WMU12108 (transcribed_cluster) Watermelon (97103) v1

Overview
NameWMU12108
Typetranscribed_cluster
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionSWIB/MDM2 domain superfamily protein
LocationChr4 : 6377690 .. 6379527 (+)
Sequence length542
Genome Viewer
Sequences
The following sequences are available for this feature:

transcribed_cluster sequence

AAGCAAGTAGGTAATCAAACGCAAGAAGTGGCCATTACGACCGGGGGAGTTTGTGGGACAGTCCCAAGTTTCTCGTCTGGGATGCTTCAAGTGTAAGTGTGGTCGTATATCAAAACCAACAATCTTCAGGATCCGACGAACAAGAATGTGGTCATTTGTGATGATAAGTTAAAGAGTATATTGCTAGGTAAGCCGAAGGTTGAGCTAGCTGAACTTCCTGCACTGATTAAAATTACATTTTCCCAAAAATCCCAAGTGAGTTGTGCTTGCTGTTCAACCTCTGGCACCTCGACAATGGCGTCTTCATGTTGCCAATGTTCGGAATGTTTAGCTTCAATTTTTGTGTAAGTGTCCTACTAGGTTTCTTCTCCATATATTATCAGAAAGTTATATGACTTCTGCATAGAACATTTATTCAGCAATAGTGTCGGTTTTAAACTCTTCTTTTTTGTGCCTTCACGGCCTACTGTATATTATATTGGCTTCACTTGACATTGTATCGTTTTTTAATTTCGTGCATTGTTCTCAATTAACATGGAGTT
Homology
[Close]
BLAST of WMU12108 vs. TAIR10
Match: AT4G26810.1 (AT4G26810.1 SWIB/MDM2 domain superfamily protein)

HSP 1 Score: 85.1 bits (209), Expect = 4.8e-17
Identity = 39/53 (73.58%), Postives = 45/53 (84.91%), Query Frame = 1 

Query: 97  VWSYIKTNNLQDPTNKNVVICDDKLKSILLGKPKVELAELPALIKITFSQKSQ 156
           VWSYIKTNNLQDP NKNVVICD+KLKSILLGK +VEL +LP+LIK+ F ++ +
Sbjct: 48  VWSYIKTNNLQDPKNKNVVICDEKLKSILLGKQRVELVDLPSLIKLHFPKEQK 100

Query: 157  216
           
Sbjct: 108  100

Query: 217  256
           
Sbjct: 168  100


HSP 2 Score: 30.4 bits (67), Expect = 1.4e+00
Identity = 12/13 (92.31%), Postives = 11/13 (84.62%), Query Frame = 2 

Query: 50 FVGQSQVSRLGCF 89
          FVGQSQ+SRLGCF
Sbjct: 33 FVGQSQISRLGCF 45

[Close]
BLAST of WMU12108 vs. TAIR10
Match: AT1G31760.1 (AT1G31760.1 SWIB/MDM2 domain superfamily protein)

HSP 1 Score: 53.9 bits (128), Expect = 1.2e-07
Identity = 24/48 (50.00%), Postives = 30/48 (62.50%), Query Frame = 1 

Query: 97  VWSYIKTNNLQDPTNKNVVICDDKLKSILLGKPKVELAELPALIKITF 156
           VW Y+K +NLQ+P NK  + CDDKLK+I  GK KV + E+  L+   F
Sbjct: 61  VWEYVKLHNLQNPANKKEIHCDDKLKTIFDGKDKVGITEIMKLLSPHF 108

Query: 157  216
           
Sbjct: 121  108

Query: 217  241
           
Sbjct: 181  108

[Close]
BLAST of WMU12108 vs. TAIR10
Match: AT2G35605.1 (AT2G35605.1 SWIB/MDM2 domain superfamily protein)

HSP 1 Score: 52.8 bits (125), Expect = 2.6e-07
Identity = 22/52 (42.31%), Postives = 31/52 (59.62%), Query Frame = 1 

Query: 97  VWSYIKTNNLQDPTNKNVVICDDKLKSILLGKPKVELAELPALIKITFSQKS 156
           +W YIK NNLQ+P NK  ++CD++LK+I  GK  V   E+  L+   F + +
Sbjct: 58  IWEYIKLNNLQNPVNKREILCDEQLKTIFSGKDTVGFLEISKLLSQHFPKSA 109

Query: 157  216
           
Sbjct: 118  109

Query: 217  253
           
Sbjct: 178  109

[Close]
BLAST of WMU12108 vs. TAIR10
Match: AT4G34290.1 (AT4G34290.1 SWIB/MDM2 domain superfamily protein)

HSP 1 Score: 52.4 bits (124), Expect = 3.4e-07
Identity = 22/44 (50.00%), Postives = 29/44 (65.91%), Query Frame = 1 

Query: 97  VWSYIKTNNLQDPTNKNVVICDDKLKSILLGKPKVELAELPALI 156
           +W+YIK ++LQDP NK  ++CD+KLK I  GK +V   E+  LI
Sbjct: 96  IWAYIKEHDLQDPQNKRDILCDEKLKKIFEGKERVGFLEIAKLI 139

Query: 157  216
           
Sbjct: 156  139

Query: 217  229
           
Sbjct: 216  139

[Close]
BLAST of WMU12108 vs. TAIR10
Match: AT2G14880.1 (AT2G14880.1 SWIB/MDM2 domain superfamily protein)

HSP 1 Score: 51.6 bits (122), Expect = 5.8e-07
Identity = 21/44 (47.73%), Postives = 29/44 (65.91%), Query Frame = 1 

Query: 97  VWSYIKTNNLQDPTNKNVVICDDKLKSILLGKPKVELAELPALI 156
           +W+YIK ++LQDP NK  ++CD+KLK I  G+ +V   E+  LI
Sbjct: 93  IWAYIKEHDLQDPQNKREILCDEKLKKIFEGRDRVGFLEIAKLI 136

Query: 157  216
           
Sbjct: 153  136

Query: 217  229
           
Sbjct: 213  136

[Close]
BLAST of WMU12108 vs. TrEMBL
Match: A0A0A0L2E1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G493210 PE=4 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 3.1e-17
Identity = 46/53 (86.79%), Postives = 50/53 (94.34%), Query Frame = 1 

Query: 97  VWSYIKTNNLQDPTNKNVVICDDKLKSILLGKPKVELAELPALIKITFSQKSQ 156
           VWSYIKTNNLQDPTNKNVVICD+KLKSILLGKPKVELAELPALIK+ F + S+
Sbjct: 140 VWSYIKTNNLQDPTNKNVVICDEKLKSILLGKPKVELAELPALIKLHFPKNSK 192

Query: 157  216
           
Sbjct: 200  192

Query: 217  256
           
Sbjct: 260  192

[Close]
BLAST of WMU12108 vs. TrEMBL
Match: A0A0A0L2E1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G493210 PE=4 SV=1)

HSP 1 Score: 36.2 bits (82), Expect = 5.0e+01
Identity = 17/30 (56.67%), Postives = 19/30 (63.33%), Query Frame = 2 

Query: 47  EFVGQSQVSRLGCFKC-----KCGRISKPT 106
           EFVG SQ+SRLGCFKC     K   +  PT
Sbjct: 124 EFVGHSQISRLGCFKCVWSYIKTNNLQDPT 153

Query: 107  122
           
Sbjct: 184  153


HSP 2 Score: 90.5 bits (223), Expect = 2.2e-15
Identity = 42/51 (82.35%), Postives = 47/51 (92.16%), Query Frame = 1 

Query: 97  VWSYIKTNNLQDPTNKNVVICDDKLKSILLGKPKVELAELPALIKITFSQK 156
           VWSYIK NNLQDP NKNVVICDDKL+SILLGKP+VELAELPALIK+ F ++
Sbjct: 48  VWSYIKANNLQDPNNKNVVICDDKLRSILLGKPRVELAELPALIKLHFPKE 98

Query: 157  216
           
Sbjct: 108  98

Query: 217  250
           
Sbjct: 168  98

[Close]
BLAST of WMU12108 vs. TrEMBL
Match: D7T832_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_19s0090g01150 PE=4 SV=1)

HSP 1 Score: 32.3 bits (72), Expect = 7.3e+02
Identity = 13/14 (92.86%), Postives = 14/14 (100.00%), Query Frame = 2 

Query: 47 EFVGQSQVSRLGCF 89
          EFVGQSQ+SRLGCF
Sbjct: 32 EFVGQSQISRLGCF 45


HSP 2 Score: 87.8 bits (216), Expect = 1.5e-14
Identity = 41/51 (80.39%), Postives = 46/51 (90.20%), Query Frame = 1 

Query: 97  VWSYIKTNNLQDPTNKNVVICDDKLKSILLGKPKVELAELPALIKITFSQK 156
           VWSYIK NNLQDP NKNV+ CDDKLKSILLGKP+VELAELPALIK+ F ++
Sbjct: 48  VWSYIKANNLQDPNNKNVINCDDKLKSILLGKPQVELAELPALIKMHFPKE 98

Query: 157  216
           
Sbjct: 108  98

Query: 217  250
           
Sbjct: 168  98

[Close]
BLAST of WMU12108 vs. TrEMBL
Match: A0A0L9VA60_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan09g060000 PE=4 SV=1)

HSP 1 Score: 32.3 bits (72), Expect = 7.3e+02
Identity = 13/14 (92.86%), Postives = 14/14 (100.00%), Query Frame = 2 

Query: 47 EFVGQSQVSRLGCF 89
          EFVGQSQ+SRLGCF
Sbjct: 32 EFVGQSQISRLGCF 45


HSP 2 Score: 87.8 bits (216), Expect = 1.5e-14
Identity = 41/51 (80.39%), Postives = 46/51 (90.20%), Query Frame = 1 

Query: 97  VWSYIKTNNLQDPTNKNVVICDDKLKSILLGKPKVELAELPALIKITFSQK 156
           VWSYIK NNLQDP NKNV+ CDDKLKSILLGKP+VELAELPALIK+ F ++
Sbjct: 48  VWSYIKANNLQDPNNKNVINCDDKLKSILLGKPQVELAELPALIKMHFPKE 98

Query: 157  216
           
Sbjct: 108  98

Query: 217  250
           
Sbjct: 168  98

[Close]
BLAST of WMU12108 vs. TrEMBL
Match: A0A0S3S6Y0_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.05G213500 PE=4 SV=1)

HSP 1 Score: 32.3 bits (72), Expect = 7.3e+02
Identity = 13/14 (92.86%), Postives = 14/14 (100.00%), Query Frame = 2 

Query: 47 EFVGQSQVSRLGCF 89
          EFVGQSQ+SRLGCF
Sbjct: 32 EFVGQSQISRLGCF 45


HSP 2 Score: 87.4 bits (215), Expect = 1.9e-14
Identity = 41/51 (80.39%), Postives = 47/51 (92.16%), Query Frame = 1 

Query: 97  VWSYIKTNNLQDPTNKNVVICDDKLKSILLGKPKVELAELPALIKITFSQK 156
           VWSYIKTNNLQDP NKNVV CD+KLKSILLGKP+V+LAELPALIK+ F ++
Sbjct: 48  VWSYIKTNNLQDPNNKNVVNCDEKLKSILLGKPQVDLAELPALIKMHFPKE 98

Query: 157  216
           
Sbjct: 108  98

Query: 217  250
           
Sbjct: 168  98

[Close]
BLAST of WMU12108 vs. NCBI nr
Match: gi|778694879|ref|XP_011653889.1| (PREDICTED: upstream activation factor subunit spp27 [Cucumis sativus])

HSP 1 Score: 96.7 bits (239), Expect = 4.5e-17
Identity = 46/53 (86.79%), Postives = 50/53 (94.34%), Query Frame = 1 

Query: 97  VWSYIKTNNLQDPTNKNVVICDDKLKSILLGKPKVELAELPALIKITFSQKSQ 156
           VWSYIKTNNLQDPTNKNVVICD+KLKSILLGKPKVELAELPALIK+ F + S+
Sbjct: 48  VWSYIKTNNLQDPTNKNVVICDEKLKSILLGKPKVELAELPALIKLHFPKNSK 100

Query: 157  216
           
Sbjct: 108  100

Query: 217  256
           
Sbjct: 168  100

[Close]
BLAST of WMU12108 vs. NCBI nr
Match: gi|700199619|gb|KGN54777.1| (hypothetical protein Csa_4G493210 [Cucumis sativus])

HSP 1 Score: 96.7 bits (239), Expect = 4.5e-17
Identity = 46/53 (86.79%), Postives = 50/53 (94.34%), Query Frame = 1 

Query: 97  VWSYIKTNNLQDPTNKNVVICDDKLKSILLGKPKVELAELPALIKITFSQKSQ 156
           VWSYIKTNNLQDPTNKNVVICD+KLKSILLGKPKVELAELPALIK+ F + S+
Sbjct: 140 VWSYIKTNNLQDPTNKNVVICDEKLKSILLGKPKVELAELPALIKLHFPKNSK 192

Query: 157  216
           
Sbjct: 200  192

Query: 217  256
           
Sbjct: 260  192

[Close]
BLAST of WMU12108 vs. NCBI nr
Match: gi|659096818|ref|XP_008449303.1| (PREDICTED: upstream activation factor subunit spp27 [Cucumis melo])

HSP 1 Score: 94.0 bits (232), Expect = 2.9e-16
Identity = 44/48 (91.67%), Postives = 47/48 (97.92%), Query Frame = 1 

Query: 97  VWSYIKTNNLQDPTNKNVVICDDKLKSILLGKPKVELAELPALIKITF 156
           VWSYIKTNNLQDPTNKNVV+CD+KLKSILLGKPKVELAELPALIK+ F
Sbjct: 48  VWSYIKTNNLQDPTNKNVVVCDEKLKSILLGKPKVELAELPALIKLHF 95

Query: 157  216
           
Sbjct: 108  95

Query: 217  241
           
Sbjct: 168  95

[Close]
BLAST of WMU12108 vs. NCBI nr
Match: gi|225460865|ref|XP_002277738.1| (PREDICTED: upstream activation factor subunit spp27 [Vitis vinifera])

HSP 1 Score: 90.5 bits (223), Expect = 3.2e-15
Identity = 42/51 (82.35%), Postives = 47/51 (92.16%), Query Frame = 1 

Query: 97  VWSYIKTNNLQDPTNKNVVICDDKLKSILLGKPKVELAELPALIKITFSQK 156
           VWSYIK NNLQDP NKNVVICDDKL+SILLGKP+VELAELPALIK+ F ++
Sbjct: 48  VWSYIKANNLQDPNNKNVVICDDKLRSILLGKPRVELAELPALIKLHFPKE 98

Query: 157  216
           
Sbjct: 108  98

Query: 217  250
           
Sbjct: 168  98

[Close]
BLAST of WMU12108 vs. NCBI nr
Match: gi|1000942966|ref|XP_015582122.1| (PREDICTED: upstream activation factor subunit UAF30 isoform X1 [Ricinus communis])

HSP 1 Score: 88.6 bits (218), Expect = 1.2e-14
Identity = 41/54 (75.93%), Postives = 48/54 (88.89%), Query Frame = 1 

Query: 97  VWSYIKTNNLQDPTNKNVVICDDKLKSILLGKPKVELAELPALIKITFSQKSQV 156
           VWSYIKTNNLQDP NKNVV CD+KLKSILLGKP+V+LAELPALIK+ F ++  +
Sbjct: 48  VWSYIKTNNLQDPNNKNVVNCDEKLKSILLGKPQVDLAELPALIKLHFPKEPNI 101

Query: 157  216
           
Sbjct: 108  101

Query: 217  259
           
Sbjct: 168  101

The following BLAST results are available for this feature:
BLAST of WMU12108 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G26810.14.8e-1773.58 SWIB/MDM2 domain superfamily protein[more]
AT1G31760.11.2e-0750.00 SWIB/MDM2 domain superfamily protein[more]
AT2G35605.12.6e-0742.31 SWIB/MDM2 domain superfamily protein[more]
AT4G34290.13.4e-0750.00 SWIB/MDM2 domain superfamily protein[more]
AT2G14880.15.8e-0747.73 SWIB/MDM2 domain superfamily protein[more]
BLAST of WMU12108 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L2E1_CUCSA3.1e-1786.79Uncharacterized protein OS=Cucumis sativus GN=Csa_4G493210 PE=4 SV=1[more]
A0A0A0L2E1_CUCSA5.0e+0156.67Uncharacterized protein OS=Cucumis sativus GN=Csa_4G493210 PE=4 SV=1[more]
D7T832_VITVI7.3e+0292.86Putative uncharacterized protein OS=Vitis vinifera GN=VIT_19s0090g01150 PE=4 SV=... [more]
A0A0L9VA60_PHAAN7.3e+0292.86Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan09g060000 PE=4 SV=1[more]
A0A0S3S6Y0_PHAAN7.3e+0292.86Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.05G213500 PE=... [more]
BLAST of WMU12108 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778694879|ref|XP_011653889.1|4.5e-1786.79PREDICTED: upstream activation factor subunit spp27 [Cucumis sativus][more]
gi|700199619|gb|KGN54777.1|4.5e-1786.79hypothetical protein Csa_4G493210 [Cucumis sativus][more]
gi|659096818|ref|XP_008449303.1|2.9e-1691.67PREDICTED: upstream activation factor subunit spp27 [Cucumis melo][more]
gi|225460865|ref|XP_002277738.1|3.2e-1582.35PREDICTED: upstream activation factor subunit spp27 [Vitis vinifera][more]
gi|1000942966|ref|XP_015582122.1|1.2e-1475.93PREDICTED: upstream activation factor subunit UAF30 isoform X1 [Ricinus communis... [more]
Relationships

This transcribed_cluster is associated with the following gene feature(s):

Feature NameUnique NameType
Cla011684Cla011684gene


The following EST feature(s) are a part of this transcribed_cluster:

Feature NameUnique NameType
S2_0087390S2_0087390EST
S3_0087041S3_0087041EST