGK ++ELAELPALIK+HFPK PK
Sbjct: 61  NNKNVVNCDEKLKSILLGKPQVELAELPALIKMHFPKEPK 100

[Close]
BLAST of Cp4.1LG10g12520 vs. TrEMBL
Match: A0A0B2NVJ3_GLYSO (Upstream activation factor subunit spp27 OS=Glycine soja GN=glysoja_006364 PE=4 SV=1)

HSP 1 Score: 180.3 bits (456), Expect = 1.7e-42
Identity = 88/100 (88.00%), Postives = 93/100 (93.00%), Query Frame = 1 

Query: 44  MLPQRMKTAITDNPKKLASLIDLVNLPSTLREFVGQSQISRLGCFKYVWSYIKTNNLQDP 103
           MLPQRMK AITDNPKKLA+LIDLVNLPSTLREFVGQSQISRLGCFK +WSYIKTNNLQD 
Sbjct: 1   MLPQRMKKAITDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFKCIWSYIKTNNLQDQ 60

Query: 104 TNKNVVICDEKLKSILLGKSKIELAELPALIKLHFPKNPK 144
            NKNVV CDEKLKSILLGK ++ELAELPALIK+HFPK PK
Sbjct: 61  NNKNVVNCDEKLKSILLGKPQVELAELPALIKMHFPKEPK 100

[Close]
BLAST of Cp4.1LG10g12520 vs. TrEMBL
Match: I1N0J4_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_18G090500 PE=4 SV=1)

HSP 1 Score: 178.3 bits (451), Expect = 6.5e-42
Identity = 88/100 (88.00%), Postives = 92/100 (92.00%), Query Frame = 1 

Query: 44  MLPQRMKTAITDNPKKLASLIDLVNLPSTLREFVGQSQISRLGCFKYVWSYIKTNNLQDP 103
           MLPQRMK AITDNPKKLA+LIDLVNLPSTLREFVGQSQISRLGCFK VW YIKTNNLQD 
Sbjct: 1   MLPQRMKKAITDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFKCVWFYIKTNNLQDQ 60

Query: 104 TNKNVVICDEKLKSILLGKSKIELAELPALIKLHFPKNPK 144
            NKNVV CDEKLKSILLGK ++ELAELPALIK+HFPK PK
Sbjct: 61  NNKNVVNCDEKLKSILLGKPQVELAELPALIKMHFPKEPK 100

[Close]
BLAST of Cp4.1LG10g12520 vs. TAIR10
Match: AT4G26810.1 (AT4G26810.1 SWIB/MDM2 domain superfamily protein)

HSP 1 Score: 173.7 bits (439), Expect = 8.1e-44
Identity = 84/100 (84.00%), Postives = 90/100 (90.00%), Query Frame = 1 

Query: 44  MLPQRMKTAITDNPKKLASLIDLVNLPSTLREFVGQSQISRLGCFKYVWSYIKTNNLQDP 103
           MLPQR+K AITDNPKKL +LIDLVNLPSTLR FVGQSQISRLGCF  VWSYIKTNNLQDP
Sbjct: 1   MLPQRLKKAITDNPKKLGNLIDLVNLPSTLRNFVGQSQISRLGCFMRVWSYIKTNNLQDP 60

Query: 104 TNKNVVICDEKLKSILLGKSKIELAELPALIKLHFPKNPK 144
            NKNVVICDEKLKSILLGK ++EL +LP+LIKLHFPK  K
Sbjct: 61  KNKNVVICDEKLKSILLGKQRVELVDLPSLIKLHFPKEQK 100

[Close]
BLAST of Cp4.1LG10g12520 vs. TAIR10
Match: AT2G35605.1 (AT2G35605.1 SWIB/MDM2 domain superfamily protein)

HSP 1 Score: 78.2 bits (191), Expect = 4.6e-15
Identity = 32/79 (40.51%), Postives = 51/79 (64.56%), Query Frame = 1 

Query: 63  LIDLVNLPSTLREFVGQSQISRLGCFKYVWSYIKTNNLQDPTNKNVVICDEKLKSILLGK 122
           ++ +V +   L  F+G++++SR    K +W YIK NNLQ+P NK  ++CDE+LK+I  GK
Sbjct: 30  ILKVVPVSKPLANFIGENEVSRTTAVKKIWEYIKLNNLQNPVNKREILCDEQLKTIFSGK 89

Query: 123 SKIELAELPALIKLHFPKN 142
             +   E+  L+  HFPK+
Sbjct: 90  DTVGFLEISKLLSQHFPKS 108

[Close]
BLAST of Cp4.1LG10g12520 vs. TAIR10
Match: AT1G31760.1 (AT1G31760.1 SWIB/MDM2 domain superfamily protein)

HSP 1 Score: 71.2 bits (173), Expect = 5.7e-13
Identity = 30/69 (43.48%), Postives = 45/69 (65.22%), Query Frame = 1 

Query: 73  LREFVGQSQISRLGCFKYVWSYIKTNNLQDPTNKNVVICDEKLKSILLGKSKIELAELPA 132
           L  F G+ +++R    K VW Y+K +NLQ+P NK  + CD+KLK+I  GK K+ + E+  
Sbjct: 43  LASFAGERELTRGSALKKVWEYVKLHNLQNPANKKEIHCDDKLKTIFDGKDKVGITEIMK 102

Query: 133 LIKLHFPKN 142
           L+  HFPK+
Sbjct: 103 LLSPHFPKS 111

[Close]
BLAST of Cp4.1LG10g12520 vs. TAIR10
Match: AT4G34290.1 (AT4G34290.1 SWIB/MDM2 domain superfamily protein)

HSP 1 Score: 65.5 bits (158), Expect = 3.1e-11
Identity = 29/66 (43.94%), Postives = 42/66 (63.64%), Query Frame = 1 

Query: 73  LREFVGQSQISRLGCFKYVWSYIKTNNLQDPTNKNVVICDEKLKSILLGKSKIELAELPA 132
           +++ VG  +I R    K +W+YIK ++LQDP NK  ++CDEKLK I  GK ++   E+  
Sbjct: 78  MQDVVGVPEIPRTQALKRIWAYIKEHDLQDPQNKRDILCDEKLKKIFEGKERVGFLEIAK 137

Query: 133 LIKLHF 139
           LI  HF
Sbjct: 138 LIGPHF 143

[Close]
BLAST of Cp4.1LG10g12520 vs. TAIR10
Match: AT3G03590.1 (AT3G03590.1 SWIB/MDM2 domain superfamily protein)

HSP 1 Score: 65.5 bits (158), Expect = 3.1e-11
Identity = 34/109 (31.19%), Postives = 56/109 (51.38%), Query Frame = 1 

Query: 36  KRTSCAEKMLPQRMKTAITDNPKKLA----SLIDLVNLPSTLREFVGQSQISRLGCFKYV 95
           K+ +   K   +    A +D+P K       +  +  +   L +F+G  + SR    K +
Sbjct: 33  KKPAAKPKAKAKPKPKAKSDSPAKKTPRSTGIFKVTPVSPVLAQFLGTGETSRTDAIKGI 92

Query: 96  WSYIKTNNLQDPTNKNVVICDEKLKSILLGKSKIELAELPALIKLHFPK 141
           W+YIK+++LQ+P +K  + CDE LK I  GK K+   E+  L+  HF K
Sbjct: 93  WTYIKSHDLQNPADKREIFCDETLKLIFEGKDKVGFLEISKLLSPHFVK 141

[Close]
BLAST of Cp4.1LG10g12520 vs. NCBI nr
Match: gi|659096818|ref|XP_008449303.1| (PREDICTED: upstream activation factor subunit spp27 [Cucumis melo])

HSP 1 Score: 184.1 bits (466), Expect = 1.7e-43
Identity = 90/100 (90.00%), Postives = 95/100 (95.00%), Query Frame = 1 

Query: 44  MLPQRMKTAITDNPKKLASLIDLVNLPSTLREFVGQSQISRLGCFKYVWSYIKTNNLQDP 103
           M  +RMK A+TDNPKKLA+LIDLVNLPSTLREFVGQSQISRLGCFK VWSYIKTNNLQDP
Sbjct: 1   MTIRRMKMAMTDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFKCVWSYIKTNNLQDP 60

Query: 104 TNKNVVICDEKLKSILLGKSKIELAELPALIKLHFPKNPK 144
           TNKNVV+CDEKLKSILLGK K+ELAELPALIKLHFPKNPK
Sbjct: 61  TNKNVVVCDEKLKSILLGKPKVELAELPALIKLHFPKNPK 100

[Close]
BLAST of Cp4.1LG10g12520 vs. NCBI nr
Match: gi|700199619|gb|KGN54777.1| (hypothetical protein Csa_4G493210 [Cucumis sativus])

HSP 1 Score: 183.3 bits (464), Expect = 2.9e-43
Identity = 91/101 (90.10%), Postives = 94/101 (93.07%), Query Frame = 1 

Query: 43  KMLPQRMKTAITDNPKKLASLIDLVNLPSTLREFVGQSQISRLGCFKYVWSYIKTNNLQD 102
           KM  +RMK AITDNPKKLA+LIDLVNLPSTLREFVG SQISRLGCFK VWSYIKTNNLQD
Sbjct: 92  KMATKRMKMAITDNPKKLANLIDLVNLPSTLREFVGHSQISRLGCFKCVWSYIKTNNLQD 151

Query: 103 PTNKNVVICDEKLKSILLGKSKIELAELPALIKLHFPKNPK 144
           PTNKNVVICDEKLKSILLGK K+ELAELPALIKLHFPKN K
Sbjct: 152 PTNKNVVICDEKLKSILLGKPKVELAELPALIKLHFPKNSK 192

[Close]
BLAST of Cp4.1LG10g12520 vs. NCBI nr
Match: gi|1012340959|gb|KYP52168.1| (Upstream activation factor subunit UAF30 [Cajanus cajan])

HSP 1 Score: 182.2 bits (461), Expect = 6.5e-43
Identity = 88/100 (88.00%), Postives = 94/100 (94.00%), Query Frame = 1 

Query: 44  MLPQRMKTAITDNPKKLASLIDLVNLPSTLREFVGQSQISRLGCFKYVWSYIKTNNLQDP 103
           MLPQRMK AITDNPKKLA+LIDL+NLPSTLREFVGQSQISRLGCFK VWSYIKTNNLQDP
Sbjct: 1   MLPQRMKKAITDNPKKLANLIDLINLPSTLREFVGQSQISRLGCFKCVWSYIKTNNLQDP 60

Query: 104 TNKNVVICDEKLKSILLGKSKIELAELPALIKLHFPKNPK 144
            NKNVV CDEKLKSILLGK +++LAELPALIK+HFPK PK
Sbjct: 61  NNKNVVNCDEKLKSILLGKPQVDLAELPALIKMHFPKEPK 100

[Close]
BLAST of Cp4.1LG10g12520 vs. NCBI nr
Match: gi|778694879|ref|XP_011653889.1| (PREDICTED: upstream activation factor subunit spp27 [Cucumis sativus])

HSP 1 Score: 181.4 bits (459), Expect = 1.1e-42
Identity = 90/100 (90.00%), Postives = 93/100 (93.00%), Query Frame = 1 

Query: 44  MLPQRMKTAITDNPKKLASLIDLVNLPSTLREFVGQSQISRLGCFKYVWSYIKTNNLQDP 103
           M  +RMK AITDNPKKLA+LIDLVNLPSTLREFVG SQISRLGCFK VWSYIKTNNLQDP
Sbjct: 1   MATKRMKMAITDNPKKLANLIDLVNLPSTLREFVGHSQISRLGCFKCVWSYIKTNNLQDP 60

Query: 104 TNKNVVICDEKLKSILLGKSKIELAELPALIKLHFPKNPK 144
           TNKNVVICDEKLKSILLGK K+ELAELPALIKLHFPKN K
Sbjct: 61  TNKNVVICDEKLKSILLGKPKVELAELPALIKLHFPKNSK 100

[Close]
BLAST of Cp4.1LG10g12520 vs. NCBI nr
Match: gi|351724909|ref|NP_001236050.1| (uncharacterized protein LOC100527179 [Glycine max])

HSP 1 Score: 180.3 bits (456), Expect = 2.5e-42
Identity = 88/100 (88.00%), Postives = 93/100 (93.00%), Query Frame = 1 

Query: 44  MLPQRMKTAITDNPKKLASLIDLVNLPSTLREFVGQSQISRLGCFKYVWSYIKTNNLQDP 103
           MLPQRMK AITDNPKKLA+LIDLVNLPSTLREFVGQSQISRLGCFK +WSYIKTNNLQD 
Sbjct: 1   MLPQRMKKAITDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFKCIWSYIKTNNLQDQ 60

Query: 104 TNKNVVICDEKLKSILLGKSKIELAELPALIKLHFPKNPK 144
            NKNVV CDEKLKSILLGK ++ELAELPALIK+HFPK PK
Sbjct: 61  NNKNVVNCDEKLKSILLGKPQVELAELPALIKMHFPKEPK 100

The following BLAST results are available for this feature:
BLAST of Cp4.1LG10g12520 vs. Swiss-Prot
Match NameE-valueIdentityDescription
UAF30_SCHPO1.5e-0746.15Upstream activation factor subunit spp27 OS=Schizosaccharomyces pombe (strain 97... [more]
UAF30_YEAST2.6e-0735.06Upstream activation factor subunit UAF30 OS=Saccharomyces cerevisiae (strain ATC... [more]
TRI1_YEAST6.3e-0630.00Protein TRI1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TRI1 PE... [more]
BLAST of Cp4.1LG10g12520 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L2E1_CUCSA2.0e-4390.10Uncharacterized protein OS=Cucumis sativus GN=Csa_4G493210 PE=4 SV=1[more]
A0A151SBL4_CAJCA4.5e-4388.00Upstream activation factor subunit UAF30 OS=Cajanus cajan GN=KK1_025905 PE=4 SV=... [more]
C6T3J2_SOYBN1.7e-4288.00Uncharacterized protein OS=Glycine max GN=GLYMA_08G321900 PE=2 SV=1[more]
A0A0B2NVJ3_GLYSO1.7e-4288.00Upstream activation factor subunit spp27 OS=Glycine soja GN=glysoja_006364 PE=4 ... [more]
I1N0J4_SOYBN6.5e-4288.00Uncharacterized protein OS=Glycine max GN=GLYMA_18G090500 PE=4 SV=1[more]
BLAST of Cp4.1LG10g12520 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G26810.18.1e-4484.00 SWIB/MDM2 domain superfamily protein[more]
AT2G35605.14.6e-1540.51 SWIB/MDM2 domain superfamily protein[more]
AT1G31760.15.7e-1343.48 SWIB/MDM2 domain superfamily protein[more]
AT4G34290.13.1e-1143.94 SWIB/MDM2 domain superfamily protein[more]
AT3G03590.13.1e-1131.19 SWIB/MDM2 domain superfamily protein[more]
BLAST of Cp4.1LG10g12520 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659096818|ref|XP_008449303.1|1.7e-4390.00PREDICTED: upstream activation factor subunit spp27 [Cucumis melo][more]
gi|700199619|gb|KGN54777.1|2.9e-4390.10hypothetical protein Csa_4G493210 [Cucumis sativus][more]
gi|1012340959|gb|KYP52168.1|6.5e-4388.00Upstream activation factor subunit UAF30 [Cajanus cajan][more]
gi|778694879|ref|XP_011653889.1|1.1e-4290.00PREDICTED: upstream activation factor subunit spp27 [Cucumis sativus][more]
gi|351724909|ref|NP_001236050.1|2.5e-4288.00uncharacterized protein LOC100527179 [Glycine max][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR019835SWIB_domain
IPR003121SWIB_MDM2_domain
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0005515 protein binding
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG10g12520.1Cp4.1LG10g12520.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003121SWIB/MDM2 domainGENE3DG3DSA:1.10.245.10coord: 59..141
score: 8.5
IPR003121SWIB/MDM2 domainPFAMPF02201SWIBcoord: 67..138
score: 1.4
IPR003121SWIB/MDM2 domainunknownSSF47592SWIB/MDM2 domaincoord: 56..141
score: 3.11
IPR019835SWIB domainSMARTSM00151swib_2coord: 63..143
score: 2.3
NoneNo IPR availablePANTHERPTHR13844BRG-1 ASSOCIATED FACTOR 60 BAF60coord: 47..143
score: 2.0
NoneNo IPR availablePANTHERPTHR13844:SF9SUBFAMILY NOT NAMEDcoord: 47..143
score: 2.0

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG10g12520CmaCh03G000230Cucurbita maxima (Rimu)cmacpeB654
Cp4.1LG10g12520CmoCh03G000240Cucurbita moschata (Rifu)cmocpeB604
Cp4.1LG10g12520Cla011684Watermelon (97103) v1cpewmB083
Cp4.1LG10g12520Csa4G493210Cucumber (Chinese Long) v2cpecuB073
Cp4.1LG10g12520ClCG04G002280Watermelon (Charleston Gray)cpewcgB077
Cp4.1LG10g12520CSPI04G19900Wild cucumber (PI 183967)cpecpiB067
Cp4.1LG10g12520Lsi01G020710Bottle gourd (USVL1VR-Ls)cpelsiB050
Cp4.1LG10g12520Bhi03G002325Wax gourdcpewgoB0090
Cp4.1LG10g12520Carg26093Silver-seed gourdcarcpeB0729
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG10g12520Cucurbita pepo (Zucchini)cpecpeB082
Cp4.1LG10g12520Wild cucumber (PI 183967)cpecpiB075
Cp4.1LG10g12520Cucumber (Chinese Long) v2cpecuB082
Cp4.1LG10g12520Watermelon (Charleston Gray)cpewcgB080
Cp4.1LG10g12520Watermelon (97103) v1cpewmB089
Cp4.1LG10g12520Melon (DHL92) v3.5.1cpemeB074
Cp4.1LG10g12520Cucumber (Gy14) v2cgybcpeB465
Cp4.1LG10g12520Melon (DHL92) v3.6.1cpemedB096
Cp4.1LG10g12520Silver-seed gourdcarcpeB0665
Cp4.1LG10g12520Cucumber (Chinese Long) v3cpecucB0077