BhiUN403G8 (gene) Wax gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	BhiUN403G8
Type	gene
Organism	Benincasa hispida (Wax gourd)
Description	protein PAM68, chloroplastic-like
Location	Contig403 : 245770 .. 247831 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CCCGAAATGCTTTAGGAATCCAAACAAGCTTCCGCCAATTCGACGCAAAATTTTGATTGCTAACCAAAAGAAAACCTTATCCTCTTTCCCTGCTCTCATCCATGGCGTCCGTCCCTGCTTCGCGCAGTGAGGGCAAAATGTAAGAGACGAGCCGACTGTGTTTCAGTTTCAGTGACAAACCCTAATGGCCGCCATTTCCGGATCTCTCAACCTTCCTCTTGCGCCGTCAAACCTTTCATCACCCCGCATTAAGGTACTCACCTCCCGATTGCAATTTTTTTTTTTGAGTTCTGTAAAAACCTTTTCAACTATAACTTCTTCGAATTATACCTAAACGATGAAGGATTTTCTTATCTGAACTGTTCATCAATGGATTTTCCATAAGTTCGTCAATCAACAATCGGTTTCTTAAACATTAGGAGTTAGGATTTAGGAGTTACTTTACCAGGGATACTTGTAAAACCTAGAACGATCCGTTGATCCATTTCAATGATAACTAACTACTTGAATTATGTTGAAATGAAAGAAGACGAAGGATTCTTTAACTAAACTCTTGATCAATCGAATTTTGATTTCGATTAGTAGTTTGGATTTAGGATTGATATTTGTAAAACCGAGAACGATCCATCGATCTAGTCCAATGAGAACTCCTTGAATGTTGAATTATACTGAAGCGGAAGGAAGACGAAGGATTTTTTAATCTGAACTGTTTATCAACCGATTTTCCATTTTGATTAATTTCCAAATATTAGGAGTTAGGCCAAAGTAGCTCAACTGATGTGTTAGAGGTAGGTGTTTTAAATTCTCTATCTTGATTGTAGTAAAAAAACATTAAGAGTTAGGTTAGTTTTGAAAAATAATTGATTGTAAGAATAAGTGGTTTACTTCTAACTTATTACTGGGTTTTGAGAAAATATTAAAAGAATAATTGTCTGACATCCAAGCACTATAAAAGAATCTACTAATTTCAAGTTGTCTGAGTTAGAAACACTTTAAACTTGAGAACTCCAACTCTTATTAAAGTTCTTTTTGTATTCTCTAGTTTGAGAGTGGAAAAACTCATAGATTTCGATAGAAAGTTTTCTATGTAAATTCTTATATTTAACTCAATTATGTTCCGCTTACTCCTGCAGTAATGATGGGAGTTTTTTTTCCATAGCATTGATACTTGTTAAACCTAGGGCGATTCTTTGATCCATTTCGATTACTAGGCAAATATCTATTTGTTATGCAGAGAAATTGTAAAATCTCGATCCATTTGAAAAGCTACGAAAGGAACTGTTTCCCAAAATTGATACCAAGCATTAACCAAAGACGAATTCACACGAACCAATCCACGACTTTAAATGCAACATTGAGACGTCAGAAGGGATTCGGACCAGCTCCAAGGAGGAAGAAGATGAAGAAAACAAAAAGAGAAGGAAGTGAAGACGAGCATGGGGATGAAGATGAAGACGAAGAAGAAGAGGAAGGTGGTGTAATACCAGAAGTAGTGACGAACAGGATGATAAGTAGAATGGGATTTTCAGTGGGGATTCCATTGTTGATAGGGCTTTTGTTCTTCCCATTCTTCTATTACCTCAAAGTTGTGCTGAAAATTGATGTGCCCTCATGGGTGCCAGTTATAGTCTCATTCTTCTTCTTTGGCTCAGCTTTGTTGGGAGTTAGCTATGGGATTGTGTCCTCTAGTTGGGATCCTATGAGGGAAGGCTCTCTATTGGGTTGGAACGAAGCTCAGAAGAATTGGCCTGTCTTTTGGCAGTCCCTTTGGGGTGGATCTAATAAGAAATAGATGAATTTGCTTTCTTTTTTATAAATATTATGGTTTTCAAGTTATATGAGTTATATGAGAAGCCAAAGCGAGTATAACTAATCTCACATATTCATACGGTAAGAGATTTGTAGTTTGAATCTTCTCATCCTTGTACTAAAAATAGTTTATGAGAAGTAAGGTTGCTTGTAAACAGATGAAGAGATAGGTGTTTTAGATTTTTTTTACGGATATTATTGCCTCGATTAAATTATAAGTTTAATTTTTGATATTTAATTATTTTGGTTAAAA

mRNA sequence

CCCGAAATGCTTTAGGAATCCAAACAAGCTTCCGCCAATTCGACGCAAAATTTTGATTGCTAACCAAAAGAAAACCTTATCCTCTTTCCCTGCTCTCATCCATGGCGTCCGTCCCTGCTTCGCGCAGTGAGGGCAAAATGTAAGAGACGAGCCGACTGTGTTTCAGTTTCAGTGACAAACCCTAATGGCCGCCATTTCCGGATCTCTCAACCTTCCTCTTGCGCCGTCAAACCTTTCATCACCCCGCATTAAGAGAAATTGTAAAATCTCGATCCATTTGAAAAGCTACGAAAGGAACTGTTTCCCAAAATTGATACCAAGCATTAACCAAAGACGAATTCACACGAACCAATCCACGACTTTAAATGCAACATTGAGACGTCAGAAGGGATTCGGACCAGCTCCAAGGAGGAAGAAGATGAAGAAAACAAAAAGAGAAGGAAGTGAAGACGAGCATGGGGATGAAGATGAAGACGAAGAAGAAGAGGAAGGTGGTGTAATACCAGAAGTAGTGACGAACAGGATGATAAGTAGAATGGGATTTTCAGTGGGGATTCCATTGTTGATAGGGCTTTTGTTCTTCCCATTCTTCTATTACCTCAAAGTTGTGCTGAAAATTGATGTGCCCTCATGGGTGCCAGTTATAGTCTCATTCTTCTTCTTTGGCTCAGCTTTGTTGGGAGTTAGCTATGGGATTGTGTCCTCTAGTTGGGATCCTATGAGGGAAGGCTCTCTATTGGGTTGGAACGAAGCTCAGAAGAATTGGCCTGTCTTTTGGCAGTCCCTTTGGGGTGGATCTAATAAGAAATAGATGAATTTGCTTTCTTTTTTATAAATATTATGGTTTTCAAGTTATATGAGTTATATGAGAAGCCAAAGCGAGTATAACTAATCTCACATATTCATACGGTAAGAGATTTGTAGTTTGAATCTTCTCATCCTTGTACTAAAAATAGTTTATGAGAAGTAAGGTTGCTTGTAAACAGATGAAGAGATAGGTGTTTTAGATTTTTTTTACGGATATTATTGCCTCGATTAAATTATAAGTTTAATTTTTGATATTTAATTATTTTGGTTAAAA

Coding sequence (CDS)

ATGGCCGCCATTTCCGGATCTCTCAACCTTCCTCTTGCGCCGTCAAACCTTTCATCACCCCGCATTAAGAGAAATTGTAAAATCTCGATCCATTTGAAAAGCTACGAAAGGAACTGTTTCCCAAAATTGATACCAAGCATTAACCAAAGACGAATTCACACGAACCAATCCACGACTTTAAATGCAACATTGAGACGTCAGAAGGGATTCGGACCAGCTCCAAGGAGGAAGAAGATGAAGAAAACAAAAAGAGAAGGAAGTGAAGACGAGCATGGGGATGAAGATGAAGACGAAGAAGAAGAGGAAGGTGGTGTAATACCAGAAGTAGTGACGAACAGGATGATAAGTAGAATGGGATTTTCAGTGGGGATTCCATTGTTGATAGGGCTTTTGTTCTTCCCATTCTTCTATTACCTCAAAGTTGTGCTGAAAATTGATGTGCCCTCATGGGTGCCAGTTATAGTCTCATTCTTCTTCTTTGGCTCAGCTTTGTTGGGAGTTAGCTATGGGATTGTGTCCTCTAGTTGGGATCCTATGAGGGAAGGCTCTCTATTGGGTTGGAACGAAGCTCAGAAGAATTGGCCTGTCTTTTGGCAGTCCCTTTGGGGTGGATCTAATAAGAAATAG

Protein sequence

MAAISGSLNLPLAPSNLSSPRIKRNCKISIHLKSYERNCFPKLIPSINQRRIHTNQSTTLNATLRRQKGFGPAPRRKKMKKTKREGSEDEHGDEDEDEEEEEGGVIPEVVTNRMISRMGFSVGIPLLIGLLFFPFFYYLKVVLKIDVPSWVPVIVSFFFFGSALLGVSYGIVSSSWDPMREGSLLGWNEAQKNWPVFWQSLWGGSNKK

Homology

[Close]

BLAST of BhiUN403G8 vs. TAIR10
Match: AT4G19100.1 (Protein of unknown function (DUF3464))

HSP 1 Score: 189.5 bits (480), Expect = 2.1e-48
Identity = 130/183 (71.04%), Postives = 148/183 (80.87%), Query Frame = 0


Query: 32  LKSYERNCFPKLIPSINQRRIHTNQSTTLNATLRRQKGFGP------APXXXXXXXXXXX 91
           L+   ++  PK I  IN  R+  ++   L+AT+   KGFGP        XXXXXXXXXXX
Sbjct: 34  LRDKTKSQVPKSITCIN--RLEISRIAPLHATMNSPKGFGPPXXXXXXXXXXXXXXXXXX 93

Query: 92  XXXXXXXXXXXXXXXXXXXVIPEVVTNRMISRMGFSVGIPLLIGLLFFPFFYYLKVVLKI 151
           XXXXXXXXXXXXXXXXXX VIPE+VTNRMISRMGF+VG+PL IGLLFFPFFYYLKV LK+
Sbjct: 94  XXXXXXXXXXXXXXXXXXGVIPEIVTNRMISRMGFTVGLPLFIGLLFFPFFYYLKVGLKV 153

Query: 152 DVPSWVPVIVSFFFFGSALLGVSYGIVSSSWDPMREGSLLGWNEAQKNWPVFWQSLWGGS 209
           DVP+WVP IVSF FFG+AL GVSYGIVSSSWDP+REGSLLGWNEA+KNWPVFWQS W  S
Sbjct: 154 DVPTWVPFIVSFVFFGTALAGVSYGIVSSSWDPLREGSLLGWNEAKKNWPVFWQSFWNSS 213

[Close]

BLAST of BhiUN403G8 vs. TAIR10
Match: AT5G52780.1 (Protein of unknown function (DUF3464))

HSP 1 Score: 71.6 bits (174), Expect = 6.3e-13
Identity = 38/94 (40.43%), Postives = 55/94 (58.51%), Query Frame = 0


Query: 106 IPEVVTNRMISRMGFSVGIPLLIGLLFFPFFYYLKVVLKIDVPSWVPVIVSFFFFGSALL 165
           IP+ V  RM+ R+  SVG PL +G+        LK     DVP WVP + +   FGS+ L
Sbjct: 72  IPQEVFERMMGRIVVSVGTPLGLGVAILKVLEVLKDRNVWDVPLWVPYLTTLVTFGSSAL 131

Query: 166 GVSYGIVSSSWDPMREGSLLGWNEAQKNWPVFWQ 200
           G++YG +S++ DP +  SL G  EA++NW   W+
Sbjct: 132 GIAYGSLSTNLDPAKTNSLFGLKEAKENWVEMWK 165

[Close]

BLAST of BhiUN403G8 vs. Swiss-Prot
Match: sp|O49668|PAM68_ARATH (Protein PAM68, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PAM68 PE=1 SV=1)

HSP 1 Score: 189.5 bits (480), Expect = 3.7e-47
Identity = 130/183 (71.04%), Postives = 148/183 (80.87%), Query Frame = 0


Query: 32  LKSYERNCFPKLIPSINQRRIHTNQSTTLNATLRRQKGFGP------APXXXXXXXXXXX 91
           L+   ++  PK I  IN  R+  ++   L+AT+   KGFGP        XXXXXXXXXXX
Sbjct: 34  LRDKTKSQVPKSITCIN--RLEISRIAPLHATMNSPKGFGPPXXXXXXXXXXXXXXXXXX 93

Query: 92  XXXXXXXXXXXXXXXXXXXVIPEVVTNRMISRMGFSVGIPLLIGLLFFPFFYYLKVVLKI 151
           XXXXXXXXXXXXXXXXXX VIPE+VTNRMISRMGF+VG+PL IGLLFFPFFYYLKV LK+
Sbjct: 94  XXXXXXXXXXXXXXXXXXGVIPEIVTNRMISRMGFTVGLPLFIGLLFFPFFYYLKVGLKV 153

Query: 152 DVPSWVPVIVSFFFFGSALLGVSYGIVSSSWDPMREGSLLGWNEAQKNWPVFWQSLWGGS 209
           DVP+WVP IVSF FFG+AL GVSYGIVSSSWDP+REGSLLGWNEA+KNWPVFWQS W  S
Sbjct: 154 DVPTWVPFIVSFVFFGTALAGVSYGIVSSSWDPLREGSLLGWNEAKKNWPVFWQSFWNSS 213

[Close]

BLAST of BhiUN403G8 vs. Swiss-Prot
Match: sp|Q9LTD9|Y5278_ARATH (Uncharacterized protein PAM68-like OS=Arabidopsis thaliana OX=3702 GN=At5g52780 PE=2 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 1.1e-11
Identity = 38/94 (40.43%), Postives = 55/94 (58.51%), Query Frame = 0


Query: 106 IPEVVTNRMISRMGFSVGIPLLIGLLFFPFFYYLKVVLKIDVPSWVPVIVSFFFFGSALL 165
           IP+ V  RM+ R+  SVG PL +G+        LK     DVP WVP + +   FGS+ L
Sbjct: 72  IPQEVFERMMGRIVVSVGTPLGLGVAILKVLEVLKDRNVWDVPLWVPYLTTLVTFGSSAL 131

Query: 166 GVSYGIVSSSWDPMREGSLLGWNEAQKNWPVFWQ 200
           G++YG +S++ DP +  SL G  EA++NW   W+
Sbjct: 132 GIAYGSLSTNLDPAKTNSLFGLKEAKENWVEMWK 165

[Close]

BLAST of BhiUN403G8 vs. TrEMBL
Match: tr|A0A1S3BKY8|A0A1S3BKY8_CUCME (protein PAM68, chloroplastic isoform X2 OS=Cucumis melo OX=3656 GN=LOC103490730 PE=4 SV=1)

HSP 1 Score: 292.0 bits (746), Expect = 1.1e-75
Identity = 182/216 (84.26%), Postives = 192/216 (88.89%), Query Frame = 0


Query: 1   MAAISGSLNLPLAPSNLSSPRIKRNCKISIHLKSYERNCFPKLIPSINQRRIHTNQSTTL 60
           MAAI+GSLNLPLAPSNL   RIK+NC+ SIH+KSYERNCFP   P+INQ +  TN  T+L
Sbjct: 1   MAAIAGSLNLPLAPSNLPLLRIKKNCEFSIHIKSYERNCFPNFRPTINQNQTRTNHPTSL 60

Query: 61  NATLRRQKGFGPA--------PXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVIPEVVTN 120
           NATLRR KGFGPA         XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVIPEVVTN
Sbjct: 61  NATLRRPKGFGPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVIPEVVTN 120

Query: 121 RMISRMGFSVGIPLLIGLLFFPFFYYLKVVLKIDVPSWVPVIVSFFFFGSALLGVSYGIV 180
           RM+SRMGF+VGIPL IGLLFFPFFYYLKV LKIDVPSWVPVIVSFFFFGSALLGVSYGIV
Sbjct: 121 RMMSRMGFTVGIPLFIGLLFFPFFYYLKVGLKIDVPSWVPVIVSFFFFGSALLGVSYGIV 180

Query: 181 SSSWDPMREGSLLGWNEAQKNWPVFWQSLWGGSNKK 209
           SSSWDPMREGSLLGWNEAQKNWPVFWQS+WGGSNKK
Sbjct: 181 SSSWDPMREGSLLGWNEAQKNWPVFWQSIWGGSNKK 216

[Close]

BLAST of BhiUN403G8 vs. TrEMBL
Match: tr|A0A1S3BKQ0|A0A1S3BKQ0_CUCME (protein PAM68, chloroplastic isoform X1 OS=Cucumis melo OX=3656 GN=LOC103490730 PE=4 SV=1)

HSP 1 Score: 287.3 bits (734), Expect = 2.7e-74
Identity = 182/217 (83.87%), Postives = 192/217 (88.48%), Query Frame = 0


Query: 1   MAAISGSLNLPLAPSNLSSPRIK-RNCKISIHLKSYERNCFPKLIPSINQRRIHTNQSTT 60
           MAAI+GSLNLPLAPSNL   RIK +NC+ SIH+KSYERNCFP   P+INQ +  TN  T+
Sbjct: 1   MAAIAGSLNLPLAPSNLPLLRIKQKNCEFSIHIKSYERNCFPNFRPTINQNQTRTNHPTS 60

Query: 61  LNATLRRQKGFGPA--------PXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVIPEVVT 120
           LNATLRR KGFGPA         XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVIPEVVT
Sbjct: 61  LNATLRRPKGFGPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVIPEVVT 120

Query: 121 NRMISRMGFSVGIPLLIGLLFFPFFYYLKVVLKIDVPSWVPVIVSFFFFGSALLGVSYGI 180
           NRM+SRMGF+VGIPL IGLLFFPFFYYLKV LKIDVPSWVPVIVSFFFFGSALLGVSYGI
Sbjct: 121 NRMMSRMGFTVGIPLFIGLLFFPFFYYLKVGLKIDVPSWVPVIVSFFFFGSALLGVSYGI 180

Query: 181 VSSSWDPMREGSLLGWNEAQKNWPVFWQSLWGGSNKK 209
           VSSSWDPMREGSLLGWNEAQKNWPVFWQS+WGGSNKK
Sbjct: 181 VSSSWDPMREGSLLGWNEAQKNWPVFWQSIWGGSNKK 217

[Close]

BLAST of BhiUN403G8 vs. TrEMBL
Match: tr|A0A0A0L507|A0A0A0L507_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G006590 PE=4 SV=1)

HSP 1 Score: 273.1 bits (697), Expect = 5.2e-70
Identity = 174/213 (81.69%), Postives = 187/213 (87.79%), Query Frame = 0


Query: 1   MAAISGSLNLPLAPSNLSSPRIKRNCKISIHLKSYERNCFPKLIPSI--NQRRIHTNQST 60
           MAAI+GSLNLPLAPSNL   RIK+NCK S+H+KS ERNCFP L P+I  NQ + HTN+ T
Sbjct: 1   MAAIAGSLNLPLAPSNLPLLRIKKNCKFSLHIKSNERNCFPNLRPTINQNQNQTHTNRPT 60

Query: 61  TLNATLRRQKGFGPA---PXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVIPEVVTNRMI 120
           +LNATLRR KGFGPA    XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX       NRM+
Sbjct: 61  SLNATLRRPKGFGPASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNRMM 120

Query: 121 SRMGFSVGIPLLIGLLFFPFFYYLKVVLKIDVPSWVPVIVSFFFFGSALLGVSYGIVSSS 180
           SRMGF+VGIPL IGLLFFPFFYYLKV LKIDVPSWVPVIVSFFFFGSALLGVSYGIVSSS
Sbjct: 121 SRMGFTVGIPLFIGLLFFPFFYYLKVGLKIDVPSWVPVIVSFFFFGSALLGVSYGIVSSS 180

Query: 181 WDPMREGSLLGWNEAQKNWPVFWQSLWGGSNKK 209
           WDP+REGSLLGWNEAQKNWPVFW+S+WGGSNKK
Sbjct: 181 WDPLREGSLLGWNEAQKNWPVFWKSIWGGSNKK 213

[Close]

BLAST of BhiUN403G8 vs. TrEMBL
Match: tr|A0A2I4H7Q4|A0A2I4H7Q4_9ROSI (protein PAM68, chloroplastic-like OS=Juglans regia OX=51240 GN=LOC109014250 PE=4 SV=1)

HSP 1 Score: 206.1 bits (523), Expect = 7.8e-50
Identity = 137/171 (80.12%), Postives = 151/171 (88.30%), Query Frame = 0


Query: 41  PKLIPSINQRRIHTNQST-TLNATLRRQKGFGPAP--XXXXXXXXXXXXXXXXXXXXXXX 100
           P  +P ++Q R   ++ T +L ATLR  +GFGP+P  XXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 39  PNFLPKLHQNRAQLSRPTLSLFATLRGPRGFGPSPRXXXXXXXXXXXXXXXXXXXXXXXX 98

Query: 101 XXXXXXXVIPEVVTNRMISRMGFSVGIPLLIGLLFFPFFYYLKVVLKIDVPSWVPVIVSF 160
           XXXXXX VIPEVVTNRM+SRMGFSVGIPL +GLLFFPFFYYLKV LKIDVP+WVP IVSF
Sbjct: 99  XXXXXXGVIPEVVTNRMMSRMGFSVGIPLFMGLLFFPFFYYLKVGLKIDVPTWVPFIVSF 158

Query: 161 FFFGSALLGVSYGIVSSSWDPMREGSLLGWNEAQKNWPVFWQSLWGGSNKK 209
           FFFGSALLGVSYGIVSSSWDPMREGSLLGWNEAQKNWPVFWQS+WG S ++
Sbjct: 159 FFFGSALLGVSYGIVSSSWDPMREGSLLGWNEAQKNWPVFWQSIWGRSGRE 209

[Close]

BLAST of BhiUN403G8 vs. TrEMBL
Match: tr|A0A2G9I4T1|A0A2G9I4T1_9LAMI (Uncharacterized protein OS=Handroanthus impetiginosus OX=429701 GN=CDL12_02504 PE=4 SV=1)

HSP 1 Score: 204.1 bits (518), Expect = 3.0e-49
Identity = 129/172 (75.00%), Postives = 146/172 (84.88%), Query Frame = 0


Query: 37  RNCFPKLIPSINQRRIHTNQSTTLNATLRRQKGFGPAPXXXXXXXXXXXXXXXXXXXXXX 96
           R  FP + P +++ +      + ++ATL   KGFGP P    XXXXXXXXXXXXXXXXXX
Sbjct: 24  RTQFPIVSPMLSKNQFCLIHLSPVSATLNSPKGFGPTP--KKXXXXXXXXXXXXXXXXXX 83

Query: 97  XXXXXXXXVIPEVVTNRMISRMGFSVGIPLLIGLLFFPFFYYLKVVLKIDVPSWVPVIVS 156
           XXXXXXX +IPE+VTNRM++RMGFSVGIPL IGLLFFPFFYYLKV LKIDVP+WVP IVS
Sbjct: 84  XXXXXXXGIIPEIVTNRMMNRMGFSVGIPLFIGLLFFPFFYYLKVGLKIDVPTWVPFIVS 143

Query: 157 FFFFGSALLGVSYGIVSSSWDPMREGSLLGWNEAQKNWPVFWQSLWGGSNKK 209
           FFFFG+ALLGVSYGIVS+SWDP+REGSLLGWNEAQKNWPVFWQS+WGGS KK
Sbjct: 144 FFFFGTALLGVSYGIVSASWDPLREGSLLGWNEAQKNWPVFWQSIWGGSKKK 193

[Close]

BLAST of BhiUN403G8 vs. NCBI nr
Match: XP_008448605.1 (PREDICTED: protein PAM68, chloroplastic isoform X2 [Cucumis melo])

HSP 1 Score: 292.0 bits (746), Expect = 1.6e-75
Identity = 182/216 (84.26%), Postives = 192/216 (88.89%), Query Frame = 0


Query: 1   MAAISGSLNLPLAPSNLSSPRIKRNCKISIHLKSYERNCFPKLIPSINQRRIHTNQSTTL 60
           MAAI+GSLNLPLAPSNL   RIK+NC+ SIH+KSYERNCFP   P+INQ +  TN  T+L
Sbjct: 1   MAAIAGSLNLPLAPSNLPLLRIKKNCEFSIHIKSYERNCFPNFRPTINQNQTRTNHPTSL 60

Query: 61  NATLRRQKGFGPA--------PXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVIPEVVTN 120
           NATLRR KGFGPA         XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVIPEVVTN
Sbjct: 61  NATLRRPKGFGPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVIPEVVTN 120

Query: 121 RMISRMGFSVGIPLLIGLLFFPFFYYLKVVLKIDVPSWVPVIVSFFFFGSALLGVSYGIV 180
           RM+SRMGF+VGIPL IGLLFFPFFYYLKV LKIDVPSWVPVIVSFFFFGSALLGVSYGIV
Sbjct: 121 RMMSRMGFTVGIPLFIGLLFFPFFYYLKVGLKIDVPSWVPVIVSFFFFGSALLGVSYGIV 180

Query: 181 SSSWDPMREGSLLGWNEAQKNWPVFWQSLWGGSNKK 209
           SSSWDPMREGSLLGWNEAQKNWPVFWQS+WGGSNKK
Sbjct: 181 SSSWDPMREGSLLGWNEAQKNWPVFWQSIWGGSNKK 216

[Close]

BLAST of BhiUN403G8 vs. NCBI nr
Match: XP_008448604.1 (PREDICTED: protein PAM68, chloroplastic isoform X1 [Cucumis melo])

HSP 1 Score: 287.3 bits (734), Expect = 4.0e-74
Identity = 182/217 (83.87%), Postives = 192/217 (88.48%), Query Frame = 0


Query: 1   MAAISGSLNLPLAPSNLSSPRIK-RNCKISIHLKSYERNCFPKLIPSINQRRIHTNQSTT 60
           MAAI+GSLNLPLAPSNL   RIK +NC+ SIH+KSYERNCFP   P+INQ +  TN  T+
Sbjct: 1   MAAIAGSLNLPLAPSNLPLLRIKQKNCEFSIHIKSYERNCFPNFRPTINQNQTRTNHPTS 60

Query: 61  LNATLRRQKGFGPA--------PXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVIPEVVT 120
           LNATLRR KGFGPA         XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVIPEVVT
Sbjct: 61  LNATLRRPKGFGPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVIPEVVT 120

Query: 121 NRMISRMGFSVGIPLLIGLLFFPFFYYLKVVLKIDVPSWVPVIVSFFFFGSALLGVSYGI 180
           NRM+SRMGF+VGIPL IGLLFFPFFYYLKV LKIDVPSWVPVIVSFFFFGSALLGVSYGI
Sbjct: 121 NRMMSRMGFTVGIPLFIGLLFFPFFYYLKVGLKIDVPSWVPVIVSFFFFGSALLGVSYGI 180

Query: 181 VSSSWDPMREGSLLGWNEAQKNWPVFWQSLWGGSNKK 209
           VSSSWDPMREGSLLGWNEAQKNWPVFWQS+WGGSNKK
Sbjct: 181 VSSSWDPMREGSLLGWNEAQKNWPVFWQSIWGGSNKK 217

[Close]

BLAST of BhiUN403G8 vs. NCBI nr
Match: XP_004146119.1 (PREDICTED: protein PAM68, chloroplastic isoform X2 [Cucumis sativus] >KGN55697.1 hypothetical protein Csa_3G006590 [Cucumis sativus])

HSP 1 Score: 273.1 bits (697), Expect = 7.9e-70
Identity = 174/213 (81.69%), Postives = 187/213 (87.79%), Query Frame = 0


Query: 1   MAAISGSLNLPLAPSNLSSPRIKRNCKISIHLKSYERNCFPKLIPSI--NQRRIHTNQST 60
           MAAI+GSLNLPLAPSNL   RIK+NCK S+H+KS ERNCFP L P+I  NQ + HTN+ T
Sbjct: 1   MAAIAGSLNLPLAPSNLPLLRIKKNCKFSLHIKSNERNCFPNLRPTINQNQNQTHTNRPT 60

Query: 61  TLNATLRRQKGFGPA---PXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVIPEVVTNRMI 120
           +LNATLRR KGFGPA    XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX       NRM+
Sbjct: 61  SLNATLRRPKGFGPASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNRMM 120

Query: 121 SRMGFSVGIPLLIGLLFFPFFYYLKVVLKIDVPSWVPVIVSFFFFGSALLGVSYGIVSSS 180
           SRMGF+VGIPL IGLLFFPFFYYLKV LKIDVPSWVPVIVSFFFFGSALLGVSYGIVSSS
Sbjct: 121 SRMGFTVGIPLFIGLLFFPFFYYLKVGLKIDVPSWVPVIVSFFFFGSALLGVSYGIVSSS 180

Query: 181 WDPMREGSLLGWNEAQKNWPVFWQSLWGGSNKK 209
           WDP+REGSLLGWNEAQKNWPVFW+S+WGGSNKK
Sbjct: 181 WDPLREGSLLGWNEAQKNWPVFWKSIWGGSNKK 213

[Close]

BLAST of BhiUN403G8 vs. NCBI nr
Match: XP_011650314.1 (PREDICTED: protein PAM68, chloroplastic isoform X1 [Cucumis sativus])

HSP 1 Score: 268.5 bits (685), Expect = 1.9e-68
Identity = 174/214 (81.31%), Postives = 187/214 (87.38%), Query Frame = 0


Query: 1   MAAISGSLNLPLAPSNLSSPRIK-RNCKISIHLKSYERNCFPKLIPSI--NQRRIHTNQS 60
           MAAI+GSLNLPLAPSNL   RIK +NCK S+H+KS ERNCFP L P+I  NQ + HTN+ 
Sbjct: 1   MAAIAGSLNLPLAPSNLPLLRIKQKNCKFSLHIKSNERNCFPNLRPTINQNQNQTHTNRP 60

Query: 61  TTLNATLRRQKGFGPA---PXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVIPEVVTNRM 120
           T+LNATLRR KGFGPA    XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX       NRM
Sbjct: 61  TSLNATLRRPKGFGPASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNRM 120

Query: 121 ISRMGFSVGIPLLIGLLFFPFFYYLKVVLKIDVPSWVPVIVSFFFFGSALLGVSYGIVSS 180
           +SRMGF+VGIPL IGLLFFPFFYYLKV LKIDVPSWVPVIVSFFFFGSALLGVSYGIVSS
Sbjct: 121 MSRMGFTVGIPLFIGLLFFPFFYYLKVGLKIDVPSWVPVIVSFFFFGSALLGVSYGIVSS 180

Query: 181 SWDPMREGSLLGWNEAQKNWPVFWQSLWGGSNKK 209
           SWDP+REGSLLGWNEAQKNWPVFW+S+WGGSNKK
Sbjct: 181 SWDPLREGSLLGWNEAQKNWPVFWKSIWGGSNKK 214

[Close]

BLAST of BhiUN403G8 vs. NCBI nr
Match: XP_023540526.1 (protein PAM68, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 263.5 bits (672), Expect = 6.2e-67
Identity = 174/213 (81.69%), Postives = 183/213 (85.92%), Query Frame = 0


Query: 1   MAAISGSLNLPLAPSNLSSPRIKRNCKISIHLKSYERNCFPKLIPSINQRRIHTNQSTTL 60
           MAAI+GSLNLPLAPS L S  I RN  +SI  KS++RN F  L PS+ Q +  TN +  +
Sbjct: 1   MAAIAGSLNLPLAPSQLPSLHITRNYNLSIQSKSHKRNYFSLLRPSLYQNQTRTNHTLIV 60

Query: 61  NATLRRQKGFGP----APXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVIPEVVTNRMIS 120
           NATLR  KGFGP      XXXXXXXXXXXXXXXXXXXXXXXXXXXXX VIPEVVTNRMIS
Sbjct: 61  NATLRSPKGFGPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGVIPEVVTNRMIS 120

Query: 121 RMGFSVGIPLLIGLLFFPFFYYLKVVLKIDVPSWVPVIVSFFFFGSALLGVSYGIVSSSW 180
           RMGFSVGIPLLIGLLFFPFFYYLKVVLKIDVPSWVPVIVSFFFFGSALLGVSYGIVSSSW
Sbjct: 121 RMGFSVGIPLLIGLLFFPFFYYLKVVLKIDVPSWVPVIVSFFFFGSALLGVSYGIVSSSW 180

Query: 181 DPMREGSLLGWNEAQKNWPVFWQSLW-GGSNKK 209
           DPMREGSLLGWNEAQKNWPVFWQS+W GGSNKK
Sbjct: 181 DPMREGSLLGWNEAQKNWPVFWQSIWSGGSNKK 213

The following BLAST results are available for this feature:

BLAST of BhiUN403G8 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G19100.1	2.1e-48	71.04	Protein of unknown function (DUF3464)	[more]
AT5G52780.1	6.3e-13	40.43	Protein of unknown function (DUF3464)	[more]

BLAST of BhiUN403G8 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|O49668\|PAM68_ARATH	3.7e-47	71.04	Protein PAM68, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PAM68 PE=1 SV=1	[more]
sp\|Q9LTD9\|Y5278_ARATH	1.1e-11	40.43	Uncharacterized protein PAM68-like OS=Arabidopsis thaliana OX=3702 GN=At5g52780 ...	[more]

BLAST of BhiUN403G8 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3BKY8\|A0A1S3BKY8_CUCME	1.1e-75	84.26	protein PAM68, chloroplastic isoform X2 OS=Cucumis melo OX=3656 GN=LOC103490730 ...	[more]
tr\|A0A1S3BKQ0\|A0A1S3BKQ0_CUCME	2.7e-74	83.87	protein PAM68, chloroplastic isoform X1 OS=Cucumis melo OX=3656 GN=LOC103490730 ...	[more]
tr\|A0A0A0L507\|A0A0A0L507_CUCSA	5.2e-70	81.69	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G006590 PE=4 SV=1	[more]
tr\|A0A2I4H7Q4\|A0A2I4H7Q4_9ROSI	7.8e-50	80.12	protein PAM68, chloroplastic-like OS=Juglans regia OX=51240 GN=LOC109014250 PE=4...	[more]
tr\|A0A2G9I4T1\|A0A2G9I4T1_9LAMI	3.0e-49	75.00	Uncharacterized protein OS=Handroanthus impetiginosus OX=429701 GN=CDL12_02504 P...	[more]

BLAST of BhiUN403G8 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008448605.1	1.6e-75	84.26	PREDICTED: protein PAM68, chloroplastic isoform X2 [Cucumis melo]	[more]
XP_008448604.1	4.0e-74	83.87	PREDICTED: protein PAM68, chloroplastic isoform X1 [Cucumis melo]	[more]
XP_004146119.1	7.9e-70	81.69	PREDICTED: protein PAM68, chloroplastic isoform X2 [Cucumis sativus] >KGN55697.1...	[more]
XP_011650314.1	1.9e-68	81.31	PREDICTED: protein PAM68, chloroplastic isoform X1 [Cucumis sativus]	[more]
XP_023540526.1	6.2e-67	81.69	protein PAM68, chloroplastic [Cucurbita pepo subsp. pepo]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR021855	PAM68-like

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0044237	cellular metabolic process
biological_process	GO:0006265	DNA topological change
biological_process	GO:0016556	mRNA modification
biological_process	GO:0010207	photosystem II assembly
biological_process	GO:0008150	biological_process
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003918	DNA topoisomerase type II (ATP-hydrolyzing) activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
BhiUN403M8	BhiUN403M8	mRNA

InterPro

Analysis Name: InterPro Annotations of wax gourd
Date Performed: 2019-11-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR021855	PAM68-like	PFAM	PF11947	DUF3464	coord: 64..200 e-value: 1.3E-50 score: 171.0
IPR021855	PAM68-like	PANTHER	PTHR34575	FAMILY NOT NAMED	coord: 34..208
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 90..104
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 55..104
None	No IPR available	PANTHER	PTHR34575:SF2	PROTEIN PAM68, CHLOROPLASTIC	coord: 34..208

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
BhiUN403G8	Csa3G006590	Cucumber (Chinese Long) v2	cuwgoB338
BhiUN403G8	MELO3C013801	Melon (DHL92) v3.5.1	mewgoB562
BhiUN403G8	ClCG10G001090	Watermelon (Charleston Gray)	wcgwgoB132
BhiUN403G8	CSPI03G01080	Wild cucumber (PI 183967)	cpiwgoB341
BhiUN403G8	Cucsa.322300	Cucumber (Gy14) v1	cgywgoB656
BhiUN403G8	CmaCh06G006070	Cucurbita maxima (Rimu)	cmawgoB1043
BhiUN403G8	MELO3C013801.2	Melon (DHL92) v3.6.1	medwgoB566
BhiUN403G8	Carg16294	Silver-seed gourd	carwgoB0799
BhiUN403G8	CsaV3_3G001110	Cucumber (Chinese Long) v3	cucwgoB344
BhiUN403G8	Cla008859	Watermelon (97103) v1	wgowmB576
BhiUN403G8	Cla97C10G185700	Watermelon (97103) v2	wgowmbB549

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:

None