MELO3C013801 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C013801
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Protein PAM68, chloroplastic-like protein
Location	chr6 : 35093153 .. 35094945 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AAGCGAAATTTTGATGAAAACCTTATCCTCTTTCACTGCTCTCATCCATGGCGTCCGTCCCTGCTTCGCATAGTGAATACAAAATGTAAGAGACGAGTCGACTGTATTTCAGTTTCATAGACAAACCTTCATGGCCGCCATTGCCGGATCTCTCAACCTTCCTCTTGCGCCTTCAAACCTTCCATTACTCCGCATTAAGGTACTCTTCTCATTTCGCCTCCCGATTGCAACATTTCTTTTAGTTCTATAACAACCTTTTCTACTATAACTACTTCAAATTATACCTAAACGATGAAGGATTCTTTAATCCGAACTGTTTGTCAATGGATTTTCCATAAGTTCATCAATCAACAATCGGTTTCTTAAAGATTAGGAGTTAGGATTTAGGATTTACTTTATCAGGGATACTTGTGAAACCTAGAACGATTCATTGATCCATTTCAATGACTACTGCTTGAATTATAATGAAACGGAAGAAGACGAAGGATTCTTTAATCTGAACTATTCATCAATCGAATCTCAGTTTTGATTAGTAGTTAGGATTTAGGCTTGGTATCAGTAAAACCTAGCGTGATTCATCGATTCAGTTCGATGATAACTACTTGAATGTTGAATTATACTGAAATGGAAGGATGACGAAGGTACTTTTTTTTTTAAATATCAGAACTATTGATTTTCCATTTCGATTGATTTACGAACATAGGAATTAGGATAGTTTTGAAGAACAATTGATTGTAAGAAGAAAACAGGAGTTGGGATAGTTGTTCGAGAATTATGAGGGTGGGCAAAGGAAACAAGTGTGGTTTGTTTGAATATGTTGTTAAGAAGTTATATATAAAAAGGAGTCTATGAATGTGGTGAGATTTTTTACTGAGCATGATTGATATTTGTTAAACTCGGAATGATTCGATGATTCACGTTGTTTACTAGACAAATTTATATTTTCTCAGCAGAAAAATTGTGAATTCTCAATCCATATAAAAAGCTACGAAAGAAATTGTTTTCCAAATTTTAGACCAACCATTAACCAAAACCAAACTCGCACGAACCATCCCACGAGTTTAAATGCAACATTGAGGCGTCCGAAGGGATTCGGACCAGCTCCAAGGAAGAAGAAGATGAAGAAAACAAAAGGAGAAGGAAGGGAGGATGATGACAATGACGAAGATGAAGAGGAAGACAACGAGGAAGAGGAAGACAACGAGGAAGAGGAAGGTGGTGTAATACCAGAAGTAGTGACAAATAGGATGATGAGTAGAATGGGATTTACGGTGGGGATTCCATTGTTTATAGGGCTATTGTTCTTCCCATTCTTCTATTACCTCAAAGTTGGGCTGAAGATTGATGTGCCCTCATGGGTGCCAGTCATAGTCTCATTCTTCTTCTTTGGCTCAGCTCTTTTGGGAGTTAGCTATGGGATTGTGTCCTCTAGTTGGGATCCTATGAGGGAAGGCTCTTTATTGGGTTGGAATGAAGCTCAGAAAAATTGGCCTGTTTTTTGGCAGTCCATTTGGGGTGGATCTAATAAGAAATAGATGAATTGGCTTTTATCTTCTTTCTTTCTCTTTCTTTCTCTGGTTCTTTTCGTATAAATATTATGGTCTTTTCTATAAGTGATATGAGAAGCTAAAACGAGGATAGTTTGTAGTCCATCTAGTTGAACTTAACTCAATGGTAGTCAGCAATAATCTTCTATTCAAATTTTCATCCCATATAATTGTCATAAGTTTGTAGTTCGAACCTTTCTCATTTCGTTTTACTAAAACGAAGTTATACGACAAATAATGTTGCTT

mRNA sequence

AAGCGAAATTTTGATGAAAACCTTATCCTCTTTCACTGCTCTCATCCATGGCGTCCGTCCCTGCTTCGCATAGTGAATACAAAATGTAAGAGACGAGTCGACTGTATTTCAGTTTCATAGACAAACCTTCATGGCCGCCATTGCCGGATCTCTCAACCTTCCTCTTGCGCCTTCAAACCTTCCATTACTCCGCATTAAGAAAAATTGTGAATTCTCAATCCATATAAAAAGCTACGAAAGAAATTGTTTTCCAAATTTTAGACCAACCATTAACCAAAACCAAACTCGCACGAACCATCCCACGAGTTTAAATGCAACATTGAGGCGTCCGAAGGGATTCGGACCAGCTCCAAGGAAGAAGAAGATGAAGAAAACAAAAGGAGAAGGAAGGGAGGATGATGACAATGACGAAGATGAAGAGGAAGACAACGAGGAAGAGGAAGACAACGAGGAAGAGGAAGGTGGTGTAATACCAGAAGTAGTGACAAATAGGATGATGAGTAGAATGGGATTTACGGTGGGGATTCCATTGTTTATAGGGCTATTGTTCTTCCCATTCTTCTATTACCTCAAAGTTGGGCTGAAGATTGATGTGCCCTCATGGGTGCCAGTCATAGTCTCATTCTTCTTCTTTGGCTCAGCTCTTTTGGGAGTTAGCTATGGGATTGTGTCCTCTAGTTGGGATCCTATGAGGGAAGGCTCTTTATTGGGTTGGAATGAAGCTCAGAAAAATTGGCCTGTTTTTTGGCAGTCCATTTGGGGTGGATCTAATAAGAAATAGATGAATTGGCTTTTATCTTCTTTCTTTCTCTTTCTTTCTCTGGTTCTTTTCGTATAAATATTATGGTCTTTTCTATAAGTGATATGAGAAGCTAAAACGAGGATAGTTTGTAGTCCATCTAGTTGAACTTAACTCAATGGTAGTCAGCAATAATCTTCTATTCAAATTTTCATCCCATATAATTGTCATAAGTTTGTAGTTCGAACCTTTCTCATTTCGTTTTACTAAAACGAAGTTATACGACAAATAATGTTGCTT

Coding sequence (CDS)

ATGGCCGCCATTGCCGGATCTCTCAACCTTCCTCTTGCGCCTTCAAACCTTCCATTACTCCGCATTAAGAAAAATTGTGAATTCTCAATCCATATAAAAAGCTACGAAAGAAATTGTTTTCCAAATTTTAGACCAACCATTAACCAAAACCAAACTCGCACGAACCATCCCACGAGTTTAAATGCAACATTGAGGCGTCCGAAGGGATTCGGACCAGCTCCAAGGAAGAAGAAGATGAAGAAAACAAAAGGAGAAGGAAGGGAGGATGATGACAATGACGAAGATGAAGAGGAAGACAACGAGGAAGAGGAAGACAACGAGGAAGAGGAAGGTGGTGTAATACCAGAAGTAGTGACAAATAGGATGATGAGTAGAATGGGATTTACGGTGGGGATTCCATTGTTTATAGGGCTATTGTTCTTCCCATTCTTCTATTACCTCAAAGTTGGGCTGAAGATTGATGTGCCCTCATGGGTGCCAGTCATAGTCTCATTCTTCTTCTTTGGCTCAGCTCTTTTGGGAGTTAGCTATGGGATTGTGTCCTCTAGTTGGGATCCTATGAGGGAAGGCTCTTTATTGGGTTGGAATGAAGCTCAGAAAAATTGGCCTGTTTTTTGGCAGTCCATTTGGGGTGGATCTAATAAGAAATAG

Protein sequence

MAAIAGSLNLPLAPSNLPLLRIKKNCEFSIHIKSYERNCFPNFRPTINQNQTRTNHPTSLNATLRRPKGFGPAPRKKKMKKTKGEGREDDDNDEDEEEDNEEEEDNEEEEGGVIPEVVTNRMMSRMGFTVGIPLFIGLLFFPFFYYLKVGLKIDVPSWVPVIVSFFFFGSALLGVSYGIVSSSWDPMREGSLLGWNEAQKNWPVFWQSIWGGSNKK*

Homology

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BLAST of MELO3C013801 vs. Swiss-Prot
Match: PAM68_ARATH (Protein PAM68, chloroplastic OS=Arabidopsis thaliana GN=PAM68 PE=1 SV=1)

HSP 1 Score: 251.9 bits (642), Expect = 6.3e-66
Identity = 115/167 (68.86%), Postives = 136/167 (81.44%), Query Frame = 1


Query: 50  NQTRTNHPTSLNATLRRPKGFGPAPRKKKMKKTKGEGREDDDNDEDEEEDNEEEEDNEEE 109
           N+   +    L+AT+  PKGFGP P+K K  K    G + D++D+DE+ED+++EED  E 
Sbjct: 50  NRLEISRIAPLHATMNSPKGFGPPPKKTKKSKKPKPGNQSDEDDDDEDEDDDDEED--ER 109

Query: 110 EGGVIPEVVTNRMMSRMGFTVGIPLFIGLLFFPFFYYLKVGLKIDVPSWVPVIVSFFFFG 169
           E GVIPE+VTNRM+SRMGFTVG+PLFIGLLFFPFFYYLKVGLK+DVP+WVP IVSF FFG
Sbjct: 110 ERGVIPEIVTNRMISRMGFTVGLPLFIGLLFFPFFYYLKVGLKVDVPTWVPFIVSFVFFG 169

Query: 170 SALLGVSYGIVSSSWDPMREGSLLGWNEAQKNWPVFWQSIWGGSNKK 217
           +AL GVSYGIVSSSWDP+REGSLLGWNEA+KNWPVFWQS W  S+K+
Sbjct: 170 TALAGVSYGIVSSSWDPLREGSLLGWNEAKKNWPVFWQSFWNSSDKR 214

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BLAST of MELO3C013801 vs. TrEMBL
Match: A0A0A0L507_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G006590 PE=4 SV=1)

HSP 1 Score: 397.9 bits (1021), Expect = 7.9e-108
Identity = 195/218 (89.45%), Postives = 202/218 (92.66%), Query Frame = 1


Query: 1   MAAIAGSLNLPLAPSNLPLLRIKKNCEFSIHIKSYERNCFPNFRPTI--NQNQTRTNHPT 60
           MAAIAGSLNLPLAPSNLPLLRIKKNC+FS+HIKS ERNCFPN RPTI  NQNQT TN PT
Sbjct: 1   MAAIAGSLNLPLAPSNLPLLRIKKNCKFSLHIKSNERNCFPNLRPTINQNQNQTHTNRPT 60

Query: 61  SLNATLRRPKGFGPAPRKKKMKKTKGEGREDDDNDEDEEEDNEEEEDNEEEEGGVIPEVV 120
           SLNATLRRPKGFGPA RKKK KKT+ EG EDDDN+E+EEED E     EEEEGGVIPEVV
Sbjct: 61  SLNATLRRPKGFGPASRKKKTKKTRREGSEDDDNEEEEEEDEE-----EEEEGGVIPEVV 120

Query: 121 TNRMMSRMGFTVGIPLFIGLLFFPFFYYLKVGLKIDVPSWVPVIVSFFFFGSALLGVSYG 180
           TNRMMSRMGFTVGIPLFIGLLFFPFFYYLKVGLKIDVPSWVPVIVSFFFFGSALLGVSYG
Sbjct: 121 TNRMMSRMGFTVGIPLFIGLLFFPFFYYLKVGLKIDVPSWVPVIVSFFFFGSALLGVSYG 180

Query: 181 IVSSSWDPMREGSLLGWNEAQKNWPVFWQSIWGGSNKK 217
           IVSSSWDP+REGSLLGWNEAQKNWPVFW+SIWGGSNKK
Sbjct: 181 IVSSSWDPLREGSLLGWNEAQKNWPVFWKSIWGGSNKK 213

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BLAST of MELO3C013801 vs. TrEMBL
Match: A0A022RB86_ERYGU (Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a014159mg PE=4 SV=1)

HSP 1 Score: 265.0 bits (676), Expect = 8.0e-68
Identity = 129/207 (62.32%), Postives = 157/207 (75.85%), Query Frame = 1


Query: 10  LPLAPSNLPLLRIKKNCEFSIHIKSYERNCFPNFRPTINQNQTRTNHPTSLNATLRRPKG 69
           LPL P   P L + KN           R  FP  +PT+++NQ ++ H   ++ATL  PKG
Sbjct: 12  LPLLP---PSLTLTKN-----------RTQFPILKPTLSKNQIKSTHFNLVSATLNSPKG 71

Query: 70  FGPAPRKKKMKKTKGEGREDDDNDEDEEEDNEEEEDNEEEEGGVIPEVVTNRMMSRMGFT 129
           FGP P+K ++ K      +   N E E+E+ EEEED+++ E  VIPE+VTNRMMSR+G +
Sbjct: 72  FGPTPKKVRISK------KSKKNYESEDEEEEEEEDDDDREEDVIPEIVTNRMMSRIGLS 131

Query: 130 VGIPLFIGLLFFPFFYYLKVGLKIDVPSWVPVIVSFFFFGSALLGVSYGIVSSSWDPMRE 189
           VGIPLF+GLLFFPFFYYLKVGLKID+P+WVP IVSF FFG+ALLGVSYGIVS+SWDP+RE
Sbjct: 132 VGIPLFVGLLFFPFFYYLKVGLKIDIPTWVPFIVSFVFFGTALLGVSYGIVSASWDPLRE 191

Query: 190 GSLLGWNEAQKNWPVFWQSIWGGSNKK 217
           GSLLGWNEA+KNWPVFWQSIWGGSNKK
Sbjct: 192 GSLLGWNEAKKNWPVFWQSIWGGSNKK 198

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BLAST of MELO3C013801 vs. TrEMBL
Match: A0A068V2P5_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00042427001 PE=4 SV=1)

HSP 1 Score: 259.2 bits (661), Expect = 4.4e-66
Identity = 122/176 (69.32%), Postives = 145/176 (82.39%), Query Frame = 1


Query: 41  PNFRPTINQNQTRTNHPTSLNATLRRPKGFGPAPRKKKMKKTKGEGREDDDNDEDEEEDN 100
           P   PT  +NQ+R    TS++ATL  P+GFGP+P+K K  KT  +       D DEEED+
Sbjct: 30  PILTPTY-RNQSRQPQFTSISATLNTPRGFGPSPKKAKKTKTPKK-------DYDEEEDD 89

Query: 101 EEEEDNEEEEGGVIPEVVTNRMMSRMGFTVGIPLFIGLLFFPFFYYLKVGLKIDVPSWVP 160
           +++E+ E+ E G+IPE+VTNRMMSRMGF+VG+PLFIGLLFFPFFYYLKVGLKIDVP+W+P
Sbjct: 90  DDDEEEEDREEGIIPEIVTNRMMSRMGFSVGVPLFIGLLFFPFFYYLKVGLKIDVPTWIP 149

Query: 161 VIVSFFFFGSALLGVSYGIVSSSWDPMREGSLLGWNEAQKNWPVFWQSIWGGSNKK 217
            IVSF FFG+ALLGVSYGIVSSSWDP+REGS LGWNEAQKNWPVFWQSIWGG +KK
Sbjct: 150 FIVSFIFFGTALLGVSYGIVSSSWDPLREGSFLGWNEAQKNWPVFWQSIWGGGSKK 197

[Close]

BLAST of MELO3C013801 vs. TrEMBL
Match: A0A0D2MZZ6_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_004G178900 PE=4 SV=1)

HSP 1 Score: 255.4 bits (651), Expect = 6.4e-65
Identity = 126/173 (72.83%), Postives = 143/173 (82.66%), Query Frame = 1


Query: 45  PTINQNQTRTNHPTSLNATLRRPKGFGPAPRK-KKMKKTKGEGREDDDNDEDEEEDNEEE 104
           P   QNQ R  +   ++ATL  PKGFG  P+K KK KK+K  G   DDN+E+EEE+ EEE
Sbjct: 19  PVNPQNQIRPLYLLPIHATLNSPKGFGSPPKKNKKTKKSKSGG---DDNEEEEEEEEEEE 78

Query: 105 EDNEEEEGGVIPEVVTNRMMSRMGFTVGIPLFIGLLFFPFFYYLKVGLKIDVPSWVPVIV 164
           E+  E E GVIPEVVTNRM+SRMGFTVGIPL +GLLFFPFFYYLKV LKIDVP+WVP IV
Sbjct: 79  EN--EAEAGVIPEVVTNRMISRMGFTVGIPLLVGLLFFPFFYYLKVELKIDVPTWVPFIV 138

Query: 165 SFFFFGSALLGVSYGIVSSSWDPMREGSLLGWNEAQKNWPVFWQSIWGGSNKK 217
           SF FFG+ALLGVSYGIVSSSWDP+REGS+LGWNEAQKNWPVFWQSIWGG ++K
Sbjct: 139 SFIFFGTALLGVSYGIVSSSWDPLREGSVLGWNEAQKNWPVFWQSIWGGGSRK 186

[Close]

BLAST of MELO3C013801 vs. TrEMBL
Match: A0A0D2R6P9_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_004G178900 PE=4 SV=1)

HSP 1 Score: 255.4 bits (651), Expect = 6.4e-65
Identity = 126/173 (72.83%), Postives = 143/173 (82.66%), Query Frame = 1


Query: 45  PTINQNQTRTNHPTSLNATLRRPKGFGPAPRK-KKMKKTKGEGREDDDNDEDEEEDNEEE 104
           P   QNQ R  +   ++ATL  PKGFG  P+K KK KK+K  G   DDN+E+EEE+ EEE
Sbjct: 40  PVNPQNQIRPLYLLPIHATLNSPKGFGSPPKKNKKTKKSKSGG---DDNEEEEEEEEEEE 99

Query: 105 EDNEEEEGGVIPEVVTNRMMSRMGFTVGIPLFIGLLFFPFFYYLKVGLKIDVPSWVPVIV 164
           E+  E E GVIPEVVTNRM+SRMGFTVGIPL +GLLFFPFFYYLKV LKIDVP+WVP IV
Sbjct: 100 EN--EAEAGVIPEVVTNRMISRMGFTVGIPLLVGLLFFPFFYYLKVELKIDVPTWVPFIV 159

Query: 165 SFFFFGSALLGVSYGIVSSSWDPMREGSLLGWNEAQKNWPVFWQSIWGGSNKK 217
           SF FFG+ALLGVSYGIVSSSWDP+REGS+LGWNEAQKNWPVFWQSIWGG ++K
Sbjct: 160 SFIFFGTALLGVSYGIVSSSWDPLREGSVLGWNEAQKNWPVFWQSIWGGGSRK 207

[Close]

BLAST of MELO3C013801 vs. TAIR10
Match: AT4G19100.1 (AT4G19100.1 Protein of unknown function (DUF3464))

HSP 1 Score: 251.9 bits (642), Expect = 3.6e-67
Identity = 115/167 (68.86%), Postives = 136/167 (81.44%), Query Frame = 1


Query: 50  NQTRTNHPTSLNATLRRPKGFGPAPRKKKMKKTKGEGREDDDNDEDEEEDNEEEEDNEEE 109
           N+   +    L+AT+  PKGFGP P+K K  K    G + D++D+DE+ED+++EED  E 
Sbjct: 50  NRLEISRIAPLHATMNSPKGFGPPPKKTKKSKKPKPGNQSDEDDDDEDEDDDDEED--ER 109

Query: 110 EGGVIPEVVTNRMMSRMGFTVGIPLFIGLLFFPFFYYLKVGLKIDVPSWVPVIVSFFFFG 169
           E GVIPE+VTNRM+SRMGFTVG+PLFIGLLFFPFFYYLKVGLK+DVP+WVP IVSF FFG
Sbjct: 110 ERGVIPEIVTNRMISRMGFTVGLPLFIGLLFFPFFYYLKVGLKVDVPTWVPFIVSFVFFG 169

Query: 170 SALLGVSYGIVSSSWDPMREGSLLGWNEAQKNWPVFWQSIWGGSNKK 217
           +AL GVSYGIVSSSWDP+REGSLLGWNEA+KNWPVFWQS W  S+K+
Sbjct: 170 TALAGVSYGIVSSSWDPLREGSLLGWNEAKKNWPVFWQSFWNSSDKR 214

[Close]

BLAST of MELO3C013801 vs. TAIR10
Match: AT5G52780.1 (AT5G52780.1 Protein of unknown function (DUF3464))

HSP 1 Score: 80.5 bits (197), Expect = 1.4e-15
Identity = 40/103 (38.83%), Postives = 57/103 (55.34%), Query Frame = 1


Query: 105 DNEEEEGGVIPEVVTNRMMSRMGFTVGIPLFIGLLFFPFFYYLKVGLKIDVPSWVPVIVS 164
           D + E+   IP+ V  RMM R+  +VG PL +G+        LK     DVP WVP + +
Sbjct: 63  DPDPEDDPPIPQEVFERMMGRIVVSVGTPLGLGVAILKVLEVLKDRNVWDVPLWVPYLTT 122

Query: 165 FFFFGSALLGVSYGIVSSSWDPMREGSLLGWNEAQKNWPVFWQ 208
              FGS+ LG++YG +S++ DP +  SL G  EA++NW   W+
Sbjct: 123 LVTFGSSALGIAYGSLSTNLDPAKTNSLFGLKEAKENWVEMWK 165

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BLAST of MELO3C013801 vs. NCBI nr
Match: gi|659095484|ref|XP_008448605.1| (PREDICTED: protein PAM68, chloroplastic isoform X2 [Cucumis melo])

HSP 1 Score: 452.6 bits (1163), Expect = 3.9e-124
Identity = 216/216 (100.00%), Postives = 216/216 (100.00%), Query Frame = 1


Query: 1   MAAIAGSLNLPLAPSNLPLLRIKKNCEFSIHIKSYERNCFPNFRPTINQNQTRTNHPTSL 60
           MAAIAGSLNLPLAPSNLPLLRIKKNCEFSIHIKSYERNCFPNFRPTINQNQTRTNHPTSL
Sbjct: 1   MAAIAGSLNLPLAPSNLPLLRIKKNCEFSIHIKSYERNCFPNFRPTINQNQTRTNHPTSL 60

Query: 61  NATLRRPKGFGPAPRKKKMKKTKGEGREDDDNDEDEEEDNEEEEDNEEEEGGVIPEVVTN 120
           NATLRRPKGFGPAPRKKKMKKTKGEGREDDDNDEDEEEDNEEEEDNEEEEGGVIPEVVTN
Sbjct: 61  NATLRRPKGFGPAPRKKKMKKTKGEGREDDDNDEDEEEDNEEEEDNEEEEGGVIPEVVTN 120

Query: 121 RMMSRMGFTVGIPLFIGLLFFPFFYYLKVGLKIDVPSWVPVIVSFFFFGSALLGVSYGIV 180
           RMMSRMGFTVGIPLFIGLLFFPFFYYLKVGLKIDVPSWVPVIVSFFFFGSALLGVSYGIV
Sbjct: 121 RMMSRMGFTVGIPLFIGLLFFPFFYYLKVGLKIDVPSWVPVIVSFFFFGSALLGVSYGIV 180

Query: 181 SSSWDPMREGSLLGWNEAQKNWPVFWQSIWGGSNKK 217
           SSSWDPMREGSLLGWNEAQKNWPVFWQSIWGGSNKK
Sbjct: 181 SSSWDPMREGSLLGWNEAQKNWPVFWQSIWGGSNKK 216

[Close]

BLAST of MELO3C013801 vs. NCBI nr
Match: gi|659095482|ref|XP_008448604.1| (PREDICTED: protein PAM68, chloroplastic isoform X1 [Cucumis melo])

HSP 1 Score: 448.0 bits (1151), Expect = 9.6e-123
Identity = 216/217 (99.54%), Postives = 216/217 (99.54%), Query Frame = 1


Query: 1   MAAIAGSLNLPLAPSNLPLLRIK-KNCEFSIHIKSYERNCFPNFRPTINQNQTRTNHPTS 60
           MAAIAGSLNLPLAPSNLPLLRIK KNCEFSIHIKSYERNCFPNFRPTINQNQTRTNHPTS
Sbjct: 1   MAAIAGSLNLPLAPSNLPLLRIKQKNCEFSIHIKSYERNCFPNFRPTINQNQTRTNHPTS 60

Query: 61  LNATLRRPKGFGPAPRKKKMKKTKGEGREDDDNDEDEEEDNEEEEDNEEEEGGVIPEVVT 120
           LNATLRRPKGFGPAPRKKKMKKTKGEGREDDDNDEDEEEDNEEEEDNEEEEGGVIPEVVT
Sbjct: 61  LNATLRRPKGFGPAPRKKKMKKTKGEGREDDDNDEDEEEDNEEEEDNEEEEGGVIPEVVT 120

Query: 121 NRMMSRMGFTVGIPLFIGLLFFPFFYYLKVGLKIDVPSWVPVIVSFFFFGSALLGVSYGI 180
           NRMMSRMGFTVGIPLFIGLLFFPFFYYLKVGLKIDVPSWVPVIVSFFFFGSALLGVSYGI
Sbjct: 121 NRMMSRMGFTVGIPLFIGLLFFPFFYYLKVGLKIDVPSWVPVIVSFFFFGSALLGVSYGI 180

Query: 181 VSSSWDPMREGSLLGWNEAQKNWPVFWQSIWGGSNKK 217
           VSSSWDPMREGSLLGWNEAQKNWPVFWQSIWGGSNKK
Sbjct: 181 VSSSWDPMREGSLLGWNEAQKNWPVFWQSIWGGSNKK 217

[Close]

BLAST of MELO3C013801 vs. NCBI nr
Match: gi|449456765|ref|XP_004146119.1| (PREDICTED: protein PAM68, chloroplastic isoform X2 [Cucumis sativus])

HSP 1 Score: 397.9 bits (1021), Expect = 1.1e-107
Identity = 195/218 (89.45%), Postives = 202/218 (92.66%), Query Frame = 1


Query: 1   MAAIAGSLNLPLAPSNLPLLRIKKNCEFSIHIKSYERNCFPNFRPTI--NQNQTRTNHPT 60
           MAAIAGSLNLPLAPSNLPLLRIKKNC+FS+HIKS ERNCFPN RPTI  NQNQT TN PT
Sbjct: 1   MAAIAGSLNLPLAPSNLPLLRIKKNCKFSLHIKSNERNCFPNLRPTINQNQNQTHTNRPT 60

Query: 61  SLNATLRRPKGFGPAPRKKKMKKTKGEGREDDDNDEDEEEDNEEEEDNEEEEGGVIPEVV 120
           SLNATLRRPKGFGPA RKKK KKT+ EG EDDDN+E+EEED E     EEEEGGVIPEVV
Sbjct: 61  SLNATLRRPKGFGPASRKKKTKKTRREGSEDDDNEEEEEEDEE-----EEEEGGVIPEVV 120

Query: 121 TNRMMSRMGFTVGIPLFIGLLFFPFFYYLKVGLKIDVPSWVPVIVSFFFFGSALLGVSYG 180
           TNRMMSRMGFTVGIPLFIGLLFFPFFYYLKVGLKIDVPSWVPVIVSFFFFGSALLGVSYG
Sbjct: 121 TNRMMSRMGFTVGIPLFIGLLFFPFFYYLKVGLKIDVPSWVPVIVSFFFFGSALLGVSYG 180

Query: 181 IVSSSWDPMREGSLLGWNEAQKNWPVFWQSIWGGSNKK 217
           IVSSSWDP+REGSLLGWNEAQKNWPVFW+SIWGGSNKK
Sbjct: 181 IVSSSWDPLREGSLLGWNEAQKNWPVFWKSIWGGSNKK 213

[Close]

BLAST of MELO3C013801 vs. NCBI nr
Match: gi|778674883|ref|XP_011650314.1| (PREDICTED: protein PAM68, chloroplastic isoform X1 [Cucumis sativus])

HSP 1 Score: 393.3 bits (1009), Expect = 2.8e-106
Identity = 195/219 (89.04%), Postives = 202/219 (92.24%), Query Frame = 1


Query: 1   MAAIAGSLNLPLAPSNLPLLRIK-KNCEFSIHIKSYERNCFPNFRPTINQNQ--TRTNHP 60
           MAAIAGSLNLPLAPSNLPLLRIK KNC+FS+HIKS ERNCFPN RPTINQNQ  T TN P
Sbjct: 1   MAAIAGSLNLPLAPSNLPLLRIKQKNCKFSLHIKSNERNCFPNLRPTINQNQNQTHTNRP 60

Query: 61  TSLNATLRRPKGFGPAPRKKKMKKTKGEGREDDDNDEDEEEDNEEEEDNEEEEGGVIPEV 120
           TSLNATLRRPKGFGPA RKKK KKT+ EG EDDDN+E+EEED E     EEEEGGVIPEV
Sbjct: 61  TSLNATLRRPKGFGPASRKKKTKKTRREGSEDDDNEEEEEEDEE-----EEEEGGVIPEV 120

Query: 121 VTNRMMSRMGFTVGIPLFIGLLFFPFFYYLKVGLKIDVPSWVPVIVSFFFFGSALLGVSY 180
           VTNRMMSRMGFTVGIPLFIGLLFFPFFYYLKVGLKIDVPSWVPVIVSFFFFGSALLGVSY
Sbjct: 121 VTNRMMSRMGFTVGIPLFIGLLFFPFFYYLKVGLKIDVPSWVPVIVSFFFFGSALLGVSY 180

Query: 181 GIVSSSWDPMREGSLLGWNEAQKNWPVFWQSIWGGSNKK 217
           GIVSSSWDP+REGSLLGWNEAQKNWPVFW+SIWGGSNKK
Sbjct: 181 GIVSSSWDPLREGSLLGWNEAQKNWPVFWKSIWGGSNKK 214

[Close]

BLAST of MELO3C013801 vs. NCBI nr
Match: gi|747089912|ref|XP_011092614.1| (PREDICTED: protein PAM68, chloroplastic [Sesamum indicum])

HSP 1 Score: 271.9 bits (694), Expect = 9.4e-70
Identity = 129/176 (73.30%), Postives = 145/176 (82.39%), Query Frame = 1


Query: 41  PNFRPTINQNQTRTNHPTSLNATLRRPKGFGPAPRKKKMKKTKGEGREDDDNDEDEEEDN 100
           P+  P ++ NQ    H T L+ATL  PKGFGP P+K K  K   +  E D+ +E+EEE+ 
Sbjct: 28  PSLSPILSNNQFHLIHITPLSATLNSPKGFGPTPKKVKKSKKSKKNYESDEEEEEEEEEE 87

Query: 101 EEEEDNEEEEGGVIPEVVTNRMMSRMGFTVGIPLFIGLLFFPFFYYLKVGLKIDVPSWVP 160
           EEE+D EE   GVIPEVVTNRM+SRMGF+VGIPLFIGLLFFPFFYYLKVGLKIDVP+WVP
Sbjct: 88  EEEDDREE---GVIPEVVTNRMISRMGFSVGIPLFIGLLFFPFFYYLKVGLKIDVPTWVP 147

Query: 161 VIVSFFFFGSALLGVSYGIVSSSWDPMREGSLLGWNEAQKNWPVFWQSIWGGSNKK 217
            IVSF FFG+ALLGVSYGIVS+SWDPMREGSLLGWNEAQKNWPVFWQSIWGGS KK
Sbjct: 148 FIVSFIFFGTALLGVSYGIVSASWDPMREGSLLGWNEAQKNWPVFWQSIWGGSKKK 200

The following BLAST results are available for this feature:

BLAST of MELO3C013801 vs. Swiss-Prot


Match Name	E-value	Identity	Description
PAM68_ARATH	6.3e-66	68.86	Protein PAM68, chloroplastic OS=Arabidopsis thaliana GN=PAM68 PE=1 SV=1	[more]

BLAST of MELO3C013801 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L507_CUCSA	7.9e-108	89.45	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G006590 PE=4 SV=1	[more]
A0A022RB86_ERYGU	8.0e-68	62.32	Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a014159mg PE=4 SV=1	[more]
A0A068V2P5_COFCA	4.4e-66	69.32	Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00042427001 PE=4 SV=1	[more]
A0A0D2MZZ6_GOSRA	6.4e-65	72.83	Uncharacterized protein OS=Gossypium raimondii GN=B456_004G178900 PE=4 SV=1	[more]
A0A0D2R6P9_GOSRA	6.4e-65	72.83	Uncharacterized protein OS=Gossypium raimondii GN=B456_004G178900 PE=4 SV=1	[more]

BLAST of MELO3C013801 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G19100.1	3.6e-67	68.86	Protein of unknown function (DUF3464)	[more]
AT5G52780.1	1.4e-15	38.83	Protein of unknown function (DUF3464)	[more]

BLAST of MELO3C013801 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659095484\|ref\|XP_008448605.1\|	3.9e-124	100.00	PREDICTED: protein PAM68, chloroplastic isoform X2 [Cucumis melo]	[more]
gi\|659095482\|ref\|XP_008448604.1\|	9.6e-123	99.54	PREDICTED: protein PAM68, chloroplastic isoform X1 [Cucumis melo]	[more]
gi\|449456765\|ref\|XP_004146119.1\|	1.1e-107	89.45	PREDICTED: protein PAM68, chloroplastic isoform X2 [Cucumis sativus]	[more]
gi\|778674883\|ref\|XP_011650314.1\|	2.8e-106	89.04	PREDICTED: protein PAM68, chloroplastic isoform X1 [Cucumis sativus]	[more]
gi\|747089912\|ref\|XP_011092614.1\|	9.4e-70	73.30	PREDICTED: protein PAM68, chloroplastic [Sesamum indicum]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR013757	Topo_IIA_A_a_sf
IPR021855	PAM68-like
IPR013757	Topo_IIA_A_a_sf
IPR021855	PAM68-like

Vocabulary: **Molecular Function**
Term	Definition
GO:0003677	DNA binding
GO:0003918	DNA topoisomerase type II (ATP-hydrolyzing) activity
GO:0005524	ATP binding
GO:0003677	DNA binding
GO:0003918	DNA topoisomerase type II (ATP-hydrolyzing) activity
GO:0005524	ATP binding

Vocabulary: **Biological Process**
Term	Definition
GO:0006265	DNA topological change
GO:0006265	DNA topological change

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006265	DNA topological change
biological_process	GO:0044237	cellular metabolic process
biological_process	GO:0008150	biological_process
biological_process	GO:0016556	mRNA modification
biological_process	GO:0010207	photosystem II assembly
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003918	DNA topoisomerase type II (ATP-hydrolyzing) activity
molecular_function	GO:0003674	molecular_function

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
MU47372	melon EST collection version 4.0	transcribed_cluster
MU59211	melon EST collection version 4.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C013801T1	MELO3C013801T1	mRNA
MELO3C013801T2	MELO3C013801T2	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
MU47372	MU47372	transcribed_cluster
MU59211	MU59211	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013757	Type IIA DNA topoisomerase subunit A, alpha-helical domain	GENE3D	G3DSA:1.10.268.10		coord: 68..110 score: 8.
IPR021855	Protein of unknown function DUF3464	PFAM	PF11947	DUF3464	coord: 71..209 score: 4.6
None	No IPR available	PANTHER	PTHR34575	FAMILY NOT NAMED	coord: 41..217 score: 4.1
None	No IPR available	PANTHER	PTHR34575:SF2	SUBFAMILY NOT NAMED	coord: 41..217 score: 4.1

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
MELO3C013801	Csa3G006590	Cucumber (Chinese Long) v2	cumeB243
MELO3C013801	Cla008859	Watermelon (97103) v1	mewmB446
MELO3C013801	ClCG10G001090	Watermelon (Charleston Gray)	mewcgB415
MELO3C013801	Cla97C10G185700	Watermelon (97103) v2	mewmbB430
MELO3C013801	BhiUN403G8	Wax gourd	mewgoB562
MELO3C013801	CSPI03G01080	Wild cucumber (PI 183967)	cpimeB240
MELO3C013801	Cucsa.322300	Cucumber (Gy14) v1	cgymeB532
MELO3C013801	CmaCh06G006070	Cucurbita maxima (Rimu)	cmameB768
MELO3C013801	CmoCh06G006130	Cucurbita moschata (Rifu)	cmomeB758
MELO3C013801	Lsi07G011410	Bottle gourd (USVL1VR-Ls)	lsimeB446
MELO3C013801	Cp4.1LG08g08940	Cucurbita pepo (Zucchini)	cpemeB808
MELO3C013801	CsGy3G001020	Cucumber (Gy14) v2	cgybmeB209
MELO3C013801	Carg16294	Silver-seed gourd	carmeB0681
MELO3C013801	CsaV3_3G001110	Cucumber (Chinese Long) v3	cucmeB246

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C013801	Cucurbita maxima (Rimu)	cmameB291
MELO3C013801	Cucurbita moschata (Rifu)	cmomeB284
MELO3C013801	Cucurbita pepo (Zucchini)	cpemeB184
MELO3C013801	Silver-seed gourd	carmeB1017