CmoCh03G000240 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh03G000240
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionSWIB/MDM2 domain superfamily protein
LocationCmo_Chr03 : 577446 .. 580193 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CTCCAAGTTCTCCTTCCCCTTGGTGATCCGACCCTAATTCGCTTTAGCCGCTGTATTTCTGTCAATTCTTTCCAATTTCTAGAGGTTTTTCTTCTCCCTTTTCCCAGGTGCGAATTAAAGCTATCTATTCCATGAACTCGATTTCCTTGCTTCTTGATTTTTTCATTCTCTGAACTGGGTTTCTTGATTTGAACTCGCGGTACTTCATTTCTCTTGATTTCCCGAGAAATTTCGTGTTCTGTTTCACTCTCTGTGATTGAAAATCTATTGCACATAAGATGTTTGATAAAATTCCCTTGAACCGATGCTCAGATTTTGCTTAGGAGGTTTTGGTTATTGAATGAGCTTATCGCGCCTCAATTTGCAGGACTTTCTGTGTTTTTCATATTTCCAAAGCTTCGTTTCATCTTCCGAGTAAACAGTTTTTATGTGTTTTTCCAGTGGAGGTGGAAGCGAACTAGTTGTGCAGAAAAAATGTTGCCGCAACGGATGAAGACGGCCATTACAGATAACCCGAAGAAGCTTGCTAACTTGATTGATCTCGTAAACCTTCCTTCAACTCTCAGGGAGTTTGTGGGACAGTCCCAAATTTCTCGTCTGGGCTGTTTCAAGTATGTGTGGTCATATATCAAAACCAATAATCTTCAGGTTCTATTCTTTGTCTAATTTTTATGGCCTTTTTTTTTTATTATTAGTTTTAGATGCATTTTGATTATACTGCTATCAACCTATAACAGAGACTTCCCTTGTTAAATCTACTTTCAAAAATAGTTTTCATAGATTCTATATTGTATTCTGGTTGAAGTATGGCTTAAAATGGGCAAGAGGCTAAGGAACGAAACGAAAAGAGTAATCAAAGAGGAGAAGAAAGGTCATGAATCTGAATAATCAGGATGATAAAGAATATCTTGAAATGAAAGTTATGAGAACCTGATGGAGGGTCAAGATCCTTGGAACGTCCCTAGGTTTGAATAATCAAATACGTGACGGTCCTTGAAACGTTGCATCACGTATACCTTGAAACTAGATTATGAGAACCTGATGTACAGGACATAATCTAGGTTCTCAAGTATACGTGACAGTTCTTGGTCCTTGGAACGTCCCTAGGTTTGAATAATCAAATATGTGACAGTCCTTGGAACGTCACGCCACGTCATGTATACTTTGAAACTAGATTATGAGAACCTGATGTACATGACATAATCTAGGTTCTTAAGTATACGCACGTCACATATACTTTGAAACTGTATAGAAGAGCTACAAGATAACTCAAGTATTCGAGGTACTTGGAACGTTCCTAGATTTGAATATACACACTCGAGCCTAAACCATCTGAACAGTTCTCTACCTTCATCGTTTACCACTCACTGGATTTGTAACAAATCCCCCCAACAATTCACCCAAACAATATTAACTACTCCCGTGGGATTCTTATCAAAGAAGAGATCCCAAACGAATTGGCTTCTTCGAAAAAAACCTTGTTCGTTGGAAGATCTATCTCGTGCCTGGTACTGTATGGTTCCACTCTAGAAGAACTCCGAATCAATCTCTTGAAGCTCATCCTCTTAAAAGCCCCAAGGGCACCATATTCTAGGAGCTCAAACGATGTGATTGAATAAATCCTCCTTTATCTGTTGCAGGTCGAGGACTCCTTCTCCTTCCCCTTCTTCAAACTCCGATTCATATTGTTCAATCAGAGGGTCACAGAAGGAATGTGATCTTTGATTTATTACCCCAGGGAAGACATAACTAGGTCATAGGCAACATAGAGGAGCTCATAACCCACCACATGAACCCATCTTTCAAGCTTTACTGACTCGATGCTAATACCAACCAACAAAAATTTCGTCTTACTTTACCTATCAAGTTCTATTTAGGCCCACAAAGGACTCCATTAAGCATAAGGAAATAGTATTATAAACTGTAAATGAGTAAGATGGGTGATTTTTTCTCTCTCCCAACAAACATTCCTTCTGCTAACCTTTATCCATGCCTCTCAAAATAAGTCTGTTAAGCACATCCACGAGCACCCCAAAAGAGAATGATGCTTAGAATGATGCTTGATTTTACAAACGAGGAATACATCTCTATCGGTACAAGACCTTTTGGGAGAAACCAAAAGCAAAGCCGCAAAGCCGCGAGAGCTTATGCTCAAAGTGGACAATATCATACCATTGTGAAGAGTCGTGGTTCCTAACATTTGCATTACACGTTATTATTGTTCCATGGTCATGTATTATGATTTTGGGAAGCTAGAAGTACTTGAAACTTGAATGAAGTAGCACTTCTTTTTCTAAATGTTAAAAATATGTTTCTTGGTATGTATCTTTCTTGTCCAGGATCCAACCAACAAGAATGTGGTCATTTGTGATGAGAAGTTAAAGAGTATATTGCTAGGCAAGTCCAAGATTGAGCTAGCCGAACTTCCCGCGCTGATTAAATTACATTTTCCAAAGAACCCCAAGTGAGTTACGCTTGCAGTTTAACCTCTGCCACATCCAGAATGACCTCTTCAATGTTTAGCCTCAATTTTGTATGAATCTCCTTCTAGGTTTCTTTTATATATATGACTCTTCTTGTACCTCATGCCTTATGCTTTGTTATACGTTTTATGCTTTGTTATACGTTTTATTTTATCAAGTTGTAACAACTCAAGTCCACTGCTAGCAAATATTGTCCTCTTTGGATTTTTCCTTCTGGGCATCCCTTCAAAGTTTTAAAATGTGTCTACTAGAAAGATGTTTCTAC

mRNA sequence

CTCCAAGTTCTCCTTCCCCTTGGTGATCCGACCCTAATTCGCTTTAGCCGCTGTATTTCTGTCAATTCTTTCCAATTTCTAGAGGTTTTTCTTCTCCCTTTTCCCAGGACTTTCTGTGTTTTTCATATTTCCAAAGCTTCGTTTCATCTTCCGAGTAAACAGTTTTTATGTGTTTTTCCAGTGGAGGTGGAAGCGAACTAGTTGTGCAGAAAAAATGTTGCCGCAACGGATGAAGACGGCCATTACAGATAACCCGAAGAAGCTTGCTAACTTGATTGATCTCGTAAACCTTCCTTCAACTCTCAGGGAGTTTGTGGGACAGTCCCAAATTTCTCGTCTGGGCTGTTTCAAGTATGTGTGGTCATATATCAAAACCAATAATCTTCAGGATCCAACCAACAAGAATGTGGTCATTTGTGATGAGAAGTTAAAGAGTATATTGCTAGGCAAGTCCAAGATTGAGCTAGCCGAACTTCCCGCGCTGATTAAATTACATTTTCCAAAGAACCCCAAGTGAGTTACGCTTGCAGTTTAACCTCTGCCACATCCAGAATGACCTCTTCAATGTTTAGCCTCAATTTTGTATGAATCTCCTTCTAGGTTTCTTTTATATATATGACTCTTCTTGTACCTCATGCCTTATGCTTTGTTATACGTTTTATGCTTTGTTATACGTTTTATTTTATCAAGTTGTAACAACTCAAGTCCACTGCTAGCAAATATTGTCCTCTTTGGATTTTTCCTTCTGGGCATCCCTTCAAAGTTTTAAAATGTGTCTACTAGAAAGATGTTTCTAC

Coding sequence (CDS)

ATGTTGCCGCAACGGATGAAGACGGCCATTACAGATAACCCGAAGAAGCTTGCTAACTTGATTGATCTCGTAAACCTTCCTTCAACTCTCAGGGAGTTTGTGGGACAGTCCCAAATTTCTCGTCTGGGCTGTTTCAAGTATGTGTGGTCATATATCAAAACCAATAATCTTCAGGATCCAACCAACAAGAATGTGGTCATTTGTGATGAGAAGTTAAAGAGTATATTGCTAGGCAAGTCCAAGATTGAGCTAGCCGAACTTCCCGCGCTGATTAAATTACATTTTCCAAAGAACCCCAAGTGA
Homology
[Close]
BLAST of CmoCh03G000240 vs. Swiss-Prot
Match: UAF30_SCHPO (Upstream activation factor subunit spp27 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=spp27 PE=1 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 1.1e-07
Identity = 24/52 (46.15%), Postives = 35/52 (67.31%), Query Frame = 1 

Query: 24  VNLPSTLREFVGQSQISRLGCFKYVWSYIKTNNLQDPTNKNVVICDEKLKSI 76
           + L   L EF+G  Q+SR    K +W YIK ++LQDP +K  ++CD+KLKS+
Sbjct: 121 MKLSPKLAEFLGLEQLSRPQTVKKLWEYIKAHDLQDPNDKRTILCDDKLKSV 172

[Close]
BLAST of CmoCh03G000240 vs. Swiss-Prot
Match: UAF30_YEAST (Upstream activation factor subunit UAF30 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=UAF30 PE=1 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 1.8e-07
Identity = 27/77 (35.06%), Postives = 48/77 (62.34%), Query Frame = 1 

Query: 24  VNLPSTLREFVGQSQISRLGCFKYVWSYIKTNNLQDPTNKNVVICDEKLKSILLGKSKIE 83
           V L  +L   +G+ +++R    + +W+YIK +NLQ+P NK  ++CDEKL+ ++LGKS   
Sbjct: 124 VTLSKSLASLLGEHELTRTEVVRRLWAYIKAHNLQNPNNKKEILCDEKLE-LILGKS-TN 183

Query: 84  LAELPALIKLHFPKNPK 101
           + E+  ++  H  +  K
Sbjct: 184 MFEMHKILASHMTEPKK 198

[Close]
BLAST of CmoCh03G000240 vs. Swiss-Prot
Match: TRI1_YEAST (Protein TRI1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TRI1 PE=1 SV=1)

HSP 1 Score: 52.0 bits (123), Expect = 4.4e-06
Identity = 27/90 (30.00%), Postives = 51/90 (56.67%), Query Frame = 1 

Query: 5   RMKTAITDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFKYVWSYIKTNNLQDPTNKN 64
           + K    D+P   +  +  V L + L++F+G  ++ R    K +W YIK ++LQ+P ++ 
Sbjct: 105 KRKKKKNDSPDSNSISVRKVLLSAPLQKFLGSEELPRTQVVKMIWQYIKEHDLQNPKDRR 164

Query: 65  VVICDEKLKSILLGKSKIELAELPALIKLH 95
            ++CDEK++ I  GK K+ +  +  L+  H
Sbjct: 165 EILCDEKMEPI-FGK-KMTMFSMNKLLTKH 192

[Close]
BLAST of CmoCh03G000240 vs. TrEMBL
Match: A0A151SBL4_CAJCA (Upstream activation factor subunit UAF30 OS=Cajanus cajan GN=KK1_025905 PE=4 SV=1)

HSP 1 Score: 184.1 bits (466), Expect = 8.3e-44
Identity = 89/100 (89.00%), Postives = 94/100 (94.00%), Query Frame = 1 

Query: 1   MLPQRMKTAITDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFKYVWSYIKTNNLQDP 60
           MLPQRMK AITDNPKKLANLIDL+NLPSTLREFVGQSQISRLGCFK VWSYIKTNNLQDP
Sbjct: 1   MLPQRMKKAITDNPKKLANLIDLINLPSTLREFVGQSQISRLGCFKCVWSYIKTNNLQDP 60

Query: 61  TNKNVVICDEKLKSILLGKSKIELAELPALIKLHFPKNPK 101
            NKNVV CDEKLKSILLGK +++LAELPALIK+HFPK PK
Sbjct: 61  NNKNVVNCDEKLKSILLGKPQVDLAELPALIKMHFPKEPK 100

[Close]
BLAST of CmoCh03G000240 vs. TrEMBL
Match: A0A0A0L2E1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G493210 PE=4 SV=1)

HSP 1 Score: 183.3 bits (464), Expect = 1.4e-43
Identity = 91/100 (91.00%), Postives = 93/100 (93.00%), Query Frame = 1 

Query: 1   MLPQRMKTAITDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFKYVWSYIKTNNLQDP 60
           M  +RMK AITDNPKKLANLIDLVNLPSTLREFVG SQISRLGCFK VWSYIKTNNLQDP
Sbjct: 93  MATKRMKMAITDNPKKLANLIDLVNLPSTLREFVGHSQISRLGCFKCVWSYIKTNNLQDP 152

Query: 61  TNKNVVICDEKLKSILLGKSKIELAELPALIKLHFPKNPK 101
           TNKNVVICDEKLKSILLGK K+ELAELPALIKLHFPKN K
Sbjct: 153 TNKNVVICDEKLKSILLGKPKVELAELPALIKLHFPKNSK 192

[Close]
BLAST of CmoCh03G000240 vs. TrEMBL
Match: A0A0B2NVJ3_GLYSO (Upstream activation factor subunit spp27 OS=Glycine soja GN=glysoja_006364 PE=4 SV=1)

HSP 1 Score: 182.2 bits (461), Expect = 3.1e-43
Identity = 89/100 (89.00%), Postives = 93/100 (93.00%), Query Frame = 1 

Query: 1   MLPQRMKTAITDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFKYVWSYIKTNNLQDP 60
           MLPQRMK AITDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFK +WSYIKTNNLQD 
Sbjct: 1   MLPQRMKKAITDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFKCIWSYIKTNNLQDQ 60

Query: 61  TNKNVVICDEKLKSILLGKSKIELAELPALIKLHFPKNPK 101
            NKNVV CDEKLKSILLGK ++ELAELPALIK+HFPK PK
Sbjct: 61  NNKNVVNCDEKLKSILLGKPQVELAELPALIKMHFPKEPK 100

[Close]
BLAST of CmoCh03G000240 vs. TrEMBL
Match: C6T3J2_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_08G321900 PE=2 SV=1)

HSP 1 Score: 182.2 bits (461), Expect = 3.1e-43
Identity = 89/100 (89.00%), Postives = 93/100 (93.00%), Query Frame = 1 

Query: 1   MLPQRMKTAITDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFKYVWSYIKTNNLQDP 60
           MLPQRMK AITDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFK +WSYIKTNNLQD 
Sbjct: 1   MLPQRMKKAITDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFKCIWSYIKTNNLQDQ 60

Query: 61  TNKNVVICDEKLKSILLGKSKIELAELPALIKLHFPKNPK 101
            NKNVV CDEKLKSILLGK ++ELAELPALIK+HFPK PK
Sbjct: 61  NNKNVVNCDEKLKSILLGKPQVELAELPALIKMHFPKEPK 100

[Close]
BLAST of CmoCh03G000240 vs. TrEMBL
Match: I1N0J4_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_18G090500 PE=4 SV=1)

HSP 1 Score: 180.3 bits (456), Expect = 1.2e-42
Identity = 89/100 (89.00%), Postives = 92/100 (92.00%), Query Frame = 1 

Query: 1   MLPQRMKTAITDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFKYVWSYIKTNNLQDP 60
           MLPQRMK AITDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFK VW YIKTNNLQD 
Sbjct: 1   MLPQRMKKAITDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFKCVWFYIKTNNLQDQ 60

Query: 61  TNKNVVICDEKLKSILLGKSKIELAELPALIKLHFPKNPK 101
            NKNVV CDEKLKSILLGK ++ELAELPALIK+HFPK PK
Sbjct: 61  NNKNVVNCDEKLKSILLGKPQVELAELPALIKMHFPKEPK 100

[Close]
BLAST of CmoCh03G000240 vs. TAIR10
Match: AT4G26810.1 (AT4G26810.1 SWIB/MDM2 domain superfamily protein)

HSP 1 Score: 175.6 bits (444), Expect = 1.5e-44
Identity = 85/100 (85.00%), Postives = 90/100 (90.00%), Query Frame = 1 

Query: 1   MLPQRMKTAITDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFKYVWSYIKTNNLQDP 60
           MLPQR+K AITDNPKKL NLIDLVNLPSTLR FVGQSQISRLGCF  VWSYIKTNNLQDP
Sbjct: 1   MLPQRLKKAITDNPKKLGNLIDLVNLPSTLRNFVGQSQISRLGCFMRVWSYIKTNNLQDP 60

Query: 61  TNKNVVICDEKLKSILLGKSKIELAELPALIKLHFPKNPK 101
            NKNVVICDEKLKSILLGK ++EL +LP+LIKLHFPK  K
Sbjct: 61  KNKNVVICDEKLKSILLGKQRVELVDLPSLIKLHFPKEQK 100

[Close]
BLAST of CmoCh03G000240 vs. TAIR10
Match: AT2G35605.1 (AT2G35605.1 SWIB/MDM2 domain superfamily protein)

HSP 1 Score: 78.2 bits (191), Expect = 3.2e-15
Identity = 32/79 (40.51%), Postives = 51/79 (64.56%), Query Frame = 1 

Query: 20  LIDLVNLPSTLREFVGQSQISRLGCFKYVWSYIKTNNLQDPTNKNVVICDEKLKSILLGK 79
           ++ +V +   L  F+G++++SR    K +W YIK NNLQ+P NK  ++CDE+LK+I  GK
Sbjct: 30  ILKVVPVSKPLANFIGENEVSRTTAVKKIWEYIKLNNLQNPVNKREILCDEQLKTIFSGK 89

Query: 80  SKIELAELPALIKLHFPKN 99
             +   E+  L+  HFPK+
Sbjct: 90  DTVGFLEISKLLSQHFPKS 108

[Close]
BLAST of CmoCh03G000240 vs. TAIR10
Match: AT1G31760.1 (AT1G31760.1 SWIB/MDM2 domain superfamily protein)

HSP 1 Score: 71.2 bits (173), Expect = 4.0e-13
Identity = 30/69 (43.48%), Postives = 45/69 (65.22%), Query Frame = 1 

Query: 30  LREFVGQSQISRLGCFKYVWSYIKTNNLQDPTNKNVVICDEKLKSILLGKSKIELAELPA 89
           L  F G+ +++R    K VW Y+K +NLQ+P NK  + CD+KLK+I  GK K+ + E+  
Sbjct: 43  LASFAGERELTRGSALKKVWEYVKLHNLQNPANKKEIHCDDKLKTIFDGKDKVGITEIMK 102

Query: 90  LIKLHFPKN 99
           L+  HFPK+
Sbjct: 103 LLSPHFPKS 111

[Close]
BLAST of CmoCh03G000240 vs. TAIR10
Match: AT4G34290.1 (AT4G34290.1 SWIB/MDM2 domain superfamily protein)

HSP 1 Score: 65.5 bits (158), Expect = 2.2e-11
Identity = 29/66 (43.94%), Postives = 42/66 (63.64%), Query Frame = 1 

Query: 30  LREFVGQSQISRLGCFKYVWSYIKTNNLQDPTNKNVVICDEKLKSILLGKSKIELAELPA 89
           +++ VG  +I R    K +W+YIK ++LQDP NK  ++CDEKLK I  GK ++   E+  
Sbjct: 78  MQDVVGVPEIPRTQALKRIWAYIKEHDLQDPQNKRDILCDEKLKKIFEGKERVGFLEIAK 137

Query: 90  LIKLHF 96
           LI  HF
Sbjct: 138 LIGPHF 143

[Close]
BLAST of CmoCh03G000240 vs. TAIR10
Match: AT3G03590.1 (AT3G03590.1 SWIB/MDM2 domain superfamily protein)

HSP 1 Score: 64.7 bits (156), Expect = 3.7e-11
Identity = 32/93 (34.41%), Postives = 51/93 (54.84%), Query Frame = 1 

Query: 9   AITDNPKKLA----NLIDLVNLPSTLREFVGQSQISRLGCFKYVWSYIKTNNLQDPTNKN 68
           A +D+P K       +  +  +   L +F+G  + SR    K +W+YIK+++LQ+P +K 
Sbjct: 49  AKSDSPAKKTPRSTGIFKVTPVSPVLAQFLGTGETSRTDAIKGIWTYIKSHDLQNPADKR 108

Query: 69  VVICDEKLKSILLGKSKIELAELPALIKLHFPK 98
            + CDE LK I  GK K+   E+  L+  HF K
Sbjct: 109 EIFCDETLKLIFEGKDKVGFLEISKLLSPHFVK 141

[Close]
BLAST of CmoCh03G000240 vs. NCBI nr
Match: gi|659096818|ref|XP_008449303.1| (PREDICTED: upstream activation factor subunit spp27 [Cucumis melo])

HSP 1 Score: 186.0 bits (471), Expect = 3.1e-44
Identity = 91/100 (91.00%), Postives = 95/100 (95.00%), Query Frame = 1 

Query: 1   MLPQRMKTAITDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFKYVWSYIKTNNLQDP 60
           M  +RMK A+TDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFK VWSYIKTNNLQDP
Sbjct: 1   MTIRRMKMAMTDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFKCVWSYIKTNNLQDP 60

Query: 61  TNKNVVICDEKLKSILLGKSKIELAELPALIKLHFPKNPK 101
           TNKNVV+CDEKLKSILLGK K+ELAELPALIKLHFPKNPK
Sbjct: 61  TNKNVVVCDEKLKSILLGKPKVELAELPALIKLHFPKNPK 100

[Close]
BLAST of CmoCh03G000240 vs. NCBI nr
Match: gi|1012340959|gb|KYP52168.1| (Upstream activation factor subunit UAF30 [Cajanus cajan])

HSP 1 Score: 184.1 bits (466), Expect = 1.2e-43
Identity = 89/100 (89.00%), Postives = 94/100 (94.00%), Query Frame = 1 

Query: 1   MLPQRMKTAITDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFKYVWSYIKTNNLQDP 60
           MLPQRMK AITDNPKKLANLIDL+NLPSTLREFVGQSQISRLGCFK VWSYIKTNNLQDP
Sbjct: 1   MLPQRMKKAITDNPKKLANLIDLINLPSTLREFVGQSQISRLGCFKCVWSYIKTNNLQDP 60

Query: 61  TNKNVVICDEKLKSILLGKSKIELAELPALIKLHFPKNPK 101
            NKNVV CDEKLKSILLGK +++LAELPALIK+HFPK PK
Sbjct: 61  NNKNVVNCDEKLKSILLGKPQVDLAELPALIKMHFPKEPK 100

[Close]
BLAST of CmoCh03G000240 vs. NCBI nr
Match: gi|778694879|ref|XP_011653889.1| (PREDICTED: upstream activation factor subunit spp27 [Cucumis sativus])

HSP 1 Score: 183.3 bits (464), Expect = 2.0e-43
Identity = 91/100 (91.00%), Postives = 93/100 (93.00%), Query Frame = 1 

Query: 1   MLPQRMKTAITDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFKYVWSYIKTNNLQDP 60
           M  +RMK AITDNPKKLANLIDLVNLPSTLREFVG SQISRLGCFK VWSYIKTNNLQDP
Sbjct: 1   MATKRMKMAITDNPKKLANLIDLVNLPSTLREFVGHSQISRLGCFKCVWSYIKTNNLQDP 60

Query: 61  TNKNVVICDEKLKSILLGKSKIELAELPALIKLHFPKNPK 101
           TNKNVVICDEKLKSILLGK K+ELAELPALIKLHFPKN K
Sbjct: 61  TNKNVVICDEKLKSILLGKPKVELAELPALIKLHFPKNSK 100

[Close]
BLAST of CmoCh03G000240 vs. NCBI nr
Match: gi|700199619|gb|KGN54777.1| (hypothetical protein Csa_4G493210 [Cucumis sativus])

HSP 1 Score: 183.3 bits (464), Expect = 2.0e-43
Identity = 91/100 (91.00%), Postives = 93/100 (93.00%), Query Frame = 1 

Query: 1   MLPQRMKTAITDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFKYVWSYIKTNNLQDP 60
           M  +RMK AITDNPKKLANLIDLVNLPSTLREFVG SQISRLGCFK VWSYIKTNNLQDP
Sbjct: 93  MATKRMKMAITDNPKKLANLIDLVNLPSTLREFVGHSQISRLGCFKCVWSYIKTNNLQDP 152

Query: 61  TNKNVVICDEKLKSILLGKSKIELAELPALIKLHFPKNPK 101
           TNKNVVICDEKLKSILLGK K+ELAELPALIKLHFPKN K
Sbjct: 153 TNKNVVICDEKLKSILLGKPKVELAELPALIKLHFPKNSK 192

[Close]
BLAST of CmoCh03G000240 vs. NCBI nr
Match: gi|351724909|ref|NP_001236050.1| (uncharacterized protein LOC100527179 [Glycine max])

HSP 1 Score: 182.2 bits (461), Expect = 4.5e-43
Identity = 89/100 (89.00%), Postives = 93/100 (93.00%), Query Frame = 1 

Query: 1   MLPQRMKTAITDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFKYVWSYIKTNNLQDP 60
           MLPQRMK AITDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFK +WSYIKTNNLQD 
Sbjct: 1   MLPQRMKKAITDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFKCIWSYIKTNNLQDQ 60

Query: 61  TNKNVVICDEKLKSILLGKSKIELAELPALIKLHFPKNPK 101
            NKNVV CDEKLKSILLGK ++ELAELPALIK+HFPK PK
Sbjct: 61  NNKNVVNCDEKLKSILLGKPQVELAELPALIKMHFPKEPK 100

The following BLAST results are available for this feature:
BLAST of CmoCh03G000240 vs. Swiss-Prot
Match NameE-valueIdentityDescription
UAF30_SCHPO1.1e-0746.15Upstream activation factor subunit spp27 OS=Schizosaccharomyces pombe (strain 97... [more]
UAF30_YEAST1.8e-0735.06Upstream activation factor subunit UAF30 OS=Saccharomyces cerevisiae (strain ATC... [more]
TRI1_YEAST4.4e-0630.00Protein TRI1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TRI1 PE... [more]
BLAST of CmoCh03G000240 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A151SBL4_CAJCA8.3e-4489.00Upstream activation factor subunit UAF30 OS=Cajanus cajan GN=KK1_025905 PE=4 SV=... [more]
A0A0A0L2E1_CUCSA1.4e-4391.00Uncharacterized protein OS=Cucumis sativus GN=Csa_4G493210 PE=4 SV=1[more]
A0A0B2NVJ3_GLYSO3.1e-4389.00Upstream activation factor subunit spp27 OS=Glycine soja GN=glysoja_006364 PE=4 ... [more]
C6T3J2_SOYBN3.1e-4389.00Uncharacterized protein OS=Glycine max GN=GLYMA_08G321900 PE=2 SV=1[more]
I1N0J4_SOYBN1.2e-4289.00Uncharacterized protein OS=Glycine max GN=GLYMA_18G090500 PE=4 SV=1[more]
BLAST of CmoCh03G000240 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G26810.11.5e-4485.00 SWIB/MDM2 domain superfamily protein[more]
AT2G35605.13.2e-1540.51 SWIB/MDM2 domain superfamily protein[more]
AT1G31760.14.0e-1343.48 SWIB/MDM2 domain superfamily protein[more]
AT4G34290.12.2e-1143.94 SWIB/MDM2 domain superfamily protein[more]
AT3G03590.13.7e-1134.41 SWIB/MDM2 domain superfamily protein[more]
BLAST of CmoCh03G000240 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659096818|ref|XP_008449303.1|3.1e-4491.00PREDICTED: upstream activation factor subunit spp27 [Cucumis melo][more]
gi|1012340959|gb|KYP52168.1|1.2e-4389.00Upstream activation factor subunit UAF30 [Cajanus cajan][more]
gi|778694879|ref|XP_011653889.1|2.0e-4391.00PREDICTED: upstream activation factor subunit spp27 [Cucumis sativus][more]
gi|700199619|gb|KGN54777.1|2.0e-4391.00hypothetical protein Csa_4G493210 [Cucumis sativus][more]
gi|351724909|ref|NP_001236050.1|4.5e-4389.00uncharacterized protein LOC100527179 [Glycine max][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR003121SWIB_MDM2_domain
IPR019835SWIB_domain
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0005515 protein binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh03G000240.1CmoCh03G000240.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003121SWIB/MDM2 domainGENE3DG3DSA:1.10.245.10coord: 15..98
score: 2.7
IPR003121SWIB/MDM2 domainPFAMPF02201SWIBcoord: 24..95
score: 5.1
IPR003121SWIB/MDM2 domainunknownSSF47592SWIB/MDM2 domaincoord: 13..98
score: 7.19
IPR019835SWIB domainSMARTSM00151swib_2coord: 20..100
score: 2.3
NoneNo IPR availablePANTHERPTHR13844BRG-1 ASSOCIATED FACTOR 60 BAF60coord: 4..100
score: 6.3
NoneNo IPR availablePANTHERPTHR13844:SF9SUBFAMILY NOT NAMEDcoord: 4..100
score: 6.3

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh03G000240CmaCh03G000230Cucurbita maxima (Rimu)cmacmoB654
CmoCh03G000240Cla011684Watermelon (97103) v1cmowmB631
CmoCh03G000240ClCG04G002280Watermelon (Charleston Gray)cmowcgB588
CmoCh03G000240CSPI04G19900Wild cucumber (PI 183967)cmocpiB667
CmoCh03G000240Lsi01G020710Bottle gourd (USVL1VR-Ls)cmolsiB585
CmoCh03G000240Cp4.1LG10g12520Cucurbita pepo (Zucchini)cmocpeB604
CmoCh03G000240Cla97C04G069850Watermelon (97103) v2cmowmbB661
CmoCh03G000240Bhi03G002325Wax gourdcmowgoB0789
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh03G000240Cucurbita pepo (Zucchini)cmocpeB606
CmoCh03G000240Cucurbita pepo (Zucchini)cmocpeB620
CmoCh03G000240Bottle gourd (USVL1VR-Ls)cmolsiB589
CmoCh03G000240Cucumber (Gy14) v2cgybcmoB504
CmoCh03G000240Melon (DHL92) v3.6.1cmomedB701
CmoCh03G000240Silver-seed gourdcarcmoB0643
CmoCh03G000240Cucumber (Chinese Long) v3cmocucB0778
CmoCh03G000240Wax gourdcmowgoB0801
CmoCh03G000240Cucurbita moschata (Rifu)cmocmoB461
CmoCh03G000240Cucurbita maxima (Rimu)cmacmoB863
CmoCh03G000240Cucumber (Chinese Long) v2cmocuB663
CmoCh03G000240Melon (DHL92) v3.5.1cmomeB612