CmaCh03G000230 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh03G000230
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionSWIB/MDM2 domain superfamily protein
LocationCma_Chr03 : 237246 .. 240360 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TAAAAAAAATAAATAAATCTTCATTTTTTCCAAATTACTTTTGGCATTTAAACAACTCAAAATCTATGCACTTGCAAACAATTCAAGGGCTCCAAGATCTCCTTCCCCTTGGTGATCCGACCCTATTTCGCTTTAGCCGCTGTATTTTCTGTCAATTCTTTCCAATTTCTAGAGGTTTTTCTTCTCCCTTTTCCCAGGTGCGAATTATAGCTATCTATTCCATGAACTCGATTTCCTTGCTTCTAGATTTTTTCATTCTCTGAACTGGGTTTCTTGATTTGAACTCGCTGGACTTCTTTTCTCTTGATTTCCCGAGAAATTTCGTGTTCTGTTTCACTCTCGGTGATTGAAAATCTATTGCACATAAGTTGTTTGATAAAATTCCCTTGAATCGATGCTCAGATTTTGTTTGGGAGGTTTTGGTTATTGAATGAGCTTGTTGCGCCTCAATTTGCAGGACTTTCTGTGATTTTCATAGTTTCTGTGATTTCCTTGCTTCTACTTTTTTCATTCTCTGAACTGGGTTTCTTGATTTGAACTCGCTGGACTTCTTTGCTCTTTGATTTCCCGAGAAATTTCGTGTTCTGTTTCACTCTCTGTGATTGAAAATCTTTTGCACATAAGATGTTTGATAAAATTCCCTTGAACCGATGCTCAGATTTTGTTTAGGAGGTTTGGGTTATTGAATGAGCTTATCGCGCCTCAATTTGCAGGAATTTCTGTGTTTTTCATATTTCCAAAGCTTCGTTTCATCTTCCAAGTAAACAGTTTTTATGTGTTTTTCCAGTGGAGGTGGAAGCGAACTAGTTGTGCAGAAAAAATGCTGCCGCAACGGATGAAGACGGCCATTACAGATAACCCGAAGAAGCTTGCTAACTTGATTGATCTCGTAAACCTTCCTTCAACTCTCAGGGAGTTTGTGGGACAGTCCCAAATTTCTCGTCTGGGCTGTTTCAAGTATGTGTGGTCATATATCAAAACCAATAATCTTCAGGTTCTATTCTTTGTCTAATTTTTATGGCCTTTTTTTTAATTAGTTTTAGATGCATATTGATTATACTGCTATCAACCTATAACAGAGACTTCCCTTGTTAAATCTACTTTCAAAATAGTTTTCATAGATTCTATATTGTATTCTGGTTGAAGTATGGCTTAAAATGGGCAAGAGGCTAAGGAACGAAAGGAAAATAGTAATCAAAGAGGAGAAGAAAGGTCATGAGTCTGAATAATCAGGATGATAAAGAATATCTTAAAATGAAAGTTATGAGAACCTGATAGAGGGTCAAGGTCCTTGGAACGTCCCTATATTTGAATAATCAAATACGTGACGGTCCTTGAAACGTTGCATCACGTATACCTTGAAACTAGATTATGAGAACCTGATGTACATGACATAATCTAGGTTCTGAAGTATACGTGACAGTCCTTGGTCCTTGGAACGTCCCTAGGTTTGAATAATCAAATACGTGATAGTCCTTGGAATGTCACGTCATGTATACTTTGAAACTAGATTATGAGAACCTGATGTACATGACATAATCTAGGTTATTAAGTATACGCAACAGTCCTTGGTCCCTGGAACGTCTCGTATACTTTGAAACTGTATAGAAGAGCTACAAGATAACTCAAGTATTCGAGGTACTTCGAATGTTCCTAGATTTGAATATACACACTCGAGCCTAAACCATCTGAACAGTTCACCCAAATAATATTAACTACTCCCGTGGGATTCTTATCAAAGAAGAGATCCCAAATGAATTGGCTTCTTCGAAAAAAACCTTGTTCGTTTGAAGATCTATCTCGTGCTTGGTACTGTACGGTTCCACTCTAGAAGAACTTCGAATCATTCTCTTGAAACTCATCCTCTTAAAAGCCCCAACGGCGCCATATTATAGGAGCTCATACTATGTGATTGAATAAATCCTTCTTTATCGGTTGCAGGTTGAGGAGTCCTTCTCCTTCCTCTTCTTCAAACTCCGATTGATATTGTTCAACCACGGGGTCAAAGAAGGAATGTGATCTTGATTTATTACCCCAGGGAAGACCTAACTAGCTCATAGGCAACATAGAGGATCTCATAACCCACCACATGAACCCATCTTTCAAGCTTTACTGATTCAATGCTAATACCAACTAACCAAAATTTCGTCTTATTTTACCTATCAAGTTCTATTAAGGCCTACAAAGGACTCCTCCTTATGCATAAGGAAATAGTATTATAAACTGTAAATGAGTAAGATGGATGATTTTTGTCTCTCCCAACAAACAACCCTTCTGCTAAACCTTTATCCATGCCTCTCAAAATAAGTCTGTTAAGCACATCCACGACCACCCCAAAAGAGAATGATGATTGATTTTACTTGTAAACTCAATAACTTTTGGTCGATCATGAATTTATAAGTAAGGAATACATCTCCATTGGTACGAGGCCTTTTGGGAGAAACCAAAAGCAAAGCCACGAGAGCTTATGCTCCAAGTGGACTATATATCATACCATTGTGGAGAGTCGTGGTTCATAACATTTGCATTACACGTTATTATTGTTCCATGGTCATGTATTATGATTTTGGGAAGCTAGAAGTACTTGAAACTTCAATGAAGTAGCACTTCTTTTTCTAAATGTTAAAAATATGTTTCTGTTGTCCCATAAGTGGCTTTCTTTATTCTGCTAAAAGGTTATGGGTATGTACCTTTCTTGTCCAGGATCCAACCAACAAGAATGTGGTCATTTGTGATGAGAAGTTAAGGAGTATATTGCTAGGCAAGTCCAAGGTTGAGCTAGCCGAACTTCCCGCGCTGATTAAATTACATTTTCCCAAGAACCCCAAGTGAGTTATGCTTGCAGTTTAACCTCTGCCACATCCAGAATGACCTCTTCAATGTTTAGCCTCAATTTTGTATGAATCTCCTTCTAGGTTTCTTTTATATATATTATCAGAAATTTATTTGACTCTTCTTGTACCTCATGCCATATGCTTTGTTATACATTGCATATACATTTTATTTTATCCACGGCTAGCAAATATTATCCTCTTTAAATTTTTTCTTTCGGGCTTCCTTTCAAGGTTTTAAACCGCATCTACTAGAAAGAGGTTTCTACACCCTTATAAGACCC

mRNA sequence

TAAAAAAAATAAATAAATCTTCATTTTTTCCAAATTACTTTTGGCATTTAAACAACTCAAAATCTATGCACTTGCAAACAATTCAAGGGCTCCAAGATCTCCTTCCCCTTGGTGATCCGACCCTATTTCGCTTTAGCCGCTGTATTTTCTGTCAATTCTTTCCAATTTCTAGAGGTTTTTCTTCTCCCTTTTCCCAGTGGAGGTGGAAGCGAACTAGTTGTGCAGAAAAAATGCTGCCGCAACGGATGAAGACGGCCATTACAGATAACCCGAAGAAGCTTGCTAACTTGATTGATCTCGTAAACCTTCCTTCAACTCTCAGGGAGTTTGTGGGACAGTCCCAAATTTCTCGTCTGGGCTGTTTCAAGTATGTGTGGTCATATATCAAAACCAATAATCTTCAGGATCCAACCAACAAGAATGTGGTCATTTGTGATGAGAAGTTAAGGAGTATATTGCTAGGCAAGTCCAAGGTTGAGCTAGCCGAACTTCCCGCGCTGATTAAATTACATTTTCCCAAGAACCCCAAGTGAGTTATGCTTGCAGTTTAACCTCTGCCACATCCAGAATGACCTCTTCAATGTTTAGCCTCAATTTTGTATGAATCTCCTTCTAGGTTTCTTTTATATATATTATCAGAAATTTATTTGACTCTTCTTGTACCTCATGCCATATGCTTTGTTATACATTGCATATACATTTTATTTTATCCACGGCTAGCAAATATTATCCTCTTTAAATTTTTTCTTTCGGGCTTCCTTTCAAGGTTTTAAACCGCATCTACTAGAAAGAGGTTTCTACACCCTTATAAGACCC

Coding sequence (CDS)

ATGCACTTGCAAACAATTCAAGGGCTCCAAGATCTCCTTCCCCTTGGTGATCCGACCCTATTTCGCTTTAGCCGCTGTATTTTCTGTCAATTCTTTCCAATTTCTAGAGGTTTTTCTTCTCCCTTTTCCCAGTGGAGGTGGAAGCGAACTAGTTGTGCAGAAAAAATGCTGCCGCAACGGATGAAGACGGCCATTACAGATAACCCGAAGAAGCTTGCTAACTTGATTGATCTCGTAAACCTTCCTTCAACTCTCAGGGAGTTTGTGGGACAGTCCCAAATTTCTCGTCTGGGCTGTTTCAAGTATGTGTGGTCATATATCAAAACCAATAATCTTCAGGATCCAACCAACAAGAATGTGGTCATTTGTGATGAGAAGTTAAGGAGTATATTGCTAGGCAAGTCCAAGGTTGAGCTAGCCGAACTTCCCGCGCTGATTAAATTACATTTTCCCAAGAACCCCAAGTGA

Protein sequence

MHLQTIQGLQDLLPLGDPTLFRFSRCIFCQFFPISRGFSSPFSQWRWKRTSCAEKMLPQRMKTAITDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFKYVWSYIKTNNLQDPTNKNVVICDEKLRSILLGKSKVELAELPALIKLHFPKNPK
Homology
[Close]
BLAST of CmaCh03G000230 vs. Swiss-Prot
Match: UAF30_YEAST (Upstream activation factor subunit UAF30 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=UAF30 PE=1 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 2.1e-07
Identity = 27/77 (35.06%), Postives = 47/77 (61.04%), Query Frame = 1 

Query: 79  VNLPSTLREFVGQSQISRLGCFKYVWSYIKTNNLQDPTNKNVVICDEKLRSILLGKSKVE 138
           V L  +L   +G+ +++R    + +W+YIK +NLQ+P NK  ++CDEKL  ++LGKS   
Sbjct: 124 VTLSKSLASLLGEHELTRTEVVRRLWAYIKAHNLQNPNNKKEILCDEKL-ELILGKS-TN 183

Query: 139 LAELPALIKLHFPKNPK 156
           + E+  ++  H  +  K
Sbjct: 184 MFEMHKILASHMTEPKK 198

[Close]
BLAST of CmaCh03G000230 vs. Swiss-Prot
Match: UAF30_SCHPO (Upstream activation factor subunit spp27 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=spp27 PE=1 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 2.8e-07
Identity = 23/52 (44.23%), Postives = 35/52 (67.31%), Query Frame = 1 

Query: 79  VNLPSTLREFVGQSQISRLGCFKYVWSYIKTNNLQDPTNKNVVICDEKLRSI 131
           + L   L EF+G  Q+SR    K +W YIK ++LQDP +K  ++CD+KL+S+
Sbjct: 121 MKLSPKLAEFLGLEQLSRPQTVKKLWEYIKAHDLQDPNDKRTILCDDKLKSV 172

[Close]
BLAST of CmaCh03G000230 vs. Swiss-Prot
Match: TRI1_YEAST (Protein TRI1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TRI1 PE=1 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 8.9e-06
Identity = 27/90 (30.00%), Postives = 50/90 (55.56%), Query Frame = 1 

Query: 60  RMKTAITDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFKYVWSYIKTNNLQDPTNKN 119
           + K    D+P   +  +  V L + L++F+G  ++ R    K +W YIK ++LQ+P ++ 
Sbjct: 105 KRKKKKNDSPDSNSISVRKVLLSAPLQKFLGSEELPRTQVVKMIWQYIKEHDLQNPKDRR 164

Query: 120 VVICDEKLRSILLGKSKVELAELPALIKLH 150
            ++CDEK+  I  GK K+ +  +  L+  H
Sbjct: 165 EILCDEKMEPI-FGK-KMTMFSMNKLLTKH 192

[Close]
BLAST of CmaCh03G000230 vs. TrEMBL
Match: A0A0A0L2E1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G493210 PE=4 SV=1)

HSP 1 Score: 184.5 bits (467), Expect = 9.8e-44
Identity = 92/101 (91.09%), Postives = 94/101 (93.07%), Query Frame = 1 

Query: 55  KMLPQRMKTAITDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFKYVWSYIKTNNLQD 114
           KM  +RMK AITDNPKKLANLIDLVNLPSTLREFVG SQISRLGCFK VWSYIKTNNLQD
Sbjct: 92  KMATKRMKMAITDNPKKLANLIDLVNLPSTLREFVGHSQISRLGCFKCVWSYIKTNNLQD 151

Query: 115 PTNKNVVICDEKLRSILLGKSKVELAELPALIKLHFPKNPK 156
           PTNKNVVICDEKL+SILLGK KVELAELPALIKLHFPKN K
Sbjct: 152 PTNKNVVICDEKLKSILLGKPKVELAELPALIKLHFPKNSK 192

[Close]
BLAST of CmaCh03G000230 vs. TrEMBL
Match: A0A151SBL4_CAJCA (Upstream activation factor subunit UAF30 OS=Cajanus cajan GN=KK1_025905 PE=4 SV=1)

HSP 1 Score: 183.7 bits (465), Expect = 1.7e-43
Identity = 89/100 (89.00%), Postives = 94/100 (94.00%), Query Frame = 1 

Query: 56  MLPQRMKTAITDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFKYVWSYIKTNNLQDP 115
           MLPQRMK AITDNPKKLANLIDL+NLPSTLREFVGQSQISRLGCFK VWSYIKTNNLQDP
Sbjct: 1   MLPQRMKKAITDNPKKLANLIDLINLPSTLREFVGQSQISRLGCFKCVWSYIKTNNLQDP 60

Query: 116 TNKNVVICDEKLRSILLGKSKVELAELPALIKLHFPKNPK 156
            NKNVV CDEKL+SILLGK +V+LAELPALIK+HFPK PK
Sbjct: 61  NNKNVVNCDEKLKSILLGKPQVDLAELPALIKMHFPKEPK 100

[Close]
BLAST of CmaCh03G000230 vs. TrEMBL
Match: A0A0B2NVJ3_GLYSO (Upstream activation factor subunit spp27 OS=Glycine soja GN=glysoja_006364 PE=4 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 6.4e-43
Identity = 89/100 (89.00%), Postives = 93/100 (93.00%), Query Frame = 1 

Query: 56  MLPQRMKTAITDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFKYVWSYIKTNNLQDP 115
           MLPQRMK AITDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFK +WSYIKTNNLQD 
Sbjct: 1   MLPQRMKKAITDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFKCIWSYIKTNNLQDQ 60

Query: 116 TNKNVVICDEKLRSILLGKSKVELAELPALIKLHFPKNPK 156
            NKNVV CDEKL+SILLGK +VELAELPALIK+HFPK PK
Sbjct: 61  NNKNVVNCDEKLKSILLGKPQVELAELPALIKMHFPKEPK 100

[Close]
BLAST of CmaCh03G000230 vs. TrEMBL
Match: C6T3J2_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_08G321900 PE=2 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 6.4e-43
Identity = 89/100 (89.00%), Postives = 93/100 (93.00%), Query Frame = 1 

Query: 56  MLPQRMKTAITDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFKYVWSYIKTNNLQDP 115
           MLPQRMK AITDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFK +WSYIKTNNLQD 
Sbjct: 1   MLPQRMKKAITDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFKCIWSYIKTNNLQDQ 60

Query: 116 TNKNVVICDEKLRSILLGKSKVELAELPALIKLHFPKNPK 156
            NKNVV CDEKL+SILLGK +VELAELPALIK+HFPK PK
Sbjct: 61  NNKNVVNCDEKLKSILLGKPQVELAELPALIKMHFPKEPK 100

[Close]
BLAST of CmaCh03G000230 vs. TrEMBL
Match: A0A061F5T9_THECC (SWIB/MDM2 domain superfamily protein OS=Theobroma cacao GN=TCM_030796 PE=4 SV=1)

HSP 1 Score: 180.3 bits (456), Expect = 1.9e-42
Identity = 88/100 (88.00%), Postives = 92/100 (92.00%), Query Frame = 1 

Query: 56  MLPQRMKTAITDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFKYVWSYIKTNNLQDP 115
           MLPQR+K AITDNPKKLANLIDLVNLPST+REFVGQSQISRLGCF  VWSYIK NNLQDP
Sbjct: 1   MLPQRLKKAITDNPKKLANLIDLVNLPSTVREFVGQSQISRLGCFMRVWSYIKQNNLQDP 60

Query: 116 TNKNVVICDEKLRSILLGKSKVELAELPALIKLHFPKNPK 156
            NKN+V CDEKLRSILLGK +VELAELPALIKLHFPK PK
Sbjct: 61  NNKNIVNCDEKLRSILLGKPRVELAELPALIKLHFPKEPK 100

[Close]
BLAST of CmaCh03G000230 vs. TAIR10
Match: AT4G26810.1 (AT4G26810.1 SWIB/MDM2 domain superfamily protein)

HSP 1 Score: 175.3 bits (443), Expect = 3.0e-44
Identity = 85/100 (85.00%), Postives = 90/100 (90.00%), Query Frame = 1 

Query: 56  MLPQRMKTAITDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFKYVWSYIKTNNLQDP 115
           MLPQR+K AITDNPKKL NLIDLVNLPSTLR FVGQSQISRLGCF  VWSYIKTNNLQDP
Sbjct: 1   MLPQRLKKAITDNPKKLGNLIDLVNLPSTLRNFVGQSQISRLGCFMRVWSYIKTNNLQDP 60

Query: 116 TNKNVVICDEKLRSILLGKSKVELAELPALIKLHFPKNPK 156
            NKNVVICDEKL+SILLGK +VEL +LP+LIKLHFPK  K
Sbjct: 61  KNKNVVICDEKLKSILLGKQRVELVDLPSLIKLHFPKEQK 100

[Close]
BLAST of CmaCh03G000230 vs. TAIR10
Match: AT2G35605.1 (AT2G35605.1 SWIB/MDM2 domain superfamily protein)

HSP 1 Score: 77.8 bits (190), Expect = 6.6e-15
Identity = 32/79 (40.51%), Postives = 51/79 (64.56%), Query Frame = 1 

Query: 75  LIDLVNLPSTLREFVGQSQISRLGCFKYVWSYIKTNNLQDPTNKNVVICDEKLRSILLGK 134
           ++ +V +   L  F+G++++SR    K +W YIK NNLQ+P NK  ++CDE+L++I  GK
Sbjct: 30  ILKVVPVSKPLANFIGENEVSRTTAVKKIWEYIKLNNLQNPVNKREILCDEQLKTIFSGK 89

Query: 135 SKVELAELPALIKLHFPKN 154
             V   E+  L+  HFPK+
Sbjct: 90  DTVGFLEISKLLSQHFPKS 108

[Close]
BLAST of CmaCh03G000230 vs. TAIR10
Match: AT3G03590.1 (AT3G03590.1 SWIB/MDM2 domain superfamily protein)

HSP 1 Score: 71.2 bits (173), Expect = 6.1e-13
Identity = 43/137 (31.39%), Postives = 68/137 (49.64%), Query Frame = 1 

Query: 20  LFRFSRCIFCQFFPISRGFSSPFSQWRWKRTSCAEKMLPQRMKTAITDNPKKLA----NL 79
           +FR +R +     P SR  SS  S    K+ +   K   +    A +D+P K       +
Sbjct: 8   VFRGARSLLA---PASRATSSLVSAGSTKKPAAKPKAKAKPKPKAKSDSPAKKTPRSTGI 67

Query: 80  IDLVNLPSTLREFVGQSQISRLGCFKYVWSYIKTNNLQDPTNKNVVICDEKLRSILLGKS 139
             +  +   L +F+G  + SR    K +W+YIK+++LQ+P +K  + CDE L+ I  GK 
Sbjct: 68  FKVTPVSPVLAQFLGTGETSRTDAIKGIWTYIKSHDLQNPADKREIFCDETLKLIFEGKD 127

Query: 140 KVELAELPALIKLHFPK 153
           KV   E+  L+  HF K
Sbjct: 128 KVGFLEISKLLSPHFVK 141

[Close]
BLAST of CmaCh03G000230 vs. TAIR10
Match: AT1G31760.1 (AT1G31760.1 SWIB/MDM2 domain superfamily protein)

HSP 1 Score: 70.9 bits (172), Expect = 8.0e-13
Identity = 30/69 (43.48%), Postives = 45/69 (65.22%), Query Frame = 1 

Query: 85  LREFVGQSQISRLGCFKYVWSYIKTNNLQDPTNKNVVICDEKLRSILLGKSKVELAELPA 144
           L  F G+ +++R    K VW Y+K +NLQ+P NK  + CD+KL++I  GK KV + E+  
Sbjct: 43  LASFAGERELTRGSALKKVWEYVKLHNLQNPANKKEIHCDDKLKTIFDGKDKVGITEIMK 102

Query: 145 LIKLHFPKN 154
           L+  HFPK+
Sbjct: 103 LLSPHFPKS 111

[Close]
BLAST of CmaCh03G000230 vs. TAIR10
Match: AT4G34290.1 (AT4G34290.1 SWIB/MDM2 domain superfamily protein)

HSP 1 Score: 65.1 bits (157), Expect = 4.4e-11
Identity = 29/66 (43.94%), Postives = 42/66 (63.64%), Query Frame = 1 

Query: 85  LREFVGQSQISRLGCFKYVWSYIKTNNLQDPTNKNVVICDEKLRSILLGKSKVELAELPA 144
           +++ VG  +I R    K +W+YIK ++LQDP NK  ++CDEKL+ I  GK +V   E+  
Sbjct: 78  MQDVVGVPEIPRTQALKRIWAYIKEHDLQDPQNKRDILCDEKLKKIFEGKERVGFLEIAK 137

Query: 145 LIKLHF 151
           LI  HF
Sbjct: 138 LIGPHF 143

[Close]
BLAST of CmaCh03G000230 vs. NCBI nr
Match: gi|659096818|ref|XP_008449303.1| (PREDICTED: upstream activation factor subunit spp27 [Cucumis melo])

HSP 1 Score: 185.7 bits (470), Expect = 6.3e-44
Identity = 91/100 (91.00%), Postives = 95/100 (95.00%), Query Frame = 1 

Query: 56  MLPQRMKTAITDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFKYVWSYIKTNNLQDP 115
           M  +RMK A+TDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFK VWSYIKTNNLQDP
Sbjct: 1   MTIRRMKMAMTDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFKCVWSYIKTNNLQDP 60

Query: 116 TNKNVVICDEKLRSILLGKSKVELAELPALIKLHFPKNPK 156
           TNKNVV+CDEKL+SILLGK KVELAELPALIKLHFPKNPK
Sbjct: 61  TNKNVVVCDEKLKSILLGKPKVELAELPALIKLHFPKNPK 100

[Close]
BLAST of CmaCh03G000230 vs. NCBI nr
Match: gi|700199619|gb|KGN54777.1| (hypothetical protein Csa_4G493210 [Cucumis sativus])

HSP 1 Score: 184.5 bits (467), Expect = 1.4e-43
Identity = 92/101 (91.09%), Postives = 94/101 (93.07%), Query Frame = 1 

Query: 55  KMLPQRMKTAITDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFKYVWSYIKTNNLQD 114
           KM  +RMK AITDNPKKLANLIDLVNLPSTLREFVG SQISRLGCFK VWSYIKTNNLQD
Sbjct: 92  KMATKRMKMAITDNPKKLANLIDLVNLPSTLREFVGHSQISRLGCFKCVWSYIKTNNLQD 151

Query: 115 PTNKNVVICDEKLRSILLGKSKVELAELPALIKLHFPKNPK 156
           PTNKNVVICDEKL+SILLGK KVELAELPALIKLHFPKN K
Sbjct: 152 PTNKNVVICDEKLKSILLGKPKVELAELPALIKLHFPKNSK 192

[Close]
BLAST of CmaCh03G000230 vs. NCBI nr
Match: gi|1012340959|gb|KYP52168.1| (Upstream activation factor subunit UAF30 [Cajanus cajan])

HSP 1 Score: 183.7 bits (465), Expect = 2.4e-43
Identity = 89/100 (89.00%), Postives = 94/100 (94.00%), Query Frame = 1 

Query: 56  MLPQRMKTAITDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFKYVWSYIKTNNLQDP 115
           MLPQRMK AITDNPKKLANLIDL+NLPSTLREFVGQSQISRLGCFK VWSYIKTNNLQDP
Sbjct: 1   MLPQRMKKAITDNPKKLANLIDLINLPSTLREFVGQSQISRLGCFKCVWSYIKTNNLQDP 60

Query: 116 TNKNVVICDEKLRSILLGKSKVELAELPALIKLHFPKNPK 156
            NKNVV CDEKL+SILLGK +V+LAELPALIK+HFPK PK
Sbjct: 61  NNKNVVNCDEKLKSILLGKPQVDLAELPALIKMHFPKEPK 100

[Close]
BLAST of CmaCh03G000230 vs. NCBI nr
Match: gi|778694879|ref|XP_011653889.1| (PREDICTED: upstream activation factor subunit spp27 [Cucumis sativus])

HSP 1 Score: 183.0 bits (463), Expect = 4.1e-43
Identity = 91/100 (91.00%), Postives = 93/100 (93.00%), Query Frame = 1 

Query: 56  MLPQRMKTAITDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFKYVWSYIKTNNLQDP 115
           M  +RMK AITDNPKKLANLIDLVNLPSTLREFVG SQISRLGCFK VWSYIKTNNLQDP
Sbjct: 1   MATKRMKMAITDNPKKLANLIDLVNLPSTLREFVGHSQISRLGCFKCVWSYIKTNNLQDP 60

Query: 116 TNKNVVICDEKLRSILLGKSKVELAELPALIKLHFPKNPK 156
           TNKNVVICDEKL+SILLGK KVELAELPALIKLHFPKN K
Sbjct: 61  TNKNVVICDEKLKSILLGKPKVELAELPALIKLHFPKNSK 100

[Close]
BLAST of CmaCh03G000230 vs. NCBI nr
Match: gi|351724909|ref|NP_001236050.1| (uncharacterized protein LOC100527179 [Glycine max])

HSP 1 Score: 181.8 bits (460), Expect = 9.1e-43
Identity = 89/100 (89.00%), Postives = 93/100 (93.00%), Query Frame = 1 

Query: 56  MLPQRMKTAITDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFKYVWSYIKTNNLQDP 115
           MLPQRMK AITDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFK +WSYIKTNNLQD 
Sbjct: 1   MLPQRMKKAITDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFKCIWSYIKTNNLQDQ 60

Query: 116 TNKNVVICDEKLRSILLGKSKVELAELPALIKLHFPKNPK 156
            NKNVV CDEKL+SILLGK +VELAELPALIK+HFPK PK
Sbjct: 61  NNKNVVNCDEKLKSILLGKPQVELAELPALIKMHFPKEPK 100

The following BLAST results are available for this feature:
BLAST of CmaCh03G000230 vs. Swiss-Prot
Match NameE-valueIdentityDescription
UAF30_YEAST2.1e-0735.06Upstream activation factor subunit UAF30 OS=Saccharomyces cerevisiae (strain ATC... [more]
UAF30_SCHPO2.8e-0744.23Upstream activation factor subunit spp27 OS=Schizosaccharomyces pombe (strain 97... [more]
TRI1_YEAST8.9e-0630.00Protein TRI1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TRI1 PE... [more]
BLAST of CmaCh03G000230 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L2E1_CUCSA9.8e-4491.09Uncharacterized protein OS=Cucumis sativus GN=Csa_4G493210 PE=4 SV=1[more]
A0A151SBL4_CAJCA1.7e-4389.00Upstream activation factor subunit UAF30 OS=Cajanus cajan GN=KK1_025905 PE=4 SV=... [more]
A0A0B2NVJ3_GLYSO6.4e-4389.00Upstream activation factor subunit spp27 OS=Glycine soja GN=glysoja_006364 PE=4 ... [more]
C6T3J2_SOYBN6.4e-4389.00Uncharacterized protein OS=Glycine max GN=GLYMA_08G321900 PE=2 SV=1[more]
A0A061F5T9_THECC1.9e-4288.00SWIB/MDM2 domain superfamily protein OS=Theobroma cacao GN=TCM_030796 PE=4 SV=1[more]
BLAST of CmaCh03G000230 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G26810.13.0e-4485.00 SWIB/MDM2 domain superfamily protein[more]
AT2G35605.16.6e-1540.51 SWIB/MDM2 domain superfamily protein[more]
AT3G03590.16.1e-1331.39 SWIB/MDM2 domain superfamily protein[more]
AT1G31760.18.0e-1343.48 SWIB/MDM2 domain superfamily protein[more]
AT4G34290.14.4e-1143.94 SWIB/MDM2 domain superfamily protein[more]
BLAST of CmaCh03G000230 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659096818|ref|XP_008449303.1|6.3e-4491.00PREDICTED: upstream activation factor subunit spp27 [Cucumis melo][more]
gi|700199619|gb|KGN54777.1|1.4e-4391.09hypothetical protein Csa_4G493210 [Cucumis sativus][more]
gi|1012340959|gb|KYP52168.1|2.4e-4389.00Upstream activation factor subunit UAF30 [Cajanus cajan][more]
gi|778694879|ref|XP_011653889.1|4.1e-4391.00PREDICTED: upstream activation factor subunit spp27 [Cucumis sativus][more]
gi|351724909|ref|NP_001236050.1|9.1e-4389.00uncharacterized protein LOC100527179 [Glycine max][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR003121SWIB_MDM2_domain
IPR019835SWIB_domain
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0005515 protein binding
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh03G000230.1CmaCh03G000230.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003121SWIB/MDM2 domainGENE3DG3DSA:1.10.245.10coord: 70..153
score: 7.9
IPR003121SWIB/MDM2 domainPFAMPF02201SWIBcoord: 79..150
score: 1.7
IPR003121SWIB/MDM2 domainunknownSSF47592SWIB/MDM2 domaincoord: 68..153
score: 2.29
IPR019835SWIB domainSMARTSM00151swib_2coord: 75..155
score: 5.8
NoneNo IPR availablePANTHERPTHR13844BRG-1 ASSOCIATED FACTOR 60 BAF60coord: 59..155
score: 3.8
NoneNo IPR availablePANTHERPTHR13844:SF9SUBFAMILY NOT NAMEDcoord: 59..155
score: 3.8

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmaCh03G000230Cla011684Watermelon (97103) v1cmawmB637
CmaCh03G000230Csa4G493210Cucumber (Chinese Long) v2cmacuB665
CmaCh03G000230ClCG04G002280Watermelon (Charleston Gray)cmawcgB589
CmaCh03G000230CSPI04G19900Wild cucumber (PI 183967)cmacpiB673
CmaCh03G000230CmoCh03G000240Cucurbita moschata (Rifu)cmacmoB654
CmaCh03G000230Lsi01G020710Bottle gourd (USVL1VR-Ls)cmalsiB599
CmaCh03G000230Cp4.1LG10g12520Cucurbita pepo (Zucchini)cmacpeB654
CmaCh03G000230Cla97C04G069850Watermelon (97103) v2cmawmbB688
CmaCh03G000230Bhi03G002325Wax gourdcmawgoB0796
CmaCh03G000230Carg26093Silver-seed gourdcarcmaB0725
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh03G000230Cucurbita pepo (Zucchini)cmacpeB656
CmaCh03G000230Cucurbita pepo (Zucchini)cmacpeB669
CmaCh03G000230Cucumber (Gy14) v2cgybcmaB530
CmaCh03G000230Melon (DHL92) v3.6.1cmamedB700
CmaCh03G000230Melon (DHL92) v3.6.1cmamedB706
CmaCh03G000230Silver-seed gourdcarcmaB0661
CmaCh03G000230Cucumber (Chinese Long) v3cmacucB0793
CmaCh03G000230Watermelon (97103) v2cmawmbB693
CmaCh03G000230Cucurbita maxima (Rimu)cmacmaB530
CmaCh03G000230Cucurbita moschata (Rifu)cmacmoB674
CmaCh03G000230Wild cucumber (PI 183967)cmacpiB676
CmaCh03G000230Cucumber (Chinese Long) v2cmacuB672
CmaCh03G000230Melon (DHL92) v3.5.1cmameB614
CmaCh03G000230Melon (DHL92) v3.5.1cmameB620
CmaCh03G000230Watermelon (Charleston Gray)cmawcgB594
CmaCh03G000230Watermelon (97103) v1cmawmB643