Cla008859 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla008859
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	ABC-type Co2+ transport system permease component (AHRD V1 **-- B6TSG4_MAIZE)
Location	Chr10 : 1259405 .. 1259872 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATCACTCAACGATTTTAAATGCAACATTGAGACGTCCGAAGGGATTCGGACCAGCTCCAAGGAGGAAAAAGACAAAGAAAACAAAAGGAGAAGGAAGCGAGGACGAAGACGAAAACGAAGAAGACGAAGAAGAAGAAGAGGAAGGTGGTGTAATACCAGAAGTAGTGACAAACAGGATGATTAGTAGAATGGGATTTTCAGTGGGGATTCCATTGTTGATAGGGCTTTTGTTCTTCCCATTCTTCTATTACCTCAAAGTTGGGCTGAAGATTGATGTGCCCTCATGGGTGCCAGTTATAGTCTCATTCTTCTTCTTTGGTTCAGCTTTGTTGGGAGTTAGCTATGGGATTGTGTCCTCTAGTTGGGATCCTATGAGGGAAGGCTCTCTGTTGGGTTGGAATGAAGCTCAAAAGAATTGGCCTGTTTTTTGGCAGTCCATTTGGGGTGGATCTAATAAGAAATAG

mRNA sequence

ATGAATCACTCAACGATTTTAAATGCAACATTGAGACGTCCGAAGGGATTCGGACCAGCTCCAAGGAGGAAAAAGACAAAGAAAACAAAAGGAGAAGGAAGCGAGGACGAAGACGAAAACGAAGAAGACGAAGAAGAAGAAGAGGAAGGTGGTGTAATACCAGAAGTAGTGACAAACAGGATGATTAGTAGAATGGGATTTTCAGTGGGGATTCCATTGTTGATAGGGCTTTTGTTCTTCCCATTCTTCTATTACCTCAAAGTTGGGCTGAAGATTGATGTGCCCTCATGGGTGCCAGTTATAGTCTCATTCTTCTTCTTTGGTTCAGCTTTGTTGGGAGTTAGCTATGGGATTGTGTCCTCTAGTTGGGATCCTATGAGGGAAGGCTCTCTGTTGGGTTGGAATGAAGCTCAAAAGAATTGGCCTGTTTTTTGGCAGTCCATTTGGGGTGGATCTAATAAGAAATAG

Coding sequence (CDS)

ATGAATCACTCAACGATTTTAAATGCAACATTGAGACGTCCGAAGGGATTCGGACCAGCTCCAAGGAGGAAAAAGACAAAGAAAACAAAAGGAGAAGGAAGCGAGGACGAAGACGAAAACGAAGAAGACGAAGAAGAAGAAGAGGAAGGTGGTGTAATACCAGAAGTAGTGACAAACAGGATGATTAGTAGAATGGGATTTTCAGTGGGGATTCCATTGTTGATAGGGCTTTTGTTCTTCCCATTCTTCTATTACCTCAAAGTTGGGCTGAAGATTGATGTGCCCTCATGGGTGCCAGTTATAGTCTCATTCTTCTTCTTTGGTTCAGCTTTGTTGGGAGTTAGCTATGGGATTGTGTCCTCTAGTTGGGATCCTATGAGGGAAGGCTCTCTGTTGGGTTGGAATGAAGCTCAAAAGAATTGGCCTGTTTTTTGGCAGTCCATTTGGGGTGGATCTAATAAGAAATAG

Protein sequence

MNHSTILNATLRRPKGFGPAPRRKKTKKTKGEGSEDEDENEEDEEEEEEGGVIPEVVTNRMISRMGFSVGIPLLIGLLFFPFFYYLKVGLKIDVPSWVPVIVSFFFFGSALLGVSYGIVSSSWDPMREGSLLGWNEAQKNWPVFWQSIWGGSNKK

Homology

[Close]

BLAST of Cla008859 vs. Swiss-Prot
Match: PAM68_ARATH (Protein PAM68, chloroplastic OS=Arabidopsis thaliana GN=PAM68 PE=1 SV=1)

HSP 1 Score: 242.3 bits (617), Expect = 3.6e-63
Identity = 113/155 (72.90%), Postives = 131/155 (84.52%), Query Frame = 1


Query: 7   LNATLRRPKGFGPAPRR-KKTKKTK-----GEGSEDEDENEEDEEEEEEGGVIPEVVTNR 66
           L+AT+  PKGFGP P++ KK+KK K      E  +DEDE+++DEE+E E GVIPE+VTNR
Sbjct: 60  LHATMNSPKGFGPPPKKTKKSKKPKPGNQSDEDDDDEDEDDDDEEDERERGVIPEIVTNR 119

Query: 67  MISRMGFSVGIPLLIGLLFFPFFYYLKVGLKIDVPSWVPVIVSFFFFGSALLGVSYGIVS 126
           MISRMGF+VG+PL IGLLFFPFFYYLKVGLK+DVP+WVP IVSF FFG+AL GVSYGIVS
Sbjct: 120 MISRMGFTVGLPLFIGLLFFPFFYYLKVGLKVDVPTWVPFIVSFVFFGTALAGVSYGIVS 179

Query: 127 SSWDPMREGSLLGWNEAQKNWPVFWQSIWGGSNKK 156
           SSWDP+REGSLLGWNEA+KNWPVFWQS W  S+K+
Sbjct: 180 SSWDPLREGSLLGWNEAKKNWPVFWQSFWNSSDKR 214

[Close]

BLAST of Cla008859 vs. Swiss-Prot
Match: Y5278_ARATH (Uncharacterized protein PAM68-like OS=Arabidopsis thaliana GN=At5g52780 PE=2 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 3.1e-14
Identity = 40/115 (34.78%), Postives = 61/115 (53.04%), Query Frame = 1


Query: 32  EGSEDEDENEEDEEEEEEGGVIPEVVTNRMISRMGFSVGIPLLIGLLFFPFFYYLKVGLK 91
           + S   ++    + + E+   IP+ V  RM+ R+  SVG PL +G+        LK    
Sbjct: 51  QSSRTSEKPGRPDPDPEDDPPIPQEVFERMMGRIVVSVGTPLGLGVAILKVLEVLKDRNV 110

Query: 92  IDVPSWVPVIVSFFFFGSALLGVSYGIVSSSWDPMREGSLLGWNEAQKNWPVFWQ 147
            DVP WVP + +   FGS+ LG++YG +S++ DP +  SL G  EA++NW   W+
Sbjct: 111 WDVPLWVPYLTTLVTFGSSALGIAYGSLSTNLDPAKTNSLFGLKEAKENWVEMWK 165

[Close]

BLAST of Cla008859 vs. TrEMBL
Match: A0A0A0L507_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G006590 PE=4 SV=1)

HSP 1 Score: 290.8 bits (743), Expect = 9.7e-76
Identity = 140/157 (89.17%), Postives = 147/157 (93.63%), Query Frame = 1


Query: 2   NHSTILNATLRRPKGFGPAPRRKKTKKTKGEGSEDED---ENEEDEEEEEEGGVIPEVVT 61
           N  T LNATLRRPKGFGPA R+KKTKKT+ EGSED+D   E EEDEEEEEEGGVIPEVVT
Sbjct: 57  NRPTSLNATLRRPKGFGPASRKKKTKKTRREGSEDDDNEEEEEEDEEEEEEGGVIPEVVT 116

Query: 62  NRMISRMGFSVGIPLLIGLLFFPFFYYLKVGLKIDVPSWVPVIVSFFFFGSALLGVSYGI 121
           NRM+SRMGF+VGIPL IGLLFFPFFYYLKVGLKIDVPSWVPVIVSFFFFGSALLGVSYGI
Sbjct: 117 NRMMSRMGFTVGIPLFIGLLFFPFFYYLKVGLKIDVPSWVPVIVSFFFFGSALLGVSYGI 176

Query: 122 VSSSWDPMREGSLLGWNEAQKNWPVFWQSIWGGSNKK 156
           VSSSWDP+REGSLLGWNEAQKNWPVFW+SIWGGSNKK
Sbjct: 177 VSSSWDPLREGSLLGWNEAQKNWPVFWKSIWGGSNKK 213

[Close]

BLAST of Cla008859 vs. TrEMBL
Match: A0A061GE46_THECC (PAM68, chloroplastic, putative isoform 3 OS=Theobroma cacao GN=TCM_016667 PE=4 SV=1)

HSP 1 Score: 251.9 bits (642), Expect = 5.0e-64
Identity = 122/152 (80.26%), Postives = 137/152 (90.13%), Query Frame = 1


Query: 7   LNATLRRPKGFGPAPRR-KKTKKTK-GEGSEDEDENEEDEEE-EEEGGVIPEVVTNRMIS 66
           L ATL  P+GFGP P++ KKTKK+K G+  E+ED+++E+EEE E E GVIPE+VTNRMIS
Sbjct: 88  LYATLNSPRGFGPPPKKNKKTKKSKSGDVKEEEDDDDEEEEEFEPEAGVIPEIVTNRMIS 147

Query: 67  RMGFSVGIPLLIGLLFFPFFYYLKVGLKIDVPSWVPVIVSFFFFGSALLGVSYGIVSSSW 126
           RMGFSVG+PL IGLLFFPFFYYLKV LKIDVP+WVP IVSFFFFG+ALLGVSYGIVSSSW
Sbjct: 148 RMGFSVGVPLFIGLLFFPFFYYLKVVLKIDVPTWVPFIVSFFFFGTALLGVSYGIVSSSW 207

Query: 127 DPMREGSLLGWNEAQKNWPVFWQSIWGGSNKK 156
           DP+REGSLLGWNEAQKNWPVFWQSIWGGS KK
Sbjct: 208 DPLREGSLLGWNEAQKNWPVFWQSIWGGSRKK 239

[Close]

BLAST of Cla008859 vs. TrEMBL
Match: A5AD85_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_16s0022g00630 PE=4 SV=1)

HSP 1 Score: 251.1 bits (640), Expect = 8.6e-64
Identity = 123/155 (79.35%), Postives = 134/155 (86.45%), Query Frame = 1


Query: 3   HSTILNATLRRPKGFGPAPRR-KKTKKTKGEGSEDEDENEEDEE-EEEEGGVIPEVVTNR 62
           HST   A+L RPKGFGP+PR+ +K KK K   S+DEDE EE+EE  E E GVIPE+VTNR
Sbjct: 42  HSTPPCASLNRPKGFGPSPRKTEKRKKLKKNYSDDEDEEEEEEEGAEAEEGVIPEIVTNR 101

Query: 63  MISRMGFSVGIPLLIGLLFFPFFYYLKVGLKIDVPSWVPVIVSFFFFGSALLGVSYGIVS 122
           MISRMGFSVGIPL+IGLLFFPFFYYLKVGLKIDVP+WVP IVSFFFFGSALLGVSYGIVS
Sbjct: 102 MISRMGFSVGIPLMIGLLFFPFFYYLKVGLKIDVPTWVPFIVSFFFFGSALLGVSYGIVS 161

Query: 123 SSWDPMREGSLLGWNEAQKNWPVFWQSIWGGSNKK 156
           SSWDP+REGS LGW EAQ NWPVFWQS+WG S KK
Sbjct: 162 SSWDPLREGSFLGWTEAQNNWPVFWQSLWGRSGKK 196

[Close]

BLAST of Cla008859 vs. TrEMBL
Match: A0A068V2P5_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00042427001 PE=4 SV=1)

HSP 1 Score: 251.1 bits (640), Expect = 8.6e-64
Identity = 113/152 (74.34%), Postives = 136/152 (89.47%), Query Frame = 1


Query: 5   TILNATLRRPKGFGPAPRR-KKTKKTKGEGSEDEDENEEDEEEEEEGGVIPEVVTNRMIS 64
           T ++ATL  P+GFGP+P++ KKTK  K +  E+ED+++++EEE+ E G+IPE+VTNRM+S
Sbjct: 46  TSISATLNTPRGFGPSPKKAKKTKTPKKDYDEEEDDDDDEEEEDREEGIIPEIVTNRMMS 105

Query: 65  RMGFSVGIPLLIGLLFFPFFYYLKVGLKIDVPSWVPVIVSFFFFGSALLGVSYGIVSSSW 124
           RMGFSVG+PL IGLLFFPFFYYLKVGLKIDVP+W+P IVSF FFG+ALLGVSYGIVSSSW
Sbjct: 106 RMGFSVGVPLFIGLLFFPFFYYLKVGLKIDVPTWIPFIVSFIFFGTALLGVSYGIVSSSW 165

Query: 125 DPMREGSLLGWNEAQKNWPVFWQSIWGGSNKK 156
           DP+REGS LGWNEAQKNWPVFWQSIWGG +KK
Sbjct: 166 DPLREGSFLGWNEAQKNWPVFWQSIWGGGSKK 197

[Close]

BLAST of Cla008859 vs. TrEMBL
Match: A0A0B0NVC2_GOSAR (Protein PAM68, chloroplastic-like protein OS=Gossypium arboreum GN=F383_22471 PE=4 SV=1)

HSP 1 Score: 250.8 bits (639), Expect = 1.1e-63
Identity = 119/150 (79.33%), Postives = 133/150 (88.67%), Query Frame = 1


Query: 7   LNATLRRPKGFGPAPR-RKKTKKTKGEGSEDEDENEEDEEEEEEGGVIPEVVTNRMISRM 66
           L+ATL  PKGFG  P+  KKTKK+K  G +D +E EE+EE E E GVIPEVVTNRMISRM
Sbjct: 55  LHATLNSPKGFGSPPKNNKKTKKSK-SGGDDNEEEEEEEENEAEAGVIPEVVTNRMISRM 114

Query: 67  GFSVGIPLLIGLLFFPFFYYLKVGLKIDVPSWVPVIVSFFFFGSALLGVSYGIVSSSWDP 126
           GF+VGIPLL+GLLFFPFFYYLKVGLKIDVP+WVP IVSF FFG+ALLGVSYGIVSSSWDP
Sbjct: 115 GFTVGIPLLVGLLFFPFFYYLKVGLKIDVPTWVPFIVSFIFFGTALLGVSYGIVSSSWDP 174

Query: 127 MREGSLLGWNEAQKNWPVFWQSIWGGSNKK 156
           +REGS+LGWNEAQKNWPVFWQSIWGG ++K
Sbjct: 175 LREGSVLGWNEAQKNWPVFWQSIWGGGSRK 203

[Close]

BLAST of Cla008859 vs. NCBI nr
Match: gi|659095484|ref|XP_008448605.1| (PREDICTED: protein PAM68, chloroplastic isoform X2 [Cucumis melo])

HSP 1 Score: 293.5 bits (750), Expect = 2.2e-76
Identity = 141/162 (87.04%), Postives = 148/162 (91.36%), Query Frame = 1


Query: 2   NHSTILNATLRRPKGFGPAPRRKKTKKTKGEGSEDEDENEEDEE--------EEEEGGVI 61
           NH T LNATLRRPKGFGPAPR+KK KKTKGEG ED+D +E++EE        EEEEGGVI
Sbjct: 55  NHPTSLNATLRRPKGFGPAPRKKKMKKTKGEGREDDDNDEDEEEDNEEEEDNEEEEGGVI 114

Query: 62  PEVVTNRMISRMGFSVGIPLLIGLLFFPFFYYLKVGLKIDVPSWVPVIVSFFFFGSALLG 121
           PEVVTNRM+SRMGF+VGIPL IGLLFFPFFYYLKVGLKIDVPSWVPVIVSFFFFGSALLG
Sbjct: 115 PEVVTNRMMSRMGFTVGIPLFIGLLFFPFFYYLKVGLKIDVPSWVPVIVSFFFFGSALLG 174

Query: 122 VSYGIVSSSWDPMREGSLLGWNEAQKNWPVFWQSIWGGSNKK 156
           VSYGIVSSSWDPMREGSLLGWNEAQKNWPVFWQSIWGGSNKK
Sbjct: 175 VSYGIVSSSWDPMREGSLLGWNEAQKNWPVFWQSIWGGSNKK 216

[Close]

BLAST of Cla008859 vs. NCBI nr
Match: gi|659095482|ref|XP_008448604.1| (PREDICTED: protein PAM68, chloroplastic isoform X1 [Cucumis melo])

HSP 1 Score: 293.5 bits (750), Expect = 2.2e-76
Identity = 141/162 (87.04%), Postives = 148/162 (91.36%), Query Frame = 1


Query: 2   NHSTILNATLRRPKGFGPAPRRKKTKKTKGEGSEDEDENEEDEE--------EEEEGGVI 61
           NH T LNATLRRPKGFGPAPR+KK KKTKGEG ED+D +E++EE        EEEEGGVI
Sbjct: 56  NHPTSLNATLRRPKGFGPAPRKKKMKKTKGEGREDDDNDEDEEEDNEEEEDNEEEEGGVI 115

Query: 62  PEVVTNRMISRMGFSVGIPLLIGLLFFPFFYYLKVGLKIDVPSWVPVIVSFFFFGSALLG 121
           PEVVTNRM+SRMGF+VGIPL IGLLFFPFFYYLKVGLKIDVPSWVPVIVSFFFFGSALLG
Sbjct: 116 PEVVTNRMMSRMGFTVGIPLFIGLLFFPFFYYLKVGLKIDVPSWVPVIVSFFFFGSALLG 175

Query: 122 VSYGIVSSSWDPMREGSLLGWNEAQKNWPVFWQSIWGGSNKK 156
           VSYGIVSSSWDPMREGSLLGWNEAQKNWPVFWQSIWGGSNKK
Sbjct: 176 VSYGIVSSSWDPMREGSLLGWNEAQKNWPVFWQSIWGGSNKK 217

[Close]

BLAST of Cla008859 vs. NCBI nr
Match: gi|449456765|ref|XP_004146119.1| (PREDICTED: protein PAM68, chloroplastic isoform X2 [Cucumis sativus])

HSP 1 Score: 290.8 bits (743), Expect = 1.4e-75
Identity = 140/157 (89.17%), Postives = 147/157 (93.63%), Query Frame = 1


Query: 2   NHSTILNATLRRPKGFGPAPRRKKTKKTKGEGSEDED---ENEEDEEEEEEGGVIPEVVT 61
           N  T LNATLRRPKGFGPA R+KKTKKT+ EGSED+D   E EEDEEEEEEGGVIPEVVT
Sbjct: 57  NRPTSLNATLRRPKGFGPASRKKKTKKTRREGSEDDDNEEEEEEDEEEEEEGGVIPEVVT 116

Query: 62  NRMISRMGFSVGIPLLIGLLFFPFFYYLKVGLKIDVPSWVPVIVSFFFFGSALLGVSYGI 121
           NRM+SRMGF+VGIPL IGLLFFPFFYYLKVGLKIDVPSWVPVIVSFFFFGSALLGVSYGI
Sbjct: 117 NRMMSRMGFTVGIPLFIGLLFFPFFYYLKVGLKIDVPSWVPVIVSFFFFGSALLGVSYGI 176

Query: 122 VSSSWDPMREGSLLGWNEAQKNWPVFWQSIWGGSNKK 156
           VSSSWDP+REGSLLGWNEAQKNWPVFW+SIWGGSNKK
Sbjct: 177 VSSSWDPLREGSLLGWNEAQKNWPVFWKSIWGGSNKK 213

[Close]

BLAST of Cla008859 vs. NCBI nr
Match: gi|778674883|ref|XP_011650314.1| (PREDICTED: protein PAM68, chloroplastic isoform X1 [Cucumis sativus])

HSP 1 Score: 290.8 bits (743), Expect = 1.4e-75
Identity = 140/157 (89.17%), Postives = 147/157 (93.63%), Query Frame = 1


Query: 2   NHSTILNATLRRPKGFGPAPRRKKTKKTKGEGSEDED---ENEEDEEEEEEGGVIPEVVT 61
           N  T LNATLRRPKGFGPA R+KKTKKT+ EGSED+D   E EEDEEEEEEGGVIPEVVT
Sbjct: 58  NRPTSLNATLRRPKGFGPASRKKKTKKTRREGSEDDDNEEEEEEDEEEEEEGGVIPEVVT 117

Query: 62  NRMISRMGFSVGIPLLIGLLFFPFFYYLKVGLKIDVPSWVPVIVSFFFFGSALLGVSYGI 121
           NRM+SRMGF+VGIPL IGLLFFPFFYYLKVGLKIDVPSWVPVIVSFFFFGSALLGVSYGI
Sbjct: 118 NRMMSRMGFTVGIPLFIGLLFFPFFYYLKVGLKIDVPSWVPVIVSFFFFGSALLGVSYGI 177

Query: 122 VSSSWDPMREGSLLGWNEAQKNWPVFWQSIWGGSNKK 156
           VSSSWDP+REGSLLGWNEAQKNWPVFW+SIWGGSNKK
Sbjct: 178 VSSSWDPLREGSLLGWNEAQKNWPVFWKSIWGGSNKK 214

[Close]

BLAST of Cla008859 vs. NCBI nr
Match: gi|747089912|ref|XP_011092614.1| (PREDICTED: protein PAM68, chloroplastic [Sesamum indicum])

HSP 1 Score: 259.6 bits (662), Expect = 3.5e-66
Identity = 127/158 (80.38%), Postives = 137/158 (86.71%), Query Frame = 1


Query: 3   HSTILNATLRRPKGFGPAPRR-KKTKKTKGEGSEDEDENEEDEEEEEEG----GVIPEVV 62
           H T L+ATL  PKGFGP P++ KK+KK+K     DE+E EE+EEEEEE     GVIPEVV
Sbjct: 43  HITPLSATLNSPKGFGPTPKKVKKSKKSKKNYESDEEEEEEEEEEEEEDDREEGVIPEVV 102

Query: 63  TNRMISRMGFSVGIPLLIGLLFFPFFYYLKVGLKIDVPSWVPVIVSFFFFGSALLGVSYG 122
           TNRMISRMGFSVGIPL IGLLFFPFFYYLKVGLKIDVP+WVP IVSF FFG+ALLGVSYG
Sbjct: 103 TNRMISRMGFSVGIPLFIGLLFFPFFYYLKVGLKIDVPTWVPFIVSFIFFGTALLGVSYG 162

Query: 123 IVSSSWDPMREGSLLGWNEAQKNWPVFWQSIWGGSNKK 156
           IVS+SWDPMREGSLLGWNEAQKNWPVFWQSIWGGS KK
Sbjct: 163 IVSASWDPMREGSLLGWNEAQKNWPVFWQSIWGGSKKK 200

The following BLAST results are available for this feature:

BLAST of Cla008859 vs. Swiss-Prot


Match Name	E-value	Identity	Description
PAM68_ARATH	3.6e-63	72.90	Protein PAM68, chloroplastic OS=Arabidopsis thaliana GN=PAM68 PE=1 SV=1	[more]
Y5278_ARATH	3.1e-14	34.78	Uncharacterized protein PAM68-like OS=Arabidopsis thaliana GN=At5g52780 PE=2 SV=...	[more]

BLAST of Cla008859 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L507_CUCSA	9.7e-76	89.17	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G006590 PE=4 SV=1	[more]
A0A061GE46_THECC	5.0e-64	80.26	PAM68, chloroplastic, putative isoform 3 OS=Theobroma cacao GN=TCM_016667 PE=4 S...	[more]
A5AD85_VITVI	8.6e-64	79.35	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_16s0022g00630 PE=4 SV=...	[more]
A0A068V2P5_COFCA	8.6e-64	74.34	Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00042427001 PE=4 SV=1	[more]
A0A0B0NVC2_GOSAR	1.1e-63	79.33	Protein PAM68, chloroplastic-like protein OS=Gossypium arboreum GN=F383_22471 PE...	[more]

BLAST of Cla008859 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659095484\|ref\|XP_008448605.1\|	2.2e-76	87.04	PREDICTED: protein PAM68, chloroplastic isoform X2 [Cucumis melo]	[more]
gi\|659095482\|ref\|XP_008448604.1\|	2.2e-76	87.04	PREDICTED: protein PAM68, chloroplastic isoform X1 [Cucumis melo]	[more]
gi\|449456765\|ref\|XP_004146119.1\|	1.4e-75	89.17	PREDICTED: protein PAM68, chloroplastic isoform X2 [Cucumis sativus]	[more]
gi\|778674883\|ref\|XP_011650314.1\|	1.4e-75	89.17	PREDICTED: protein PAM68, chloroplastic isoform X1 [Cucumis sativus]	[more]
gi\|747089912\|ref\|XP_011092614.1\|	3.5e-66	80.38	PREDICTED: protein PAM68, chloroplastic [Sesamum indicum]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR021855	PAM68-like

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016556	mRNA modification
biological_process	GO:0010207	photosystem II assembly
biological_process	GO:0044237	cellular metabolic process
biological_process	GO:0006265	DNA topological change
biological_process	GO:0008150	biological_process
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003918	DNA topoisomerase type II (ATP-hydrolyzing) activity

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
WMU04879	watermelon unigene v2 vs TrEMBL	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla008859	Cla008859.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
WMU04879	WMU04879	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR021855	Protein of unknown function DUF3464	PFAM	PF11947	DUF3464	coord: 23..147 score: 3.2
None	No IPR available	PANTHER	PTHR34575	FAMILY NOT NAMED	coord: 1..155 score: 1.1
None	No IPR available	PANTHER	PTHR34575:SF2	SUBFAMILY NOT NAMED	coord: 1..155 score: 1.1

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla008859	Cla97C10G185700	Watermelon (97103) v2	wmwmbB056
Cla008859	Csa3G006590	Cucumber (Chinese Long) v2	cuwmB200
Cla008859	MELO3C013801	Melon (DHL92) v3.5.1	mewmB446
Cla008859	ClCG10G001090	Watermelon (Charleston Gray)	wcgwmB056
Cla008859	CSPI03G01080	Wild cucumber (PI 183967)	cpiwmB200
Cla008859	Cucsa.322300	Cucumber (Gy14) v1	cgywmB583
Cla008859	CmaCh06G006070	Cucurbita maxima (Rimu)	cmawmB789
Cla008859	CmoCh06G006130	Cucurbita moschata (Rifu)	cmowmB783
Cla008859	Lsi07G011410	Bottle gourd (USVL1VR-Ls)	lsiwmB429
Cla008859	Cp4.1LG08g08940	Cucurbita pepo (Zucchini)	cpewmB829
Cla008859	CsGy3G001020	Cucumber (Gy14) v2	cgybwmB188
Cla008859	MELO3C013801.2	Melon (DHL92) v3.6.1	medwmB438
Cla008859	Carg16294	Silver-seed gourd	carwmB0678
Cla008859	CsaV3_3G001110	Cucumber (Chinese Long) v3	cucwmB209
Cla008859	BhiUN403G8	Wax gourd	wgowmB576

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla008859	Silver-seed gourd	carwmB1049
Cla008859	Cucurbita maxima (Rimu)	cmawmB292
Cla008859	Cucurbita moschata (Rifu)	cmowmB285
Cla008859	Cucurbita pepo (Zucchini)	cpewmB202