WMU37430 (transcribed_cluster) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	WMU37430
Type	transcribed_cluster
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Unknown protein
Location	Chr4 : 6377126 .. 6379625 (-)
Sequence length	886

Genome Viewer

Sequences

The following sequences are available for this feature:

transcribed_cluster sequence

CTCACTTTGTAGCCTCTCTTCTGTTTTCCATTCTAAAAGTTTTGAATCAAGTTTTGAACTTCTGTCAAAAGTTCCATCATATTTGTACAAAAATTCCAATAAACTCCATGTTAATTGAGAACAATGCACGAAAATTAAAAAACGATACAATGTCAAGTGAAGCCAATATAATATACAGTAGGCCATGAGGCACAAAAAGAGAGTTAAACCGACACTATTGCTGAATAAATGTTCTATGCAGAAGTCATATAACTTTCTGATAATATATGGAGAAGAAACCTAGTAGGACACTTACACAAAATTGAAGCTAAACATTCCGAACATTGGCAACATGAAGACGCCATTGTCGAGGTGCCAGAGGTTGAACAGCAAGCACAACTCACTTGGGGTTTTTGGGAAAATGTAATTTAATCAGTGCAGGAAGTTCAGCTAGCTCAACCTTCGGCTTACCTAGCAATATACTCTTTAACTTATCATCACAAATGACCACATTCTTGTTCGTCGGATCCTGAAGATTGTTGGTTTTGATATACGACCACACACACTTGAAACAATCCCAGACGAGAAACTTGGGACTGTCCCACAAAACTCCCTGAGAGTTGAAGGAAGGTTAACAAGATCAATCAAGTTGGCAAGCTTCTTTGGGTTATCTGTAATGCCCATCTTCATCCGTTTTGGCAGCATTTTTCTGCACAACTAGTTTGCTTCCTCCTCCACTGAGAAAAGGAAGAAGAAAAACCTCTATGAATTAGAAATAGTAAACAGAGAACATAGGGGAAGAAAGGGAATTAGGGCCCGGTAAGATAGGGAAGAAGGATAGTTTTGTTTGCGTGTCCAAGACTTGAGCGCTCGAATTGTTTGCAACTGCGAGCTGCGAGTGCATCCC

Library


Library category	ESTs
watermelon fruit 10d library	7
watermelon fruit 18d library	5
watermelon fruit 26d library	8
watermelon fruit 34d library	3

Homology

[Close]

BLAST of WMU37430 vs. TAIR10
Match: AT4G26810.1 (AT4G26810.1 SWIB/MDM2 domain superfamily protein)

HSP 1 Score: 99.4 bits (246), Expect = 4.0e-21
Identity = 46/57 (80.70%), Postives = 48/57 (84.21%), Query Frame = -1


Query: 383 CFKCVWSYIKTNNLQDPTNKNVVICDDKLKSILLGKPKVELAELPALIKLHFPKNPK 442
           CF  VWSYIKTNNLQDP NKNVVICD+KLKSILLGK +VEL +LP+LIKLHFPK  K
Sbjct: 44  CFMRVWSYIKTNNLQDPKNKNVVICDEKLKSILLGKQRVELVDLPSLIKLHFPKEQK 100

Query: 443  502
           
Sbjct: 104  100

Query: 503  554
           
Sbjct: 164  100

HSP 2 Score: 60.1 bits (144), Expect = 2.7e-09
Identity = 28/35 (80.00%), Postives = 28/35 (80.00%), Query Frame = -2


Query: 580 MLPKRMKMGITDNPKKLANLIDLVNLPSTLREFCG 639
           MLP+R+K  ITDNPKKL NLIDLVNLPSTLR F G
Sbjct: 1   MLPQRLKKAITDNPKKLGNLIDLVNLPSTLRNFVG 35

Query: 640  685
           
Sbjct: 61   35

[Close]

BLAST of WMU37430 vs. TAIR10
Match: AT1G31760.1 (AT1G31760.1 SWIB/MDM2 domain superfamily protein)

HSP 1 Score: 63.5 bits (153), Expect = 2.4e-10
Identity = 28/53 (52.83%), Postives = 35/53 (66.04%), Query Frame = -1


Query: 389 KCVWSYIKTNNLQDPTNKNVVICDDKLKSILLGKPKVELAELPALIKLHFPKN 448
           K VW Y+K +NLQ+P NK  + CDDKLK+I  GK KV + E+  L+  HFPK+
Sbjct: 59  KKVWEYVKLHNLQNPANKKEIHCDDKLKTIFDGKDKVGITEIMKLLSPHFPKS 111

Query: 449  508
           
Sbjct: 119  111

Query: 509  548
           
Sbjct: 179  111

[Close]

BLAST of WMU37430 vs. TAIR10
Match: AT2G35605.1 (AT2G35605.1 SWIB/MDM2 domain superfamily protein)

HSP 1 Score: 62.4 bits (150), Expect = 5.4e-10
Identity = 26/53 (49.06%), Postives = 34/53 (64.15%), Query Frame = -1


Query: 389 KCVWSYIKTNNLQDPTNKNVVICDDKLKSILLGKPKVELAELPALIKLHFPKN 448
           K +W YIK NNLQ+P NK  ++CD++LK+I  GK  V   E+  L+  HFPK+
Sbjct: 56  KKIWEYIKLNNLQNPVNKREILCDEQLKTIFSGKDTVGFLEISKLLSQHFPKS 108

Query: 449  508
           
Sbjct: 116  108

Query: 509  548
           
Sbjct: 176  108

[Close]

BLAST of WMU37430 vs. TAIR10
Match: AT2G14880.1 (AT2G14880.1 SWIB/MDM2 domain superfamily protein)

HSP 1 Score: 56.6 bits (135), Expect = 3.0e-08
Identity = 25/59 (42.37%), Postives = 34/59 (57.63%), Query Frame = -1


Query: 398 PKFLVWDCFKCVWSYIKTNNLQDPTNKNVVICDDKLKSILLGKPKVELAELPALIKLHF 457
           P+       K +W+YIK ++LQDP NK  ++CD+KLK I  G+ +V   E+  LI  HF
Sbjct: 82  PEIARTQALKRIWAYIKEHDLQDPQNKREILCDEKLKKIFEGRDRVGFLEIAKLIGPHF 140

Query: 458  517
           
Sbjct: 142  140

Query: 518  575
           
Sbjct: 202  140

[Close]

BLAST of WMU37430 vs. TAIR10
Match: AT4G34290.1 (AT4G34290.1 SWIB/MDM2 domain superfamily protein)

HSP 1 Score: 56.6 bits (135), Expect = 3.0e-08
Identity = 25/50 (50.00%), Postives = 32/50 (64.00%), Query Frame = -1


Query: 398 KCVWSYIKTNNLQDPTNKNVVICDDKLKSILLGKPKVELAELPALIKLHF 457
           K +W+YIK ++LQDP NK  ++CD+KLK I  GK +V   E+  LI  HF
Sbjct: 94  KRIWAYIKEHDLQDPQNKRDILCDEKLKKIFEGKERVGFLEIAKLIGPHF 143

Query: 458  517
           
Sbjct: 154  143

Query: 518  548
           
Sbjct: 214  143

[Close]

BLAST of WMU37430 vs. TrEMBL
Match: A0A0A0L2E1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G493210 PE=4 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 9.7e-24
Identity = 55/57 (96.49%), Postives = 56/57 (98.25%), Query Frame = -1


Query: 383 CFKCVWSYIKTNNLQDPTNKNVVICDDKLKSILLGKPKVELAELPALIKLHFPKNPK 442
           CFKCVWSYIKTNNLQDPTNKNVVICD+KLKSILLGKPKVELAELPALIKLHFPKN K
Sbjct: 136 CFKCVWSYIKTNNLQDPTNKNVVICDEKLKSILLGKPKVELAELPALIKLHFPKNSK 192

Query: 443  502
           
Sbjct: 196  192

Query: 503  554
           
Sbjct: 256  192

[Close]

BLAST of WMU37430 vs. TrEMBL
Match: A0A0A0L2E1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G493210 PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 3.0e-09
Identity = 35/41 (85.37%), Postives = 35/41 (85.37%), Query Frame = -2


Query: 580 N*LCRKMLPKRMKMGITDNPKKLANLIDLVNLPSTLREFCG 639
           N LC KM  KRMKM ITDNPKKLANLIDLVNLPSTLREF G
Sbjct: 87  NLLCTKMATKRMKMAITDNPKKLANLIDLVNLPSTLREFVG 127

Query: 640  699
           
Sbjct: 147  127

Query: 700  703
           
Sbjct: 207  127

HSP 2 Score: 111.7 bits (278), Expect = 1.5e-21
Identity = 50/57 (87.72%), Postives = 54/57 (94.74%), Query Frame = -1


Query: 383 CFKCVWSYIKTNNLQDPTNKNVVICDDKLKSILLGKPKVELAELPALIKLHFPKNPK 442
           CFKCVWSYIKTNNLQDP NKNVV CD+KLKSILLGKP+V+LAELPALIK+HFPK PK
Sbjct: 44  CFKCVWSYIKTNNLQDPNNKNVVNCDEKLKSILLGKPQVDLAELPALIKMHFPKEPK 100

Query: 443  502
           
Sbjct: 104  100

Query: 503  554
           
Sbjct: 164  100

[Close]

BLAST of WMU37430 vs. TrEMBL
Match: A0A151SBL4_CAJCA (Upstream activation factor subunit UAF30 OS=Cajanus cajan GN=KK1_025905 PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 2.8e-07
Identity = 30/35 (85.71%), Postives = 32/35 (91.43%), Query Frame = -2


Query: 580 MLPKRMKMGITDNPKKLANLIDLVNLPSTLREFCG 639
           MLP+RMK  ITDNPKKLANLIDL+NLPSTLREF G
Sbjct: 1   MLPQRMKKAITDNPKKLANLIDLINLPSTLREFVG 35

Query: 640  685
           
Sbjct: 61   35

HSP 2 Score: 109.4 bits (272), Expect = 7.7e-21
Identity = 49/57 (85.96%), Postives = 53/57 (92.98%), Query Frame = -1


Query: 383 CFKCVWSYIKTNNLQDPTNKNVVICDDKLKSILLGKPKVELAELPALIKLHFPKNPK 442
           CFKC+WSYIKTNNLQD  NKNVV CD+KLKSILLGKP+VELAELPALIK+HFPK PK
Sbjct: 44  CFKCIWSYIKTNNLQDQNNKNVVNCDEKLKSILLGKPQVELAELPALIKMHFPKEPK 100

Query: 443  502
           
Sbjct: 104  100

Query: 503  554
           
Sbjct: 164  100

[Close]

BLAST of WMU37430 vs. TrEMBL
Match: A0A0B2NVJ3_GLYSO (Upstream activation factor subunit spp27 OS=Glycine soja GN=glysoja_006364 PE=4 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 2.2e-07
Identity = 31/35 (88.57%), Postives = 32/35 (91.43%), Query Frame = -2


Query: 580 MLPKRMKMGITDNPKKLANLIDLVNLPSTLREFCG 639
           MLP+RMK  ITDNPKKLANLIDLVNLPSTLREF G
Sbjct: 1   MLPQRMKKAITDNPKKLANLIDLVNLPSTLREFVG 35

Query: 640  685
           
Sbjct: 61   35

HSP 2 Score: 109.4 bits (272), Expect = 7.7e-21
Identity = 49/57 (85.96%), Postives = 53/57 (92.98%), Query Frame = -1


Query: 383 CFKCVWSYIKTNNLQDPTNKNVVICDDKLKSILLGKPKVELAELPALIKLHFPKNPK 442
           CFKC+WSYIKTNNLQD  NKNVV CD+KLKSILLGKP+VELAELPALIK+HFPK PK
Sbjct: 44  CFKCIWSYIKTNNLQDQNNKNVVNCDEKLKSILLGKPQVELAELPALIKMHFPKEPK 100

Query: 443  502
           
Sbjct: 104  100

Query: 503  554
           
Sbjct: 164  100

[Close]

BLAST of WMU37430 vs. TrEMBL
Match: C6T3J2_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_08G321900 PE=2 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 2.2e-07
Identity = 31/35 (88.57%), Postives = 32/35 (91.43%), Query Frame = -2


Query: 580 MLPKRMKMGITDNPKKLANLIDLVNLPSTLREFCG 639
           MLP+RMK  ITDNPKKLANLIDLVNLPSTLREF G
Sbjct: 1   MLPQRMKKAITDNPKKLANLIDLVNLPSTLREFVG 35

Query: 640  685
           
Sbjct: 61   35

HSP 2 Score: 107.8 bits (268), Expect = 2.2e-20
Identity = 49/57 (85.96%), Postives = 52/57 (91.23%), Query Frame = -1


Query: 383 CFKCVWSYIKTNNLQDPTNKNVVICDDKLKSILLGKPKVELAELPALIKLHFPKNPK 442
           CF CVWSYIKT NLQDP NKNVV CDDKLKSILLGKP+V+LAELPALIK+HFPK PK
Sbjct: 44  CFMCVWSYIKTKNLQDPYNKNVVNCDDKLKSILLGKPQVDLAELPALIKMHFPKEPK 100

Query: 443  502
           
Sbjct: 104  100

Query: 503  554
           
Sbjct: 164  100

[Close]

BLAST of WMU37430 vs. NCBI nr
Match: gi|659096818|ref|XP_008449303.1| (PREDICTED: upstream activation factor subunit spp27 [Cucumis melo])

HSP 1 Score: 121.7 bits (304), Expect = 2.1e-24
Identity = 55/57 (96.49%), Postives = 57/57 (100.00%), Query Frame = -1


Query: 383 CFKCVWSYIKTNNLQDPTNKNVVICDDKLKSILLGKPKVELAELPALIKLHFPKNPK 442
           CFKCVWSYIKTNNLQDPTNKNVV+CD+KLKSILLGKPKVELAELPALIKLHFPKNPK
Sbjct: 44  CFKCVWSYIKTNNLQDPTNKNVVVCDEKLKSILLGKPKVELAELPALIKLHFPKNPK 100

Query: 443  502
           
Sbjct: 104  100

Query: 503  554
           
Sbjct: 164  100

[Close]

BLAST of WMU37430 vs. NCBI nr
Match: gi|778694879|ref|XP_011653889.1| (PREDICTED: upstream activation factor subunit spp27 [Cucumis sativus])

HSP 1 Score: 119.0 bits (297), Expect = 1.4e-23
Identity = 55/57 (96.49%), Postives = 56/57 (98.25%), Query Frame = -1


Query: 383 CFKCVWSYIKTNNLQDPTNKNVVICDDKLKSILLGKPKVELAELPALIKLHFPKNPK 442
           CFKCVWSYIKTNNLQDPTNKNVVICD+KLKSILLGKPKVELAELPALIKLHFPKN K
Sbjct: 44  CFKCVWSYIKTNNLQDPTNKNVVICDEKLKSILLGKPKVELAELPALIKLHFPKNSK 100

Query: 443  502
           
Sbjct: 104  100

Query: 503  554
           
Sbjct: 164  100

[Close]

BLAST of WMU37430 vs. NCBI nr
Match: gi|700199619|gb|KGN54777.1| (hypothetical protein Csa_4G493210 [Cucumis sativus])

HSP 1 Score: 119.0 bits (297), Expect = 1.4e-23
Identity = 55/57 (96.49%), Postives = 56/57 (98.25%), Query Frame = -1


Query: 383 CFKCVWSYIKTNNLQDPTNKNVVICDDKLKSILLGKPKVELAELPALIKLHFPKNPK 442
           CFKCVWSYIKTNNLQDPTNKNVVICD+KLKSILLGKPKVELAELPALIKLHFPKN K
Sbjct: 136 CFKCVWSYIKTNNLQDPTNKNVVICDEKLKSILLGKPKVELAELPALIKLHFPKNSK 192

Query: 443  502
           
Sbjct: 196  192

Query: 503  554
           
Sbjct: 256  192

[Close]

BLAST of WMU37430 vs. NCBI nr
Match: gi|1012340959|gb|KYP52168.1| (Upstream activation factor subunit UAF30 [Cajanus cajan])

HSP 1 Score: 111.7 bits (278), Expect = 2.2e-21
Identity = 50/57 (87.72%), Postives = 54/57 (94.74%), Query Frame = -1


Query: 383 CFKCVWSYIKTNNLQDPTNKNVVICDDKLKSILLGKPKVELAELPALIKLHFPKNPK 442
           CFKCVWSYIKTNNLQDP NKNVV CD+KLKSILLGKP+V+LAELPALIK+HFPK PK
Sbjct: 44  CFKCVWSYIKTNNLQDPNNKNVVNCDEKLKSILLGKPQVDLAELPALIKMHFPKEPK 100

Query: 443  502
           
Sbjct: 104  100

Query: 503  554
           
Sbjct: 164  100

[Close]

BLAST of WMU37430 vs. NCBI nr
Match: gi|951056859|ref|XP_014521860.1| (PREDICTED: upstream activation factor subunit spp27 [Vigna radiata var. radiata])

HSP 1 Score: 109.8 bits (273), Expect = 8.4e-21
Identity = 48/57 (84.21%), Postives = 53/57 (92.98%), Query Frame = -1


Query: 383 CFKCVWSYIKTNNLQDPTNKNVVICDDKLKSILLGKPKVELAELPALIKLHFPKNPK 442
           CF CVWSY+K NNLQDP+NKNV+ CDDKLKSILLGKP+VELAELPALIK+HFPK PK
Sbjct: 44  CFMCVWSYVKANNLQDPSNKNVINCDDKLKSILLGKPQVELAELPALIKMHFPKEPK 100

Query: 443  502
           
Sbjct: 104  100

Query: 503  554
           
Sbjct: 164  100

The following BLAST results are available for this feature:

BLAST of WMU37430 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G26810.1	4.0e-21	80.70	SWIB/MDM2 domain superfamily protein	[more]
AT1G31760.1	2.4e-10	52.83	SWIB/MDM2 domain superfamily protein	[more]
AT2G35605.1	5.4e-10	49.06	SWIB/MDM2 domain superfamily protein	[more]
AT2G14880.1	3.0e-08	42.37	SWIB/MDM2 domain superfamily protein	[more]
AT4G34290.1	3.0e-08	50.00	SWIB/MDM2 domain superfamily protein	[more]

BLAST of WMU37430 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L2E1_CUCSA	9.7e-24	96.49	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G493210 PE=4 SV=1	[more]
A0A0A0L2E1_CUCSA	3.0e-09	85.37	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G493210 PE=4 SV=1	[more]
A0A151SBL4_CAJCA	2.8e-07	85.71	Upstream activation factor subunit UAF30 OS=Cajanus cajan GN=KK1_025905 PE=4 SV=...	[more]
A0A0B2NVJ3_GLYSO	2.2e-07	88.57	Upstream activation factor subunit spp27 OS=Glycine soja GN=glysoja_006364 PE=4 ...	[more]
C6T3J2_SOYBN	2.2e-07	88.57	Uncharacterized protein OS=Glycine max GN=GLYMA_08G321900 PE=2 SV=1	[more]

BLAST of WMU37430 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659096818\|ref\|XP_008449303.1\|	2.1e-24	96.49	PREDICTED: upstream activation factor subunit spp27 [Cucumis melo]	[more]
gi\|778694879\|ref\|XP_011653889.1\|	1.4e-23	96.49	PREDICTED: upstream activation factor subunit spp27 [Cucumis sativus]	[more]
gi\|700199619\|gb\|KGN54777.1\|	1.4e-23	96.49	hypothetical protein Csa_4G493210 [Cucumis sativus]	[more]
gi\|1012340959\|gb\|KYP52168.1\|	2.2e-21	87.72	Upstream activation factor subunit UAF30 [Cajanus cajan]	[more]
gi\|951056859\|ref\|XP_014521860.1\|	8.4e-21	84.21	PREDICTED: upstream activation factor subunit spp27 [Vigna radiata var. radiata]	[more]

Relationships

This transcribed_cluster is associated with the following gene feature(s):


Feature Name	Unique Name	Type
Cla011684	Cla011684	gene

The following EST feature(s) are a part of this transcribed_cluster:


Feature Name	Unique Name	Type
S1_0010575	S1_0010575	EST
S1_0061650	S1_0061650	EST
S1_0065002	S1_0065002	EST
S1_0130508	S1_0130508	EST
S1_0138217	S1_0138217	EST
S1_0147343	S1_0147343	EST
S1_0154019	S1_0154019	EST
S2_0016247	S2_0016247	EST
S2_0050483	S2_0050483	EST
S2_0062124	S2_0062124	EST
S2_0094937	S2_0094937	EST
S2_0138000	S2_0138000	EST
S3_0013739	S3_0013739	EST
S3_0020796	S3_0020796	EST
S3_0038834	S3_0038834	EST
S3_0051437	S3_0051437	EST
S3_0084331	S3_0084331	EST
S3_0129919	S3_0129919	EST
S3_0160196	S3_0160196	EST
S3_0182864	S3_0182864	EST
S4_0016098	S4_0016098	EST
S4_0029253	S4_0029253	EST
S4_0064401	S4_0064401	EST