Bhi03G002325 (gene) Wax gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Bhi03G002325
Type	gene
Organism	Benincasa hispida (Wax gourd)
Description	Upstream activation factor subunit like
Location	chr3 : 71975159 .. 71977554 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TGCTAATGCACTCGAAGTTGCAAAAAATTCGAGCGCTAAGCCATAGACGCGCTACAAAACTGATCTTCCTTTTTTCATTCCGGGCCCTAATTCGCTTTCATCCCTCTAGTCTCTGTTTAACTCTTTCCAATTCCTACAGGTTTTTCTTCTCCCTTTTCAATCTATTCCATGCTTTCGATTTCTTTGCCTGTAATTTTCTCTTGATTTTCGGAGGATCTGCGTAGTCTGTACAACTCTTTGTGATTGAAACTTCATTGCACGCAAGTTGTTTGATAAAATTCCCAAGAATCGATGCCCAGGTCTTGTGCAGGGCTTTCTGTTTTTCATTTTTTTTTTTAAACTTCATTCAACGGCTGAGTAAACGATTTTTATGTTATTTTTCAGTGGAGGAGGAAGTAAACTAGTTGTGCAGAAAAATGCTTCCAAAACGGATGAAGATGGCCATTACAGATAACCCAAAGAAGCTTGCCAACTTGATTGATCTCGTAAATCTTCCTTCAACTCTCAGGGAGTTTGTGGGCCAGTCCCAAATTTCTCGTCTAGGCTGTTTCAAGTGTGTGTGGTCATATATCAAAACCAACAATCTTCAGGTTCTTTTTTTTTTTTTTTTTTTCTTTTTTTTAGATGCATATTGATTTTGCTGCTATCAACCTGACAGAGACCTCCCTTATTTAATCTACTTCCAAATATCTGTTGTAGATTCTACGTTTTGTGCTGGTTAAATTATAGATTAAAAATGGGGAACAGGGTAGGAGAAGATTGATCATATGTTTGAATACTCAAGATGAAAGTTATGAGAAACTGATGGTGGGTCAAGGTCGAAGACAAAATACACTCAATAGAACCATCTTTTTGCAAGGTAAAATTGTATGAGAAAGAGGTTACAAAGAGAGTCTGATAGAACCCAAATAGAACTAGAATGATACTGAAACGTAAAAGAGAGAACAGTTACAAGATAACTCAAGTATTCAAGGTACTTGGAAGTTTGGAACGTCGTCCCCGACTCAAGTCAAAACCATAGAAACTATCTGAGCAATTCTCTACTTTCATCCTTTAGCACTCACCTTATCTGTAACTAATCCCCCCAACAGTATGTTCTAATAATATTCCTAACTACTCCTTGTTGCATTGCTATAGAAGATGAGATCCTCTGAACAATTTTTCAACCATAGGGTCACACCCGTATGAACCCATCTCTCAAGCTTGTCTGCCTTACCACAAATGCCAATAACAAATATTTTTTCTTATTAAATAAGACCAAACCTATGAAGTCCTATTAAGGCTCCCAAAGGACAACCTCTCCTTATGCATAAGGAAATACTTAAATTGTATTATAAACTAAAAATGAGTAAGATGGACGATTTTTGTCCCTCCCAGCAAGCAACCCTTCTACTAAACCTTTATCCATGCCTCTCAAAAAAAAAAAAAAAATAGTTCTTGATTTTACTTGTAAAATAGCCTTTTGATTTTTGCACCAGTTTGCGGTACACTTTATGACTCTCCAAATGTCATATGATATGATCTTGGGAAGCTAGAAGTACTTGAAACTTTAATGAAGGAGCACTTCTTTTGACTTAAGTGTTATAAATATGTTTCTGCTGATCTATAAGTAGCTTTCTTTATTCTGATAAAAGGTCATGGATATGTATTTTTCTTGTCTAGGATCCTACCAACAAGAATGTGGTCATTTGTGATGAGAAGTTAAAGAGTATATTGCTAGGCAAGCCCAAGGTTGAGTTAGCCGAACTTCCTGCACTGATTAAATTACATTTTCCCAAAAATCCCAAGTGAGTTATACTTGTAGTTTAACCTCTGGCAGCTCCAGAGTGACATCTTCACATCGCCAATGCTTAGAATGTTTAGCCTCAATTTTGTATAACTGTCCTACTAGGTCTCTTTCTCAAATATTGTCGGGAAATTATTTGACTTAACTCTCTTTTTGTGCCTCATGTCCTTTTGTATATTATATTTGGCTTCACTTGACATTTTATAATTTTTAAATTTTTGTGCATTGTTCTCAATTAACATGGAATTGATTGGAACTTTTGTACACATATGATGGAACTTTAACAAAAGTTCGAACTTGATCCAAAACTTTTATAATGGAAACAAAAGAGAAGCAGCAAAGCGAATGAGGTGAAACATAATTAAACAATGTTCATCCAATCTTTGGTTCCTATGCATCATATCGTTTCACTCTCATTTGCAATCTCTTCTTTGTTCCCTCTCACTACTGCTCTGTACTGCTATACTGCAATTCATCAATATCATATGGAGCTGTAATTAGCTCGTTGAAAGGAAAATAATTACATTTCAATTGCCAAAATCATTTGGAATTGAACACGGTTTATTTGACTTTTGCTACAAACAATGTTTGATACATTTGTGTGTTCTGC

mRNA sequence

TGCTAATGCACTCGAAGTTGCAAAAAATTCGAGCGCTAAGCCATAGACGCGCTACAAAACTGATCTTCCTTTTTTCATTCCGGGCCCTAATTCGCTTTCATCCCTCTAGTCTCTGTTTAACTCTTTCCAATTCCTACAGGTTTTTCTTCTCCCTTTTCAATCTATTCCATGCTTTCGATTTCTTTGCCTGTAATTTTCTCTTGATTTTCGGAGGATCTGCGTAGTCTGTACAACTCTTTGTGATTGAAACTTCATTGCACGCAAGTTGTTTGATAAAATTCCCAAGAATCGATGCCCAGTGGAGGAGGAAGTAAACTAGTTGTGCAGAAAAATGCTTCCAAAACGGATGAAGATGGCCATTACAGATAACCCAAAGAAGCTTGCCAACTTGATTGATCTCGTAAATCTTCCTTCAACTCTCAGGGAGTTTGTGGGCCAGTCCCAAATTTCTCGTCTAGGCTGTTTCAAGTGTGTGTGGTCATATATCAAAACCAACAATCTTCAGGATCCTACCAACAAGAATGTGGTCATTTGTGATGAGAAGTTAAAGAGTATATTGCTAGGCAAGCCCAAGGTTGAGTTAGCCGAACTTCCTGCACTGATTAAATTACATTTTCCCAAAAATCCCAAGTGAGTTATACTTGTAGTTTAACCTCTGGCAGCTCCAGAGTGACATCTTCACATCGCCAATGCTTAGAATGTTTAGCCTCAATTTTGTATAACTGTCCTACTAGGTCTCTTTCTCAAATATTGTCGGGAAATTATTTGACTTAACTCTCTTTTTGTGCCTCATGTCCTTTTGTATATTATATTTGGCTTCACTTGACATTTTATAATTTTTAAATTTTTGTGCATTGTTCTCAATTAACATGGAATTGATTGGAACTTTTGTACACATATGATGGAACTTTAACAAAAGTTCGAACTTGATCCAAAACTTTTATAATGGAAACAAAAGAGAAGCAGCAAAGCGAATGAGGTGAAACATAATTAAACAATGTTCATCCAATCTTTGGTTCCTATGCATCATATCGTTTCACTCTCATTTGCAATCTCTTCTTTGTTCCCTCTCACTACTGCTCTGTACTGCTATACTGCAATTCATCAATATCATATGGAGCTGTAATTAGCTCGTTGAAAGGAAAATAATTACATTTCAATTGCCAAAATCATTTGGAATTGAACACGGTTTATTTGACTTTTGCTACAAACAATGTTTGATACATTTGTGTGTTCTGC

Coding sequence (CDS)

ATGCTTCCAAAACGGATGAAGATGGCCATTACAGATAACCCAAAGAAGCTTGCCAACTTGATTGATCTCGTAAATCTTCCTTCAACTCTCAGGGAGTTTGTGGGCCAGTCCCAAATTTCTCGTCTAGGCTGTTTCAAGTGTGTGTGGTCATATATCAAAACCAACAATCTTCAGGATCCTACCAACAAGAATGTGGTCATTTGTGATGAGAAGTTAAAGAGTATATTGCTAGGCAAGCCCAAGGTTGAGTTAGCCGAACTTCCTGCACTGATTAAATTACATTTTCCCAAAAATCCCAAGTGA

Protein sequence

MLPKRMKMAITDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFKCVWSYIKTNNLQDPTNKNVVICDEKLKSILLGKPKVELAELPALIKLHFPKNPK

Homology

[Close]

BLAST of Bhi03G002325 vs. Swiss-Prot
Match: sp|O74503|UAF30_SCHPO (Upstream activation factor subunit spp27 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=spp27 PE=1 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 5.3e-07
Identity = 22/44 (50.00%), Postives = 32/44 (72.73%), Query Frame = 0


Query: 32  EFVGQSQISRLGCFKCVWSYIKTNNLQDPTNKNVVICDEKLKSI 76
           EF+G  Q+SR    K +W YIK ++LQDP +K  ++CD+KLKS+
Sbjct: 129 EFLGLEQLSRPQTVKKLWEYIKAHDLQDPNDKRTILCDDKLKSV 172

[Close]

BLAST of Bhi03G002325 vs. Swiss-Prot
Match: sp|Q08747|UAF30_YEAST (Upstream activation factor subunit UAF30 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=UAF30 PE=1 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 5.3e-07
Identity = 26/77 (33.77%), Postives = 47/77 (61.04%), Query Frame = 0


Query: 24  VNLPSTLREFVGQSQISRLGCFKCVWSYIKTNNLQDPTNKNVVICDEKLKSILLGKPKVE 83
           V L  +L   +G+ +++R    + +W+YIK +NLQ+P NK  ++CDEKL+ ++LGK    
Sbjct: 124 VTLSKSLASLLGEHELTRTEVVRRLWAYIKAHNLQNPNNKKEILCDEKLE-LILGK-STN 183

Query: 84  LAELPALIKLHFPKNPK 101
           + E+  ++  H  +  K
Sbjct: 184 MFEMHKILASHMTEPKK 198

[Close]

BLAST of Bhi03G002325 vs. Swiss-Prot
Match: sp|Q05024|TRI1_YEAST (Protein TRI1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TRI1 PE=1 SV=1)

HSP 1 Score: 50.4 bits (119), Expect = 1.3e-05
Identity = 24/71 (33.80%), Postives = 44/71 (61.97%), Query Frame = 0


Query: 24  VNLPSTLREFVGQSQISRLGCFKCVWSYIKTNNLQDPTNKNVVICDEKLKSILLGKPKVE 83
           V L + L++F+G  ++ R    K +W YIK ++LQ+P ++  ++CDEK++ I  GK K+ 
Sbjct: 124 VLLSAPLQKFLGSEELPRTQVVKMIWQYIKEHDLQNPKDRREILCDEKMEPI-FGK-KMT 183

Query: 84  LAELPALIKLH 95
           +  +  L+  H
Sbjct: 184 MFSMNKLLTKH 192

[Close]

BLAST of Bhi03G002325 vs. TAIR10
Match: AT4G26810.1 (SWIB/MDM2 domain superfamily protein)

HSP 1 Score: 173.3 bits (438), Expect = 7.4e-44
Identity = 85/100 (85.00%), Postives = 90/100 (90.00%), Query Frame = 0


Query: 1   MLPKRMKMAITDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFKCVWSYIKTNNLQDP 60
           MLP+R+K AITDNPKKL NLIDLVNLPSTLR FVGQSQISRLGCF  VWSYIKTNNLQDP
Sbjct: 1   MLPQRLKKAITDNPKKLGNLIDLVNLPSTLRNFVGQSQISRLGCFMRVWSYIKTNNLQDP 60

Query: 61  TNKNVVICDEKLKSILLGKPKVELAELPALIKLHFPKNPK 101
            NKNVVICDEKLKSILLGK +VEL +LP+LIKLHFPK  K
Sbjct: 61  KNKNVVICDEKLKSILLGKQRVELVDLPSLIKLHFPKEQK 100

[Close]

BLAST of Bhi03G002325 vs. TAIR10
Match: AT2G35605.1 (SWIB/MDM2 domain superfamily protein)

HSP 1 Score: 77.8 bits (190), Expect = 4.2e-15
Identity = 33/79 (41.77%), Postives = 51/79 (64.56%), Query Frame = 0


Query: 20  LIDLVNLPSTLREFVGQSQISRLGCFKCVWSYIKTNNLQDPTNKNVVICDEKLKSILLGK 79
           ++ +V +   L  F+G++++SR    K +W YIK NNLQ+P NK  ++CDE+LK+I  GK
Sbjct: 30  ILKVVPVSKPLANFIGENEVSRTTAVKKIWEYIKLNNLQNPVNKREILCDEQLKTIFSGK 89

Query: 80  PKVELAELPALIKLHFPKN 99
             V   E+  L+  HFPK+
Sbjct: 90  DTVGFLEISKLLSQHFPKS 108

[Close]

BLAST of Bhi03G002325 vs. TAIR10
Match: AT1G31760.1 (SWIB/MDM2 domain superfamily protein)

HSP 1 Score: 70.9 bits (172), Expect = 5.2e-13
Identity = 31/69 (44.93%), Postives = 45/69 (65.22%), Query Frame = 0


Query: 30  LREFVGQSQISRLGCFKCVWSYIKTNNLQDPTNKNVVICDEKLKSILLGKPKVELAELPA 89
           L  F G+ +++R    K VW Y+K +NLQ+P NK  + CD+KLK+I  GK KV + E+  
Sbjct: 43  LASFAGERELTRGSALKKVWEYVKLHNLQNPANKKEIHCDDKLKTIFDGKDKVGITEIMK 102

Query: 90  LIKLHFPKN 99
           L+  HFPK+
Sbjct: 103 LLSPHFPKS 111

[Close]

BLAST of Bhi03G002325 vs. TAIR10
Match: AT4G34290.1 (SWIB/MDM2 domain superfamily protein)

HSP 1 Score: 65.5 bits (158), Expect = 2.2e-11
Identity = 30/66 (45.45%), Postives = 42/66 (63.64%), Query Frame = 0


Query: 30  LREFVGQSQISRLGCFKCVWSYIKTNNLQDPTNKNVVICDEKLKSILLGKPKVELAELPA 89
           +++ VG  +I R    K +W+YIK ++LQDP NK  ++CDEKLK I  GK +V   E+  
Sbjct: 78  MQDVVGVPEIPRTQALKRIWAYIKEHDLQDPQNKRDILCDEKLKKIFEGKERVGFLEIAK 137

Query: 90  LIKLHF 96
           LI  HF
Sbjct: 138 LIGPHF 143

[Close]

BLAST of Bhi03G002325 vs. TAIR10
Match: AT3G03590.1 (SWIB/MDM2 domain superfamily protein)

HSP 1 Score: 63.9 bits (154), Expect = 6.3e-11
Identity = 29/68 (42.65%), Postives = 42/68 (61.76%), Query Frame = 0


Query: 30  LREFVGQSQISRLGCFKCVWSYIKTNNLQDPTNKNVVICDEKLKSILLGKPKVELAELPA 89
           L +F+G  + SR    K +W+YIK+++LQ+P +K  + CDE LK I  GK KV   E+  
Sbjct: 74  LAQFLGTGETSRTDAIKGIWTYIKSHDLQNPADKREIFCDETLKLIFEGKDKVGFLEISK 133

Query: 90  LIKLHFPK 98
           L+  HF K
Sbjct: 134 LLSPHFVK 141

[Close]

BLAST of Bhi03G002325 vs. TrEMBL
Match: tr|A0A1S3BL41|A0A1S3BL41_CUCME (upstream activation factor subunit spp27 OS=Cucumis melo OX=3656 GN=LOC103491221 PE=4 SV=1)

HSP 1 Score: 196.1 bits (497), Expect = 3.9e-47
Identity = 95/100 (95.00%), Postives = 98/100 (98.00%), Query Frame = 0


Query: 1   MLPKRMKMAITDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFKCVWSYIKTNNLQDP 60
           M  +RMKMA+TDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFKCVWSYIKTNNLQDP
Sbjct: 1   MTIRRMKMAMTDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFKCVWSYIKTNNLQDP 60

Query: 61  TNKNVVICDEKLKSILLGKPKVELAELPALIKLHFPKNPK 101
           TNKNVV+CDEKLKSILLGKPKVELAELPALIKLHFPKNPK
Sbjct: 61  TNKNVVVCDEKLKSILLGKPKVELAELPALIKLHFPKNPK 100

[Close]

BLAST of Bhi03G002325 vs. TrEMBL
Match: tr|A0A0A0L2E1|A0A0A0L2E1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G493210 PE=4 SV=1)

HSP 1 Score: 194.5 bits (493), Expect = 1.1e-46
Identity = 96/100 (96.00%), Postives = 96/100 (96.00%), Query Frame = 0


Query: 1   MLPKRMKMAITDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFKCVWSYIKTNNLQDP 60
           M  KRMKMAITDNPKKLANLIDLVNLPSTLREFVG SQISRLGCFKCVWSYIKTNNLQDP
Sbjct: 93  MATKRMKMAITDNPKKLANLIDLVNLPSTLREFVGHSQISRLGCFKCVWSYIKTNNLQDP 152

Query: 61  TNKNVVICDEKLKSILLGKPKVELAELPALIKLHFPKNPK 101
           TNKNVVICDEKLKSILLGKPKVELAELPALIKLHFPKN K
Sbjct: 153 TNKNVVICDEKLKSILLGKPKVELAELPALIKLHFPKNSK 192

[Close]

BLAST of Bhi03G002325 vs. TrEMBL
Match: tr|A0A151SBL4|A0A151SBL4_CAJCA (Upstream activation factor subunit UAF30 OS=Cajanus cajan OX=3821 GN=KK1_025905 PE=4 SV=1)

HSP 1 Score: 189.9 bits (481), Expect = 2.8e-45
Identity = 91/100 (91.00%), Postives = 96/100 (96.00%), Query Frame = 0


Query: 1   MLPKRMKMAITDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFKCVWSYIKTNNLQDP 60
           MLP+RMK AITDNPKKLANLIDL+NLPSTLREFVGQSQISRLGCFKCVWSYIKTNNLQDP
Sbjct: 1   MLPQRMKKAITDNPKKLANLIDLINLPSTLREFVGQSQISRLGCFKCVWSYIKTNNLQDP 60

Query: 61  TNKNVVICDEKLKSILLGKPKVELAELPALIKLHFPKNPK 101
            NKNVV CDEKLKSILLGKP+V+LAELPALIK+HFPK PK
Sbjct: 61  NNKNVVNCDEKLKSILLGKPQVDLAELPALIKMHFPKEPK 100

[Close]

BLAST of Bhi03G002325 vs. TrEMBL
Match: tr|C6T3J2|C6T3J2_SOYBN (Uncharacterized protein OS=Glycine max OX=3847 GN=100527179 PE=2 SV=1)

HSP 1 Score: 188.0 bits (476), Expect = 1.1e-44
Identity = 91/100 (91.00%), Postives = 95/100 (95.00%), Query Frame = 0


Query: 1   MLPKRMKMAITDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFKCVWSYIKTNNLQDP 60
           MLP+RMK AITDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFKC+WSYIKTNNLQD 
Sbjct: 1   MLPQRMKKAITDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFKCIWSYIKTNNLQDQ 60

Query: 61  TNKNVVICDEKLKSILLGKPKVELAELPALIKLHFPKNPK 101
            NKNVV CDEKLKSILLGKP+VELAELPALIK+HFPK PK
Sbjct: 61  NNKNVVNCDEKLKSILLGKPQVELAELPALIKMHFPKEPK 100

[Close]

BLAST of Bhi03G002325 vs. TrEMBL
Match: tr|I1N0J4|I1N0J4_SOYBN (Uncharacterized protein OS=Glycine max OX=3847 GN=100775234 PE=4 SV=1)

HSP 1 Score: 186.0 bits (471), Expect = 4.0e-44
Identity = 91/100 (91.00%), Postives = 94/100 (94.00%), Query Frame = 0


Query: 1   MLPKRMKMAITDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFKCVWSYIKTNNLQDP 60
           MLP+RMK AITDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFKCVW YIKTNNLQD 
Sbjct: 1   MLPQRMKKAITDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFKCVWFYIKTNNLQDQ 60

Query: 61  TNKNVVICDEKLKSILLGKPKVELAELPALIKLHFPKNPK 101
            NKNVV CDEKLKSILLGKP+VELAELPALIK+HFPK PK
Sbjct: 61  NNKNVVNCDEKLKSILLGKPQVELAELPALIKMHFPKEPK 100

[Close]

BLAST of Bhi03G002325 vs. NCBI nr
Match: XP_008449303.1 (PREDICTED: upstream activation factor subunit spp27 [Cucumis melo] >XP_008449304.1 PREDICTED: upstream activation factor subunit spp27 [Cucumis melo] >XP_008449305.1 PREDICTED: upstream activation factor subunit spp27 [Cucumis melo])

HSP 1 Score: 196.1 bits (497), Expect = 5.9e-47
Identity = 95/100 (95.00%), Postives = 98/100 (98.00%), Query Frame = 0


Query: 1   MLPKRMKMAITDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFKCVWSYIKTNNLQDP 60
           M  +RMKMA+TDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFKCVWSYIKTNNLQDP
Sbjct: 1   MTIRRMKMAMTDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFKCVWSYIKTNNLQDP 60

Query: 61  TNKNVVICDEKLKSILLGKPKVELAELPALIKLHFPKNPK 101
           TNKNVV+CDEKLKSILLGKPKVELAELPALIKLHFPKNPK
Sbjct: 61  TNKNVVVCDEKLKSILLGKPKVELAELPALIKLHFPKNPK 100

[Close]

BLAST of Bhi03G002325 vs. NCBI nr
Match: XP_011653889.1 (PREDICTED: upstream activation factor subunit spp27 [Cucumis sativus])

HSP 1 Score: 194.5 bits (493), Expect = 1.7e-46
Identity = 96/100 (96.00%), Postives = 96/100 (96.00%), Query Frame = 0


Query: 1   MLPKRMKMAITDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFKCVWSYIKTNNLQDP 60
           M  KRMKMAITDNPKKLANLIDLVNLPSTLREFVG SQISRLGCFKCVWSYIKTNNLQDP
Sbjct: 1   MATKRMKMAITDNPKKLANLIDLVNLPSTLREFVGHSQISRLGCFKCVWSYIKTNNLQDP 60

Query: 61  TNKNVVICDEKLKSILLGKPKVELAELPALIKLHFPKNPK 101
           TNKNVVICDEKLKSILLGKPKVELAELPALIKLHFPKN K
Sbjct: 61  TNKNVVICDEKLKSILLGKPKVELAELPALIKLHFPKNSK 100

[Close]

BLAST of Bhi03G002325 vs. NCBI nr
Match: KGN54777.1 (hypothetical protein Csa_4G493210 [Cucumis sativus])

HSP 1 Score: 194.5 bits (493), Expect = 1.7e-46
Identity = 96/100 (96.00%), Postives = 96/100 (96.00%), Query Frame = 0


Query: 1   MLPKRMKMAITDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFKCVWSYIKTNNLQDP 60
           M  KRMKMAITDNPKKLANLIDLVNLPSTLREFVG SQISRLGCFKCVWSYIKTNNLQDP
Sbjct: 93  MATKRMKMAITDNPKKLANLIDLVNLPSTLREFVGHSQISRLGCFKCVWSYIKTNNLQDP 152

Query: 61  TNKNVVICDEKLKSILLGKPKVELAELPALIKLHFPKNPK 101
           TNKNVVICDEKLKSILLGKPKVELAELPALIKLHFPKN K
Sbjct: 153 TNKNVVICDEKLKSILLGKPKVELAELPALIKLHFPKNSK 192

[Close]

BLAST of Bhi03G002325 vs. NCBI nr
Match: XP_022928748.1 (upstream activation factor subunit UAF30 [Cucurbita moschata] >XP_022928749.1 upstream activation factor subunit UAF30 [Cucurbita moschata])

HSP 1 Score: 193.0 bits (489), Expect = 5.0e-46
Identity = 95/100 (95.00%), Postives = 97/100 (97.00%), Query Frame = 0


Query: 1   MLPKRMKMAITDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFKCVWSYIKTNNLQDP 60
           MLP+RMK AITDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFK VWSYIKTNNLQDP
Sbjct: 1   MLPQRMKTAITDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFKYVWSYIKTNNLQDP 60

Query: 61  TNKNVVICDEKLKSILLGKPKVELAELPALIKLHFPKNPK 101
           TNKNVVICDEKLKSILLGK K+ELAELPALIKLHFPKNPK
Sbjct: 61  TNKNVVICDEKLKSILLGKSKIELAELPALIKLHFPKNPK 100

[Close]

BLAST of Bhi03G002325 vs. NCBI nr
Match: XP_022967913.1 (protein TRI1 isoform X1 [Cucurbita maxima])

HSP 1 Score: 192.2 bits (487), Expect = 8.5e-46
Identity = 95/100 (95.00%), Postives = 97/100 (97.00%), Query Frame = 0


Query: 1   MLPKRMKMAITDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFKCVWSYIKTNNLQDP 60
           MLP+RMK AITDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFK VWSYIKTNNLQDP
Sbjct: 56  MLPQRMKTAITDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFKYVWSYIKTNNLQDP 115

Query: 61  TNKNVVICDEKLKSILLGKPKVELAELPALIKLHFPKNPK 101
           TNKNVVICDEKL+SILLGK KVELAELPALIKLHFPKNPK
Sbjct: 116 TNKNVVICDEKLRSILLGKSKVELAELPALIKLHFPKNPK 155

The following BLAST results are available for this feature:

BLAST of Bhi03G002325 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|O74503\|UAF30_SCHPO	5.3e-07	50.00	Upstream activation factor subunit spp27 OS=Schizosaccharomyces pombe (strain 97...	[more]
sp\|Q08747\|UAF30_YEAST	5.3e-07	33.77	Upstream activation factor subunit UAF30 OS=Saccharomyces cerevisiae (strain ATC...	[more]
sp\|Q05024\|TRI1_YEAST	1.3e-05	33.80	Protein TRI1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 ...	[more]

BLAST of Bhi03G002325 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G26810.1	7.4e-44	85.00	SWIB/MDM2 domain superfamily protein	[more]
AT2G35605.1	4.2e-15	41.77	SWIB/MDM2 domain superfamily protein	[more]
AT1G31760.1	5.2e-13	44.93	SWIB/MDM2 domain superfamily protein	[more]
AT4G34290.1	2.2e-11	45.45	SWIB/MDM2 domain superfamily protein	[more]
AT3G03590.1	6.3e-11	42.65	SWIB/MDM2 domain superfamily protein	[more]

BLAST of Bhi03G002325 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3BL41\|A0A1S3BL41_CUCME	3.9e-47	95.00	upstream activation factor subunit spp27 OS=Cucumis melo OX=3656 GN=LOC103491221...	[more]
tr\|A0A0A0L2E1\|A0A0A0L2E1_CUCSA	1.1e-46	96.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G493210 PE=4 SV=1	[more]
tr\|A0A151SBL4\|A0A151SBL4_CAJCA	2.8e-45	91.00	Upstream activation factor subunit UAF30 OS=Cajanus cajan OX=3821 GN=KK1_025905 ...	[more]
tr\|C6T3J2\|C6T3J2_SOYBN	1.1e-44	91.00	Uncharacterized protein OS=Glycine max OX=3847 GN=100527179 PE=2 SV=1	[more]
tr\|I1N0J4\|I1N0J4_SOYBN	4.0e-44	91.00	Uncharacterized protein OS=Glycine max OX=3847 GN=100775234 PE=4 SV=1	[more]

BLAST of Bhi03G002325 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008449303.1	5.9e-47	95.00	PREDICTED: upstream activation factor subunit spp27 [Cucumis melo] >XP_008449304...	[more]
XP_011653889.1	1.7e-46	96.00	PREDICTED: upstream activation factor subunit spp27 [Cucumis sativus]	[more]
KGN54777.1	1.7e-46	96.00	hypothetical protein Csa_4G493210 [Cucumis sativus]	[more]
XP_022928748.1	5.0e-46	95.00	upstream activation factor subunit UAF30 [Cucurbita moschata] >XP_022928749.1 up...	[more]
XP_022967913.1	8.5e-46	95.00	protein TRI1 isoform X1 [Cucurbita maxima]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

Vocabulary: **INTERPRO**
Term	Definition
IPR036885	SWIB_MDM2_dom_sf
IPR003121	SWIB_MDM2_domain
IPR019835	SWIB_domain

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0005634	nucleus
molecular_function	GO:0005515	protein binding
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Bhi03M002325	Bhi03M002325	mRNA

InterPro

Analysis Name: InterPro Annotations of wax gourd
Date Performed: 2019-11-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR019835	SWIB domain	SMART	SM00151	swib_2	coord: 20..100 e-value: 1.0E-11 score: 55.0
IPR003121	SWIB/MDM2 domain	PFAM	PF02201	SWIB	coord: 24..95 e-value: 1.1E-22 score: 79.6
IPR036885	SWIB/MDM2 domain superfamily	GENE3D	G3DSA:1.10.245.10		coord: 5..100 e-value: 8.3E-22 score: 78.8
IPR036885	SWIB/MDM2 domain superfamily	SUPERFAMILY	SSF47592	SWIB/MDM2 domain	coord: 13..98
None	No IPR available	PANTHER	PTHR13844:SF8	EXPRESSED PROTEIN	coord: 28..96
None	No IPR available	PANTHER	PTHR13844	BRG-1 ASSOCIATED FACTOR 60 BAF60	coord: 28..96

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Bhi03G002325	Csa4G493210	Cucumber (Chinese Long) v2	cuwgoB398
Bhi03G002325	ClCG04G002280	Watermelon (Charleston Gray)	wcgwgoB389
Bhi03G002325	CSPI04G19900	Wild cucumber (PI 183967)	cpiwgoB403
Bhi03G002325	CmaCh03G000230	Cucurbita maxima (Rimu)	cmawgoB0796
Bhi03G002325	CmoCh03G000240	Cucurbita moschata (Rifu)	cmowgoB0789
Bhi03G002325	Lsi01G020710	Bottle gourd (USVL1VR-Ls)	lsiwgoB174
Bhi03G002325	Cp4.1LG10g12520	Cucurbita pepo (Zucchini)	cpewgoB0090
Bhi03G002325	Carg26093	Silver-seed gourd	carwgoB0628
Bhi03G002325	Cla011684	Watermelon (97103) v1	wgowmB444
Bhi03G002325	Cla97C04G069850	Watermelon (97103) v2	wgowmbB429

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Bhi03G002325	Cucumber (Gy14) v1	cgywgoB540
Bhi03G002325	Cucumber (Gy14) v2	cgybwgoB375
Bhi03G002325	Wild cucumber (PI 183967)	cpiwgoB396
Bhi03G002325	Cucumber (Chinese Long) v3	cucwgoB398
Bhi03G002325	Cucumber (Chinese Long) v3	cucwgoB419
Bhi03G002325	Cucumber (Chinese Long) v2	cuwgoB409
Bhi03G002325	Melon (DHL92) v3.6.1	medwgoB663
Bhi03G002325	Melon (DHL92) v3.5.1	mewgoB656
Bhi03G002325	Watermelon (Charleston Gray)	wcgwgoB393
Bhi03G002325	Watermelon (97103) v2	wgowmbB434
Bhi03G002325	Watermelon (97103) v1	wgowmB455