Cla97C10G185700 (gene) Watermelon (97103) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla97C10G185700
Type	gene
Organism	Citrullus lanatus (Watermelon (97103) v2)
Description	protein PAM68, chloroplastic
Location	Cla97Chr10 : 1040243 .. 1042079 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGGCCATTGCCGGTTCTCTCAACCTTCCTCTTGCGCCTTCAAACCTTCCATCACTCCATGTTAAGGTACTTTTCTCATTACGCCTCCCCATTGCTATTTTTCTTTGAGTTCCGTAAGAACCTTTTCACCTATAACTACTTCGATCATACCTAAACGAAAGGAAGATGGAGGATTCTTTAATCTGAACTGTTCATCAATCGATTTTTCATACGTTTATCCATCAGCAATCGGTTTCTTAAACATTAGGAGTTAGGATTTAGGATTTACTTTACCAGGGATACTTTTAAAACCTAGAACGATCCTTTGATCCATTTCAATGATAACTACTTGAATTATACTGAAATGGAAAGAACACGAAGGATTCTTTAATCTAAACAATCATGAATCGAGTTTCCATTTCGATTGGTTTCTAAACATTAGGAATTAGGATTTGGGATTGATACCTGTAAAATCTAGAGTGATTCATCGATCCAGTTCAATGATAACTATTTGATTGTTGAATTATACGGAAGCTAGAAGAAGATGAAGGATTTTTTTTTTAAAAAAAAGAAAATTTAATCTGAACTATTCATCAACCGATTTTCCATTTAGATTGGTTTCCAAACATACGGGGTTAAAAGAAAAGTTTTGAAAAGTAAGTCCTATAAAGAGAGCCCGTGAATTTGGTTTTAAATTAAGTTGTCCTACCTAGAAATACTTTAAATTTAATTATCGCCTTTCAAGGCAAGGCTCATAAAATCGCCTTTCAAGGCAAAGGCTCATAAAATAAGGCATGCGACTTCGGTAGAGCCCCAAGCCTCAAAGCCATAGAAATTAGGGCAAGGACTTTTTCATTATTTTTAAAAGTAGTAACAATTAAGATTTTTCCTTTTTTATTAATTAAAAAAATCAAATTTATTAAGTCCAAATGCAAAATTTTTTGTGTTTAGGGGTTTTCTTTCATATTTTGGATCTTTTTTGCTTCTTATGCTCGAGCCCCAGGAGAATGTTTGAACTTTAAAAAACCACTAGTTTGAGAGTGAGAAAACCGGTGTGAATATTACATTTTTTCATATAGTAGATTTTTTTATGATGGGTTGTGATTTTTCTTCAGTTTTAGAGTTTTTCACGTAATTTTTTGTGATTCCTAGTTTAGTTTTTTATTTTTATTTTTAATTTTTCAATTCTTTTGCGCTACTAGCAGGAGGTTTTTCCTACCAAGATTGATACTTGTGAAATCTAAAGTGATTCGTTCATCCGATTTCTATCACTAACAAATTTATATGTGTTTTGCAGATAAATTGTAAACTCTCAAACTATTCGAAAAGCTACGAAAGGAGCTGTTTCCCAAATTTGAGACCGAGCATTAATCAAAACCAAACCCGCATGAATCACTCAACGATTTTAAATGCAACATTGAGACGTCCGAAGGGATTCGGACCAGCTCCAAGGAGGAAAAAGACAAAGAAAACAAAAGGAGAAGGAAGCGAGGACGAAGACGAAAACGAAGAAGACGAAGAAGAAGAAGAGGAAGGTGGTGTAATACCAGAAGTAGTGACAAACAGGATGATTAGTAGAATGGGATTTTCAGTGGGGATTCCATTGTTGATAGGGCTTTTGTTCTTCCCATTCTTCTATTACCTCAAAGTTGGGCTGAAGATTGATGTGCCCTCATGGGTGCCAGTTATAGTCTCATTCTTCTTCTTTGGTTCAGCTTTGTTGGGAGTTAGCTATGGGATTGTGTCCTCTAGTTGGGATCCTATGAGGGAAGGCTCTCTGTTGGGTTGGAATGAAGCTCAAAAGAATTGGCCTGTTTTTTGGCAGTCCATTTGGGGTGGATCTAATAAGAAATAG

mRNA sequence

ATGGCGGCCATTGCCGGTTCTCTCAACCTTCCTCTTGCGCCTTCAAACCTTCCATCACTCCATGTTAAGATAAATTGTAAACTCTCAAACTATTCGAAAAGCTACGAAAGGAGCTGTTTCCCAAATTTGAGACCGAGCATTAATCAAAACCAAACCCGCATGAATCACTCAACGATTTTAAATGCAACATTGAGACGTCCGAAGGGATTCGGACCAGCTCCAAGGAGGAAAAAGACAAAGAAAACAAAAGGAGAAGGAAGCGAGGACGAAGACGAAAACGAAGAAGACGAAGAAGAAGAAGAGGAAGGTGGTGTAATACCAGAAGTAGTGACAAACAGGATGATTAGTAGAATGGGATTTTCAGTGGGGATTCCATTGTTGATAGGGCTTTTGTTCTTCCCATTCTTCTATTACCTCAAAGTTGGGCTGAAGATTGATGTGCCCTCATGGGTGCCAGTTATAGTCTCATTCTTCTTCTTTGGTTCAGCTTTGTTGGGAGTTAGCTATGGGATTGTGTCCTCTAGTTGGGATCCTATGAGGGAAGGCTCTCTGTTGGGTTGGAATGAAGCTCAAAAGAATTGGCCTGTTTTTTGGCAGTCCATTTGGGGTGGATCTAATAAGAAATAG

Coding sequence (CDS)

ATGGCGGCCATTGCCGGTTCTCTCAACCTTCCTCTTGCGCCTTCAAACCTTCCATCACTCCATGTTAAGATAAATTGTAAACTCTCAAACTATTCGAAAAGCTACGAAAGGAGCTGTTTCCCAAATTTGAGACCGAGCATTAATCAAAACCAAACCCGCATGAATCACTCAACGATTTTAAATGCAACATTGAGACGTCCGAAGGGATTCGGACCAGCTCCAAGGAGGAAAAAGACAAAGAAAACAAAAGGAGAAGGAAGCGAGGACGAAGACGAAAACGAAGAAGACGAAGAAGAAGAAGAGGAAGGTGGTGTAATACCAGAAGTAGTGACAAACAGGATGATTAGTAGAATGGGATTTTCAGTGGGGATTCCATTGTTGATAGGGCTTTTGTTCTTCCCATTCTTCTATTACCTCAAAGTTGGGCTGAAGATTGATGTGCCCTCATGGGTGCCAGTTATAGTCTCATTCTTCTTCTTTGGTTCAGCTTTGTTGGGAGTTAGCTATGGGATTGTGTCCTCTAGTTGGGATCCTATGAGGGAAGGCTCTCTGTTGGGTTGGAATGAAGCTCAAAAGAATTGGCCTGTTTTTTGGCAGTCCATTTGGGGTGGATCTAATAAGAAATAG

Protein sequence

MAAIAGSLNLPLAPSNLPSLHVKINCKLSNYSKSYERSCFPNLRPSINQNQTRMNHSTILNATLRRPKGFGPAPRRKKTKKTKGEGSEDEDENEEDEEEEEEGGVIPEVVTNRMISRMGFSVGIPLLIGLLFFPFFYYLKVGLKIDVPSWVPVIVSFFFFGSALLGVSYGIVSSSWDPMREGSLLGWNEAQKNWPVFWQSIWGGSNKK

Homology

[Close]

BLAST of Cla97C10G185700 vs. NCBI nr
Match: XP_008448605.1 (PREDICTED: protein PAM68, chloroplastic isoform X2 [Cucumis melo])

HSP 1 Score: 302.4 bits (773), Expect = 1.2e-78
Identity = 188/216 (87.04%), Postives = 195/216 (90.28%), Query Frame = 0


Query: 1   MAAIAGSLNLPLAPSNLPSLHVKINCKLSNYSKSYERSCFPNLRPSINQNQTRMNHSTIL 60
           MAAIAGSLNLPLAPSNLP L +K NC+ S + KSYER+CFPN RP+INQNQTR NH T L
Sbjct: 1   MAAIAGSLNLPLAPSNLPLLRIKKNCEFSIHIKSYERNCFPNFRPTINQNQTRTNHPTSL 60

Query: 61  NATLRRPKGFG--------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGVIPEVVTN 120
           NATLRRPKGFG        XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  VIPEVVTN
Sbjct: 61  NATLRRPKGFGPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVIPEVVTN 120

Query: 121 RMISRMGFSVGIPLLIGLLFFPFFYYLKVGLKIDVPSWVPVIVSFFFFGSALLGVSYGIV 180
           RM+SRMGF+VGIPL IGLLFFPFFYYLKVGLKIDVPSWVPVIVSFFFFGSALLGVSYGIV
Sbjct: 121 RMMSRMGFTVGIPLFIGLLFFPFFYYLKVGLKIDVPSWVPVIVSFFFFGSALLGVSYGIV 180

Query: 181 SSSWDPMREGSLLGWNEAQKNWPVFWQSIWGGSNKK 209
           SSSWDPMREGSLLGWNEAQKNWPVFWQSIWGGSNKK
Sbjct: 181 SSSWDPMREGSLLGWNEAQKNWPVFWQSIWGGSNKK 216

[Close]

BLAST of Cla97C10G185700 vs. NCBI nr
Match: XP_008448604.1 (PREDICTED: protein PAM68, chloroplastic isoform X1 [Cucumis melo])

HSP 1 Score: 297.7 bits (761), Expect = 3.0e-77
Identity = 188/217 (86.64%), Postives = 195/217 (89.86%), Query Frame = 0


Query: 1   MAAIAGSLNLPLAPSNLPSLHVK-INCKLSNYSKSYERSCFPNLRPSINQNQTRMNHSTI 60
           MAAIAGSLNLPLAPSNLP L +K  NC+ S + KSYER+CFPN RP+INQNQTR NH T 
Sbjct: 1   MAAIAGSLNLPLAPSNLPLLRIKQKNCEFSIHIKSYERNCFPNFRPTINQNQTRTNHPTS 60

Query: 61  LNATLRRPKGFG--------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGVIPEVVT 120
           LNATLRRPKGFG        XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  VIPEVVT
Sbjct: 61  LNATLRRPKGFGPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVIPEVVT 120

Query: 121 NRMISRMGFSVGIPLLIGLLFFPFFYYLKVGLKIDVPSWVPVIVSFFFFGSALLGVSYGI 180
           NRM+SRMGF+VGIPL IGLLFFPFFYYLKVGLKIDVPSWVPVIVSFFFFGSALLGVSYGI
Sbjct: 121 NRMMSRMGFTVGIPLFIGLLFFPFFYYLKVGLKIDVPSWVPVIVSFFFFGSALLGVSYGI 180

Query: 181 VSSSWDPMREGSLLGWNEAQKNWPVFWQSIWGGSNKK 209
           VSSSWDPMREGSLLGWNEAQKNWPVFWQSIWGGSNKK
Sbjct: 181 VSSSWDPMREGSLLGWNEAQKNWPVFWQSIWGGSNKK 217

[Close]

BLAST of Cla97C10G185700 vs. NCBI nr
Match: XP_023540526.1 (protein PAM68, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 283.1 bits (723), Expect = 7.6e-73
Identity = 185/213 (86.85%), Postives = 192/213 (90.14%), Query Frame = 0


Query: 1   MAAIAGSLNLPLAPSNLPSLHVKINCKLSNYSKSYERSCFPNLRPSINQNQTRMNHSTIL 60
           MAAIAGSLNLPLAPS LPSLH+  N  LS  SKS++R+ F  LRPS+ QNQTR NH+ I+
Sbjct: 1   MAAIAGSLNLPLAPSQLPSLHITRNYNLSIQSKSHKRNYFSLLRPSLYQNQTRTNHTLIV 60

Query: 61  NATLRRPKGFG----XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGVIPEVVTNRMIS 120
           NATLR PKGFG    XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX GVIPEVVTNRMIS
Sbjct: 61  NATLRSPKGFGPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGVIPEVVTNRMIS 120

Query: 121 RMGFSVGIPLLIGLLFFPFFYYLKVGLKIDVPSWVPVIVSFFFFGSALLGVSYGIVSSSW 180
           RMGFSVGIPLLIGLLFFPFFYYLKV LKIDVPSWVPVIVSFFFFGSALLGVSYGIVSSSW
Sbjct: 121 RMGFSVGIPLLIGLLFFPFFYYLKVVLKIDVPSWVPVIVSFFFFGSALLGVSYGIVSSSW 180

Query: 181 DPMREGSLLGWNEAQKNWPVFWQSIW-GGSNKK 209
           DPMREGSLLGWNEAQKNWPVFWQSIW GGSNKK
Sbjct: 181 DPMREGSLLGWNEAQKNWPVFWQSIWSGGSNKK 213

[Close]

BLAST of Cla97C10G185700 vs. NCBI nr
Match: XP_023005760.1 (protein PAM68, chloroplastic [Cucurbita maxima])

HSP 1 Score: 281.2 bits (718), Expect = 2.9e-72
Identity = 184/213 (86.38%), Postives = 191/213 (89.67%), Query Frame = 0


Query: 1   MAAIAGSLNLPLAPSNLPSLHVKINCKLSNYSKSYERSCFPNLRPSINQNQTRMNHSTIL 60
           MAAI GSLNLPLAPS LPSLH+    KLS  SKS++R+ F  LRPS+ QNQTR NH+ I+
Sbjct: 1   MAAITGSLNLPLAPSKLPSLHITRKYKLSIQSKSHKRNYFSLLRPSLYQNQTRTNHTLIV 60

Query: 61  NATLRRPKGFG----XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGVIPEVVTNRMIS 120
           NATLR PKGFG    XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX GVIPEVVTNRMIS
Sbjct: 61  NATLRSPKGFGPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGVIPEVVTNRMIS 120

Query: 121 RMGFSVGIPLLIGLLFFPFFYYLKVGLKIDVPSWVPVIVSFFFFGSALLGVSYGIVSSSW 180
           RMGFSVGIPLLIGLLFFPFFYYLKV LKIDVPSWVPVIVSFFFFGSALLGVSYGIVSSSW
Sbjct: 121 RMGFSVGIPLLIGLLFFPFFYYLKVVLKIDVPSWVPVIVSFFFFGSALLGVSYGIVSSSW 180

Query: 181 DPMREGSLLGWNEAQKNWPVFWQSIW-GGSNKK 209
           DPMREGSLLGWNEAQKNWPVFWQSIW GGSNKK
Sbjct: 181 DPMREGSLLGWNEAQKNWPVFWQSIWSGGSNKK 213

[Close]

BLAST of Cla97C10G185700 vs. NCBI nr
Match: XP_022949106.1 (protein PAM68, chloroplastic [Cucurbita moschata])

HSP 1 Score: 280.8 bits (717), Expect = 3.8e-72
Identity = 184/212 (86.79%), Postives = 190/212 (89.62%), Query Frame = 0


Query: 1   MAAIAGSLNLPLAPSNLPSLHVKINCKLSNYSKSYERSCFPNLRPSINQNQTRMNHSTIL 60
           MAAI GSLNLPLAPS LPSLH+  N  LS  SKS +R+ F  LRPS+ QNQTR NH+ I+
Sbjct: 1   MAAITGSLNLPLAPSKLPSLHITRNYNLSIQSKSQKRNYFSLLRPSLYQNQTRTNHTLIV 60

Query: 61  NATLRRPKGFG---XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGVIPEVVTNRMISR 120
           NATLR PKGFG   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX GVIPEVVTNRMISR
Sbjct: 61  NATLRSPKGFGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGVIPEVVTNRMISR 120

Query: 121 MGFSVGIPLLIGLLFFPFFYYLKVGLKIDVPSWVPVIVSFFFFGSALLGVSYGIVSSSWD 180
           MGFSVGIPLLIGLLFFPFFYYLKV LKIDVPSWVPVIVSFFFFGSALLGVSYGIVSSSWD
Sbjct: 121 MGFSVGIPLLIGLLFFPFFYYLKVVLKIDVPSWVPVIVSFFFFGSALLGVSYGIVSSSWD 180

Query: 181 PMREGSLLGWNEAQKNWPVFWQSIW-GGSNKK 209
           PMREGSLLGWNEAQKNWPVFWQSIW GGSNKK
Sbjct: 181 PMREGSLLGWNEAQKNWPVFWQSIWSGGSNKK 212

[Close]

BLAST of Cla97C10G185700 vs. TrEMBL
Match: tr|A0A1S3BKY8|A0A1S3BKY8_CUCME (protein PAM68, chloroplastic isoform X2 OS=Cucumis melo OX=3656 GN=LOC103490730 PE=4 SV=1)

HSP 1 Score: 302.4 bits (773), Expect = 8.0e-79
Identity = 188/216 (87.04%), Postives = 195/216 (90.28%), Query Frame = 0


Query: 1   MAAIAGSLNLPLAPSNLPSLHVKINCKLSNYSKSYERSCFPNLRPSINQNQTRMNHSTIL 60
           MAAIAGSLNLPLAPSNLP L +K NC+ S + KSYER+CFPN RP+INQNQTR NH T L
Sbjct: 1   MAAIAGSLNLPLAPSNLPLLRIKKNCEFSIHIKSYERNCFPNFRPTINQNQTRTNHPTSL 60

Query: 61  NATLRRPKGFG--------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGVIPEVVTN 120
           NATLRRPKGFG        XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  VIPEVVTN
Sbjct: 61  NATLRRPKGFGPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVIPEVVTN 120

Query: 121 RMISRMGFSVGIPLLIGLLFFPFFYYLKVGLKIDVPSWVPVIVSFFFFGSALLGVSYGIV 180
           RM+SRMGF+VGIPL IGLLFFPFFYYLKVGLKIDVPSWVPVIVSFFFFGSALLGVSYGIV
Sbjct: 121 RMMSRMGFTVGIPLFIGLLFFPFFYYLKVGLKIDVPSWVPVIVSFFFFGSALLGVSYGIV 180

Query: 181 SSSWDPMREGSLLGWNEAQKNWPVFWQSIWGGSNKK 209
           SSSWDPMREGSLLGWNEAQKNWPVFWQSIWGGSNKK
Sbjct: 181 SSSWDPMREGSLLGWNEAQKNWPVFWQSIWGGSNKK 216

[Close]

BLAST of Cla97C10G185700 vs. TrEMBL
Match: tr|A0A1S3BKQ0|A0A1S3BKQ0_CUCME (protein PAM68, chloroplastic isoform X1 OS=Cucumis melo OX=3656 GN=LOC103490730 PE=4 SV=1)

HSP 1 Score: 297.7 bits (761), Expect = 2.0e-77
Identity = 188/217 (86.64%), Postives = 195/217 (89.86%), Query Frame = 0


Query: 1   MAAIAGSLNLPLAPSNLPSLHVK-INCKLSNYSKSYERSCFPNLRPSINQNQTRMNHSTI 60
           MAAIAGSLNLPLAPSNLP L +K  NC+ S + KSYER+CFPN RP+INQNQTR NH T 
Sbjct: 1   MAAIAGSLNLPLAPSNLPLLRIKQKNCEFSIHIKSYERNCFPNFRPTINQNQTRTNHPTS 60

Query: 61  LNATLRRPKGFG--------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGVIPEVVT 120
           LNATLRRPKGFG        XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  VIPEVVT
Sbjct: 61  LNATLRRPKGFGPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVIPEVVT 120

Query: 121 NRMISRMGFSVGIPLLIGLLFFPFFYYLKVGLKIDVPSWVPVIVSFFFFGSALLGVSYGI 180
           NRM+SRMGF+VGIPL IGLLFFPFFYYLKVGLKIDVPSWVPVIVSFFFFGSALLGVSYGI
Sbjct: 121 NRMMSRMGFTVGIPLFIGLLFFPFFYYLKVGLKIDVPSWVPVIVSFFFFGSALLGVSYGI 180

Query: 181 VSSSWDPMREGSLLGWNEAQKNWPVFWQSIWGGSNKK 209
           VSSSWDPMREGSLLGWNEAQKNWPVFWQSIWGGSNKK
Sbjct: 181 VSSSWDPMREGSLLGWNEAQKNWPVFWQSIWGGSNKK 217

[Close]

BLAST of Cla97C10G185700 vs. TrEMBL
Match: tr|A0A0A0L507|A0A0A0L507_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G006590 PE=4 SV=1)

HSP 1 Score: 275.8 bits (704), Expect = 8.0e-71
Identity = 178/213 (83.57%), Postives = 186/213 (87.32%), Query Frame = 0


Query: 1   MAAIAGSLNLPLAPSNLPSLHVKINCKLSNYSKSYERSCFPNLRPSI--NQNQTRMNHST 60
           MAAIAGSLNLPLAPSNLP L +K NCK S + KS ER+CFPNLRP+I  NQNQT  N  T
Sbjct: 1   MAAIAGSLNLPLAPSNLPLLRIKKNCKFSLHIKSNERNCFPNLRPTINQNQNQTHTNRPT 60

Query: 61  ILNATLRRPKGFG---XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGVIPEVVTNRMI 120
            LNATLRRPKGFG   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX         NRM+
Sbjct: 61  SLNATLRRPKGFGPASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNRMM 120

Query: 121 SRMGFSVGIPLLIGLLFFPFFYYLKVGLKIDVPSWVPVIVSFFFFGSALLGVSYGIVSSS 180
           SRMGF+VGIPL IGLLFFPFFYYLKVGLKIDVPSWVPVIVSFFFFGSALLGVSYGIVSSS
Sbjct: 121 SRMGFTVGIPLFIGLLFFPFFYYLKVGLKIDVPSWVPVIVSFFFFGSALLGVSYGIVSSS 180

Query: 181 WDPMREGSLLGWNEAQKNWPVFWQSIWGGSNKK 209
           WDP+REGSLLGWNEAQKNWPVFW+SIWGGSNKK
Sbjct: 181 WDPLREGSLLGWNEAQKNWPVFWKSIWGGSNKK 213

[Close]

BLAST of Cla97C10G185700 vs. TrEMBL
Match: tr|A0A2G9I4T1|A0A2G9I4T1_9LAMI (Uncharacterized protein OS=Handroanthus impetiginosus OX=429701 GN=CDL12_02504 PE=4 SV=1)

HSP 1 Score: 216.1 bits (549), Expect = 7.6e-53
Identity = 133/172 (77.33%), Postives = 150/172 (87.21%), Query Frame = 0


Query: 37  RSCFPNLRPSINQNQTRMNHSTILNATLRRPKGFGXXXXXXXXXXXXXXXXXXXXXXXXX 96
           R+ FP + P +++NQ  + H + ++ATL  PKGFG       XXXXXXXXXXXXXXXXXX
Sbjct: 24  RTQFPIVSPMLSKNQFCLIHLSPVSATLNSPKGFG--PTPKKXXXXXXXXXXXXXXXXXX 83

Query: 97  XXXXXXGGVIPEVVTNRMISRMGFSVGIPLLIGLLFFPFFYYLKVGLKIDVPSWVPVIVS 156
           XXXXXX G+IPE+VTNRM++RMGFSVGIPL IGLLFFPFFYYLKVGLKIDVP+WVP IVS
Sbjct: 84  XXXXXXXGIIPEIVTNRMMNRMGFSVGIPLFIGLLFFPFFYYLKVGLKIDVPTWVPFIVS 143

Query: 157 FFFFGSALLGVSYGIVSSSWDPMREGSLLGWNEAQKNWPVFWQSIWGGSNKK 209
           FFFFG+ALLGVSYGIVS+SWDP+REGSLLGWNEAQKNWPVFWQSIWGGS KK
Sbjct: 144 FFFFGTALLGVSYGIVSASWDPLREGSLLGWNEAQKNWPVFWQSIWGGSKKK 193

[Close]

BLAST of Cla97C10G185700 vs. TrEMBL
Match: tr|A0A067KK85|A0A067KK85_JATCU (Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_10801 PE=4 SV=1)

HSP 1 Score: 214.9 bits (546), Expect = 1.7e-52
Identity = 148/214 (69.16%), Postives = 167/214 (78.04%), Query Frame = 0


Query: 1   MAAIAGSLNLP-----LAPSNLPSLHVKINCKLSNYSKSYERSCFPNLRPSINQNQTRMN 60
           MA++ G+L  P       PS + S+  + +   S+     + S FP  + +  QNQ   +
Sbjct: 1   MASMEGALIRPSFSTLSLPSKIDSVFEQASTFTSSLIPVKQTSHFPVSKQNFYQNQYYFS 60

Query: 61  HSTILNATLRRPKGFG-XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGVIPEVVTNRM 120
           +S  + ATL  P+GFG    XXXXXXXXXXXXXXXXXXXXXXXXXXXX G+IPEVVTNRM
Sbjct: 61  YSRPVYATLNSPRGFGPPPKXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGIIPEVVTNRM 120

Query: 121 ISRMGFSVGIPLLIGLLFFPFFYYLKVGLKIDVPSWVPVIVSFFFFGSALLGVSYGIVSS 180
           ISRMGFSVGIPL IGLLFFPFFYYLKVGLKIDVP+WVP IVSFFFFGSALLGVSYGIVSS
Sbjct: 121 ISRMGFSVGIPLFIGLLFFPFFYYLKVGLKIDVPTWVPFIVSFFFFGSALLGVSYGIVSS 180

Query: 181 SWDPMREGSLLGWNEAQKNWPVFWQSIWGGSNKK 209
           SWDP+REGSLLGWNEAQKNWPVFWQS+WG S KK
Sbjct: 181 SWDPLREGSLLGWNEAQKNWPVFWQSLWGRSGKK 214

[Close]

BLAST of Cla97C10G185700 vs. Swiss-Prot
Match: sp|O49668|PAM68_ARATH (Protein PAM68, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PAM68 PE=1 SV=1)

HSP 1 Score: 193.4 bits (490), Expect = 2.6e-48
Identity = 88/105 (83.81%), Postives = 98/105 (93.33%), Query Frame = 0


Query: 104 GVIPEVVTNRMISRMGFSVGIPLLIGLLFFPFFYYLKVGLKIDVPSWVPVIVSFFFFGSA 163
           GVIPE+VTNRMISRMGF+VG+PL IGLLFFPFFYYLKVGLK+DVP+WVP IVSF FFG+A
Sbjct: 110 GVIPEIVTNRMISRMGFTVGLPLFIGLLFFPFFYYLKVGLKVDVPTWVPFIVSFVFFGTA 169

Query: 164 LLGVSYGIVSSSWDPMREGSLLGWNEAQKNWPVFWQSIWGGSNKK 209
           L GVSYGIVSSSWDP+REGSLLGWNEA+KNWPVFWQS W  S+K+
Sbjct: 170 LAGVSYGIVSSSWDPLREGSLLGWNEAKKNWPVFWQSFWNSSDKR 214

[Close]

BLAST of Cla97C10G185700 vs. Swiss-Prot
Match: sp|Q9LTD9|Y5278_ARATH (Uncharacterized protein PAM68-like OS=Arabidopsis thaliana OX=3702 GN=At5g52780 PE=2 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 3.0e-12
Identity = 38/94 (40.43%), Postives = 55/94 (58.51%), Query Frame = 0


Query: 106 IPEVVTNRMISRMGFSVGIPLLIGLLFFPFFYYLKVGLKIDVPSWVPVIVSFFFFGSALL 165
           IP+ V  RM+ R+  SVG PL +G+        LK     DVP WVP + +   FGS+ L
Sbjct: 72  IPQEVFERMMGRIVVSVGTPLGLGVAILKVLEVLKDRNVWDVPLWVPYLTTLVTFGSSAL 131

Query: 166 GVSYGIVSSSWDPMREGSLLGWNEAQKNWPVFWQ 200
           G++YG +S++ DP +  SL G  EA++NW   W+
Sbjct: 132 GIAYGSLSTNLDPAKTNSLFGLKEAKENWVEMWK 165

[Close]

BLAST of Cla97C10G185700 vs. TAIR10
Match: AT4G19100.1 (Protein of unknown function (DUF3464))

HSP 1 Score: 193.4 bits (490), Expect = 1.4e-49
Identity = 88/105 (83.81%), Postives = 98/105 (93.33%), Query Frame = 0


Query: 104 GVIPEVVTNRMISRMGFSVGIPLLIGLLFFPFFYYLKVGLKIDVPSWVPVIVSFFFFGSA 163
           GVIPE+VTNRMISRMGF+VG+PL IGLLFFPFFYYLKVGLK+DVP+WVP IVSF FFG+A
Sbjct: 110 GVIPEIVTNRMISRMGFTVGLPLFIGLLFFPFFYYLKVGLKVDVPTWVPFIVSFVFFGTA 169

Query: 164 LLGVSYGIVSSSWDPMREGSLLGWNEAQKNWPVFWQSIWGGSNKK 209
           L GVSYGIVSSSWDP+REGSLLGWNEA+KNWPVFWQS W  S+K+
Sbjct: 170 LAGVSYGIVSSSWDPLREGSLLGWNEAKKNWPVFWQSFWNSSDKR 214

[Close]

BLAST of Cla97C10G185700 vs. TAIR10
Match: AT5G52780.1 (Protein of unknown function (DUF3464))

HSP 1 Score: 73.6 bits (179), Expect = 1.7e-13
Identity = 38/94 (40.43%), Postives = 55/94 (58.51%), Query Frame = 0


Query: 106 IPEVVTNRMISRMGFSVGIPLLIGLLFFPFFYYLKVGLKIDVPSWVPVIVSFFFFGSALL 165
           IP+ V  RM+ R+  SVG PL +G+        LK     DVP WVP + +   FGS+ L
Sbjct: 72  IPQEVFERMMGRIVVSVGTPLGLGVAILKVLEVLKDRNVWDVPLWVPYLTTLVTFGSSAL 131

Query: 166 GVSYGIVSSSWDPMREGSLLGWNEAQKNWPVFWQ 200
           G++YG +S++ DP +  SL G  EA++NW   W+
Sbjct: 132 GIAYGSLSTNLDPAKTNSLFGLKEAKENWVEMWK 165

The following BLAST results are available for this feature:

BLAST of Cla97C10G185700 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008448605.1	1.2e-78	87.04	PREDICTED: protein PAM68, chloroplastic isoform X2 [Cucumis melo]	[more]
XP_008448604.1	3.0e-77	86.64	PREDICTED: protein PAM68, chloroplastic isoform X1 [Cucumis melo]	[more]
XP_023540526.1	7.6e-73	86.85	protein PAM68, chloroplastic [Cucurbita pepo subsp. pepo]	[more]
XP_023005760.1	2.9e-72	86.38	protein PAM68, chloroplastic [Cucurbita maxima]	[more]
XP_022949106.1	3.8e-72	86.79	protein PAM68, chloroplastic [Cucurbita moschata]	[more]

BLAST of Cla97C10G185700 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3BKY8\|A0A1S3BKY8_CUCME	8.0e-79	87.04	protein PAM68, chloroplastic isoform X2 OS=Cucumis melo OX=3656 GN=LOC103490730 ...	[more]
tr\|A0A1S3BKQ0\|A0A1S3BKQ0_CUCME	2.0e-77	86.64	protein PAM68, chloroplastic isoform X1 OS=Cucumis melo OX=3656 GN=LOC103490730 ...	[more]
tr\|A0A0A0L507\|A0A0A0L507_CUCSA	8.0e-71	83.57	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G006590 PE=4 SV=1	[more]
tr\|A0A2G9I4T1\|A0A2G9I4T1_9LAMI	7.6e-53	77.33	Uncharacterized protein OS=Handroanthus impetiginosus OX=429701 GN=CDL12_02504 P...	[more]
tr\|A0A067KK85\|A0A067KK85_JATCU	1.7e-52	69.16	Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_10801 PE=4 SV=1	[more]

BLAST of Cla97C10G185700 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|O49668\|PAM68_ARATH	2.6e-48	83.81	Protein PAM68, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PAM68 PE=1 SV=1	[more]
sp\|Q9LTD9\|Y5278_ARATH	3.0e-12	40.43	Uncharacterized protein PAM68-like OS=Arabidopsis thaliana OX=3702 GN=At5g52780 ...	[more]

BLAST of Cla97C10G185700 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G19100.1	1.4e-49	83.81	Protein of unknown function (DUF3464)	[more]
AT5G52780.1	1.7e-13	40.43	Protein of unknown function (DUF3464)	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR021855	PAM68-like

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016556	mRNA modification
biological_process	GO:0010207	photosystem II assembly
biological_process	GO:0044237	cellular metabolic process
biological_process	GO:0006265	DNA topological change
biological_process	GO:0008150	biological_process
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0016020	membrane
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003918	DNA topoisomerase type II (ATP-hydrolyzing) activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla97C10G185700.1	Cla97C10G185700.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon 97103 v2
Date Performed: 2019-05-12


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR021855	PAM68-like	PFAM	PF11947	DUF3464	coord: 75..200 e-value: 6.7E-51 score: 171.9
IPR021855	PAM68-like	PANTHER	PTHR34575	FAMILY NOT NAMED	coord: 28..208
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 65..104
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 88..104
None	No IPR available	PANTHER	PTHR34575:SF2	PROTEIN PAM68, CHLOROPLASTIC	coord: 28..208

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla97C10G185700	Cla008859	Watermelon (97103) v1	wmwmbB056
Cla97C10G185700	Csa3G006590	Cucumber (Chinese Long) v2	cuwmbB181
Cla97C10G185700	MELO3C013801	Melon (DHL92) v3.5.1	mewmbB430
Cla97C10G185700	ClCG10G001090	Watermelon (Charleston Gray)	wcgwmbB038
Cla97C10G185700	CSPI03G01080	Wild cucumber (PI 183967)	cpiwmbB184
Cla97C10G185700	Cucsa.322300	Cucumber (Gy14) v1	cgywmbB562
Cla97C10G185700	CmaCh06G006070	Cucurbita maxima (Rimu)	cmawmbB839
Cla97C10G185700	CmoCh06G006130	Cucurbita moschata (Rifu)	cmowmbB813
Cla97C10G185700	Lsi07G011410	Bottle gourd (USVL1VR-Ls)	lsiwmbB395
Cla97C10G185700	CsGy3G001020	Cucumber (Gy14) v2	cgybwmbB174
Cla97C10G185700	MELO3C013801.2	Melon (DHL92) v3.6.1	medwmbB415
Cla97C10G185700	Carg16294	Silver-seed gourd	carwmbB0705
Cla97C10G185700	CsaV3_3G001110	Cucumber (Chinese Long) v3	cucwmbB182
Cla97C10G185700	BhiUN403G8	Wax gourd	wgowmbB549

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla97C10G185700	Silver-seed gourd	carwmbB1107
Cla97C10G185700	Cucurbita maxima (Rimu)	cmawmbB337
Cla97C10G185700	Cucurbita moschata (Rifu)	cmowmbB320