Cp4.1LG08g08940 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG08g08940
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	ABC-type Co2+ transport system, permease component
Location	Cp4.1LG08 : 7070371 .. 7071713 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGTCCGTCTCTGCTTCACGCAGTGAAGACGAAATGTAAGAGCCGAGCCGACTGTGTTTCAATTTCAGAGAAAAATCCTAATGGCCGCCATTGCCGGATCGCTCAACCTTCCTCTTGCGCCTTCACAGCTTCCATCACTTCACATTACGGTACTCTTCTCACTTCTCCTCGCGATTGCGATTTTCTTCTCGCTACTTCTGAGTTCTGTAGAAAACTTTCCAGCTATAACTATGAATTTTACTGAAACGGACGTAAGATGATGGATTCTTCAATCTGAACTGTTCATCAATCGATTTTTCCTAAGTTTGTTAATCGTCAATAGGTTTCGCTAATATTAGGAGTTTTAGGATTGATACTTGAAAAAACCTAGAAATCTATTTTGAAACGGAAGGAAAGTGAAGGATTCTTTAATCTGAACTATTCATCACTCGATTTTCCATAAGTTCATAAATCCACAGCCAGTTTCGTAACATTAGGAGTCAGGATTTAAGTTGATACTTGTAAAACCTAGAGCGAATTCATCGATCCATTTCGATTTCAGTTAAGACGAGTGGAGTGATTCAATTACCGATTACGAGACGAATTTCTGTTTGTTCTGCAGAGGAATTATAACTTATCGATCCAATCAAAAAGCCACAAAAGGAACTATTTCTCACTTTTGAGACCAAGCCTTTACCAAAACCAAACTCGCACGAACCACACCTTGATTGTAAACGCGACATTGAGAAGTCCAAAAGGATTCGGACCAACTCCAAGGAAGAAGAAGAAGAAGAAGAAAACAAAAGGAGGAGGAGATGGAGAAGAAGAAAGTGAGGATGAGGAAGATGAGGAAGAAGAGGAGGAGGAAGATCGTGGTGTGATACCAGAAGTAGTGACGAACAGGATGATCAGTAGGATGGGATTTTCAGTGGGGATTCCATTGTTGATAGGACTTTTGTTCTTCCCATTCTTCTATTACCTGAAAGTTGTGCTGAAAATCGATGTGCCCTCATGGGTGCCAGTCATAGTATCCTTCTTCTTCTTTGGTTCTGCTCTCTTGGGAGTGAGCTATGGCATTGTGTCCTCTAGTTGGGATCCCATGAGGGAAGGGTCTCTTTTGGGTTGGAATGAAGCTCAGAAGAATTGGCCTGTTTTTTGGCAGTCCATTTGGAGTGGTGGATCTAATAAGAAATAGATGATTTCTCTTTTTAATCAGAAATATTATATTTTTTCTTCCTATAAATGTTATTTGAGAAGGAAACTTATTACAGTAGTTGAATTAGTTTTTTGCTTTGTTCATTGTTTTAGATTACAAGTTTGGTTCTTCGACTTTTAAGGTTGTATCTCGAAAACGGCCGATA

mRNA sequence

ATGGCACGAAATGTAAGAGCCGAGCCGACTGTGTTTCAATTTCAGAGAAAAATCCTAATGGCCGCCATTGCCGGATCGCTCAACCTTCCTCTTGCGCCTTCACAGCTTCCATCACTTCACATTACGAGGAATTATAACTTATCGATCCAATCAAAAAGCCACAAAAGGAACTATTTCTCACTTTTGAGACCAAGCCTTTACCAAAACCAAACTCGCACGAACCACACCTTGATTGTAAACGCGACATTGAGAAGTCCAAAAGGATTCGGACCAACTCCAAGGAAGAAGAAGAAGAAGAAGAAAACAAAAGGAGGAGGAGATGGAGAAGAAGAAAGTGAGGATGAGGAAGATGAGGAAGAAGAGGAGGAGGAAGATCGTGGTGTGATACCAGAAGTAGTGACGAACAGGATGATCAGTAGGATGGGATTTTCAGTGGGGATTCCATTGTTGATAGGACTTTTGTTCTTCCCATTCTTCTATTACCTGAAAGTTGTGCTGAAAATCGATGTGCCCTCATGGGTGCCAGTCATAGTATCCTTCTTCTTCTTTGGTTCTGCTCTCTTGGGAGTGAGCTATGGCATTGTGTCCTCTAGTTGGGATCCCATGAGGGAAGGGTCTCTTTTGGGTTGGAATGAAGCTCAGAAGAATTGGCCTGTTTTTTGGCAGTCCATTTGGAGTGATTACAAGTTTGGTTCTTCGACTTTTAAGGTTGTATCTCGAAAACGGCCGATA

Coding sequence (CDS)

ATGGCACGAAATGTAAGAGCCGAGCCGACTGTGTTTCAATTTCAGAGAAAAATCCTAATGGCCGCCATTGCCGGATCGCTCAACCTTCCTCTTGCGCCTTCACAGCTTCCATCACTTCACATTACGAGGAATTATAACTTATCGATCCAATCAAAAAGCCACAAAAGGAACTATTTCTCACTTTTGAGACCAAGCCTTTACCAAAACCAAACTCGCACGAACCACACCTTGATTGTAAACGCGACATTGAGAAGTCCAAAAGGATTCGGACCAACTCCAAGGAAGAAGAAGAAGAAGAAGAAAACAAAAGGAGGAGGAGATGGAGAAGAAGAAAGTGAGGATGAGGAAGATGAGGAAGAAGAGGAGGAGGAAGATCGTGGTGTGATACCAGAAGTAGTGACGAACAGGATGATCAGTAGGATGGGATTTTCAGTGGGGATTCCATTGTTGATAGGACTTTTGTTCTTCCCATTCTTCTATTACCTGAAAGTTGTGCTGAAAATCGATGTGCCCTCATGGGTGCCAGTCATAGTATCCTTCTTCTTCTTTGGTTCTGCTCTCTTGGGAGTGAGCTATGGCATTGTGTCCTCTAGTTGGGATCCCATGAGGGAAGGGTCTCTTTTGGGTTGGAATGAAGCTCAGAAGAATTGGCCTGTTTTTTGGCAGTCCATTTGGAGTGATTACAAGTTTGGTTCTTCGACTTTTAAGGTTGTATCTCGAAAACGGCCGATA

Protein sequence

MARNVRAEPTVFQFQRKILMAAIAGSLNLPLAPSQLPSLHITRNYNLSIQSKSHKRNYFSLLRPSLYQNQTRTNHTLIVNATLRSPKGFGPTPRKKKKKKKTKGGGDGEEESEDEEDEEEEEEEDRGVIPEVVTNRMISRMGFSVGIPLLIGLLFFPFFYYLKVVLKIDVPSWVPVIVSFFFFGSALLGVSYGIVSSSWDPMREGSLLGWNEAQKNWPVFWQSIWSDYKFGSSTFKVVSRKRPI

Homology

[Close]

BLAST of Cp4.1LG08g08940 vs. Swiss-Prot
Match: PAM68_ARATH (Protein PAM68, chloroplastic OS=Arabidopsis thaliana GN=PAM68 PE=1 SV=1)

HSP 1 Score: 221.9 bits (564), Expect = 7.9e-57
Identity = 112/160 (70.00%), Postives = 135/160 (84.38%), Query Frame = 1


Query: 69  NQTRTNHTLIVNATLRSPKGFGPTPRKKKKKKKTKGGG--DGEEESEDEEDEEEEEEEDR 128
           N+   +    ++AT+ SPKGFGP P+K KK KK K G   D +++ EDE+D++EE+E +R
Sbjct: 50  NRLEISRIAPLHATMNSPKGFGPPPKKTKKSKKPKPGNQSDEDDDDEDEDDDDEEDERER 109

Query: 129 GVIPEVVTNRMISRMGFSVGIPLLIGLLFFPFFYYLKVVLKIDVPSWVPVIVSFFFFGSA 188
           GVIPE+VTNRMISRMGF+VG+PL IGLLFFPFFYYLKV LK+DVP+WVP IVSF FFG+A
Sbjct: 110 GVIPEIVTNRMISRMGFTVGLPLFIGLLFFPFFYYLKVGLKVDVPTWVPFIVSFVFFGTA 169

Query: 189 LLGVSYGIVSSSWDPMREGSLLGWNEAQKNWPVFWQSIWS 227
           L GVSYGIVSSSWDP+REGSLLGWNEA+KNWPVFWQS W+
Sbjct: 170 LAGVSYGIVSSSWDPLREGSLLGWNEAKKNWPVFWQSFWN 209

[Close]

BLAST of Cp4.1LG08g08940 vs. Swiss-Prot
Match: Y5278_ARATH (Uncharacterized protein PAM68-like OS=Arabidopsis thaliana GN=At5g52780 PE=2 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 1.4e-08
Identity = 50/146 (34.25%), Postives = 73/146 (50.00%), Query Frame = 1


Query: 79  VNATLRSPKGFGPTPRKKKKKKKTKGGGDGEEESEDEED--EEEEEEEDRGVIPEVVTNR 138
           V     +PK   P   K + + K   G  G + S   E     + + ED   IP+ V  R
Sbjct: 21  VKTKSHNPKTLYPN-NKPRWESKLHAGPKGFQSSRTSEKPGRPDPDPEDDPPIPQEVFER 80

Query: 139 MISRMGFSVGIPLLIGLLFFPFFYYLKVVLKIDVPSWVPVIVSFFFFGSALLGVSYGIVS 198
           M+ R+  SVG PL +G+        LK     DVP WVP + +   FGS+ LG++YG +S
Sbjct: 81  MMGRIVVSVGTPLGLGVAILKVLEVLKDRNVWDVPLWVPYLTTLVTFGSSALGIAYGSLS 140

Query: 199 SSWDPMREGSLLGWNEAQKNWPVFWQ 223
           ++ DP +  SL G  EA++NW   W+
Sbjct: 141 TNLDPAKTNSLFGLKEAKENWVEMWK 165

[Close]

BLAST of Cp4.1LG08g08940 vs. TrEMBL
Match: A0A0A0L507_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G006590 PE=4 SV=1)

HSP 1 Score: 287.3 bits (734), Expect = 1.7e-74
Identity = 156/208 (75.00%), Postives = 176/208 (84.62%), Query Frame = 1


Query: 20  MAAIAGSLNLPLAPSQLPSLHITRNYNLSIQSKSHKRNYFSLLRPSLYQNQ--TRTNHTL 79
           MAAIAGSLNLPLAPS LP L I +N   S+  KS++RN F  LRP++ QNQ  T TN   
Sbjct: 1   MAAIAGSLNLPLAPSNLPLLRIKKNCKFSLHIKSNERNCFPNLRPTINQNQNQTHTNRPT 60

Query: 80  IVNATLRSPKGFGPTPRKKKKKKKTKGGGDGEEESEDEEDEEEEEEEDRGVIPEVVTNRM 139
            +NATLR PKGFGP  RKKK KK T+  G  ++++E+EE+E+EEEEE+ GVIPEVVTNRM
Sbjct: 61  SLNATLRRPKGFGPASRKKKTKK-TRREGSEDDDNEEEEEEDEEEEEEGGVIPEVVTNRM 120

Query: 140 ISRMGFSVGIPLLIGLLFFPFFYYLKVVLKIDVPSWVPVIVSFFFFGSALLGVSYGIVSS 199
           +SRMGF+VGIPL IGLLFFPFFYYLKV LKIDVPSWVPVIVSFFFFGSALLGVSYGIVSS
Sbjct: 121 MSRMGFTVGIPLFIGLLFFPFFYYLKVGLKIDVPSWVPVIVSFFFFGSALLGVSYGIVSS 180

Query: 200 SWDPMREGSLLGWNEAQKNWPVFWQSIW 226
           SWDP+REGSLLGWNEAQKNWPVFW+SIW
Sbjct: 181 SWDPLREGSLLGWNEAQKNWPVFWKSIW 207

[Close]

BLAST of Cp4.1LG08g08940 vs. TrEMBL
Match: A0A0D2MZZ6_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_004G178900 PE=4 SV=1)

HSP 1 Score: 241.5 bits (615), Expect = 1.1e-60
Identity = 124/158 (78.48%), Postives = 138/158 (87.34%), Query Frame = 1


Query: 68  QNQTRTNHTLIVNATLRSPKGFGPTPRKKKKKKKTKGGGDGEEESEDEEDEEEEEEEDRG 127
           QNQ R  + L ++ATL SPKGFG  P+K KK KK+K GGD  EE E+EE+EEEE E + G
Sbjct: 23  QNQIRPLYLLPIHATLNSPKGFGSPPKKNKKTKKSKSGGDDNEEEEEEEEEEEENEAEAG 82

Query: 128 VIPEVVTNRMISRMGFSVGIPLLIGLLFFPFFYYLKVVLKIDVPSWVPVIVSFFFFGSAL 187
           VIPEVVTNRMISRMGF+VGIPLL+GLLFFPFFYYLKV LKIDVP+WVP IVSF FFG+AL
Sbjct: 83  VIPEVVTNRMISRMGFTVGIPLLVGLLFFPFFYYLKVELKIDVPTWVPFIVSFIFFGTAL 142

Query: 188 LGVSYGIVSSSWDPMREGSLLGWNEAQKNWPVFWQSIW 226
           LGVSYGIVSSSWDP+REGS+LGWNEAQKNWPVFWQSIW
Sbjct: 143 LGVSYGIVSSSWDPLREGSVLGWNEAQKNWPVFWQSIW 180

[Close]

BLAST of Cp4.1LG08g08940 vs. TrEMBL
Match: A0A0D2R6P9_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_004G178900 PE=4 SV=1)

HSP 1 Score: 241.5 bits (615), Expect = 1.1e-60
Identity = 124/158 (78.48%), Postives = 138/158 (87.34%), Query Frame = 1


Query: 68  QNQTRTNHTLIVNATLRSPKGFGPTPRKKKKKKKTKGGGDGEEESEDEEDEEEEEEEDRG 127
           QNQ R  + L ++ATL SPKGFG  P+K KK KK+K GGD  EE E+EE+EEEE E + G
Sbjct: 44  QNQIRPLYLLPIHATLNSPKGFGSPPKKNKKTKKSKSGGDDNEEEEEEEEEEEENEAEAG 103

Query: 128 VIPEVVTNRMISRMGFSVGIPLLIGLLFFPFFYYLKVVLKIDVPSWVPVIVSFFFFGSAL 187
           VIPEVVTNRMISRMGF+VGIPLL+GLLFFPFFYYLKV LKIDVP+WVP IVSF FFG+AL
Sbjct: 104 VIPEVVTNRMISRMGFTVGIPLLVGLLFFPFFYYLKVELKIDVPTWVPFIVSFIFFGTAL 163

Query: 188 LGVSYGIVSSSWDPMREGSLLGWNEAQKNWPVFWQSIW 226
           LGVSYGIVSSSWDP+REGS+LGWNEAQKNWPVFWQSIW
Sbjct: 164 LGVSYGIVSSSWDPLREGSVLGWNEAQKNWPVFWQSIW 201

[Close]

BLAST of Cp4.1LG08g08940 vs. TrEMBL
Match: A0A061GE46_THECC (PAM68, chloroplastic, putative isoform 3 OS=Theobroma cacao GN=TCM_016667 PE=4 SV=1)

HSP 1 Score: 235.0 bits (598), Expect = 1.0e-58
Identity = 121/158 (76.58%), Postives = 140/158 (88.61%), Query Frame = 1


Query: 68  QNQTRTNHTLIVNATLRSPKGFGPTPRKKKKKKKTKGGGDGEEESEDEEDEEEEEEEDRG 127
           +NQ R+ + + + ATL SP+GFGP P+K KK KK+K G D +EE +D+++EEEE E + G
Sbjct: 77  RNQVRSLYLVPLYATLNSPRGFGPPPKKNKKTKKSKSG-DVKEEEDDDDEEEEEFEPEAG 136

Query: 128 VIPEVVTNRMISRMGFSVGIPLLIGLLFFPFFYYLKVVLKIDVPSWVPVIVSFFFFGSAL 187
           VIPE+VTNRMISRMGFSVG+PL IGLLFFPFFYYLKVVLKIDVP+WVP IVSFFFFG+AL
Sbjct: 137 VIPEIVTNRMISRMGFSVGVPLFIGLLFFPFFYYLKVVLKIDVPTWVPFIVSFFFFGTAL 196

Query: 188 LGVSYGIVSSSWDPMREGSLLGWNEAQKNWPVFWQSIW 226
           LGVSYGIVSSSWDP+REGSLLGWNEAQKNWPVFWQSIW
Sbjct: 197 LGVSYGIVSSSWDPLREGSLLGWNEAQKNWPVFWQSIW 233

[Close]

BLAST of Cp4.1LG08g08940 vs. TrEMBL
Match: A0A061G821_THECC (PAM68, chloroplastic, putative isoform 1 OS=Theobroma cacao GN=TCM_016667 PE=4 SV=1)

HSP 1 Score: 235.0 bits (598), Expect = 1.0e-58
Identity = 121/158 (76.58%), Postives = 140/158 (88.61%), Query Frame = 1


Query: 68  QNQTRTNHTLIVNATLRSPKGFGPTPRKKKKKKKTKGGGDGEEESEDEEDEEEEEEEDRG 127
           +NQ R+ + + + ATL SP+GFGP P+K KK KK+K G D +EE +D+++EEEE E + G
Sbjct: 77  RNQVRSLYLVPLYATLNSPRGFGPPPKKNKKTKKSKSG-DVKEEEDDDDEEEEEFEPEAG 136

Query: 128 VIPEVVTNRMISRMGFSVGIPLLIGLLFFPFFYYLKVVLKIDVPSWVPVIVSFFFFGSAL 187
           VIPE+VTNRMISRMGFSVG+PL IGLLFFPFFYYLKVVLKIDVP+WVP IVSFFFFG+AL
Sbjct: 137 VIPEIVTNRMISRMGFSVGVPLFIGLLFFPFFYYLKVVLKIDVPTWVPFIVSFFFFGTAL 196

Query: 188 LGVSYGIVSSSWDPMREGSLLGWNEAQKNWPVFWQSIW 226
           LGVSYGIVSSSWDP+REGSLLGWNEAQKNWPVFWQSIW
Sbjct: 197 LGVSYGIVSSSWDPLREGSLLGWNEAQKNWPVFWQSIW 233

[Close]

BLAST of Cp4.1LG08g08940 vs. TAIR10
Match: AT4G19100.1 (AT4G19100.1 Protein of unknown function (DUF3464))

HSP 1 Score: 221.9 bits (564), Expect = 4.4e-58
Identity = 112/160 (70.00%), Postives = 135/160 (84.38%), Query Frame = 1


Query: 69  NQTRTNHTLIVNATLRSPKGFGPTPRKKKKKKKTKGGG--DGEEESEDEEDEEEEEEEDR 128
           N+   +    ++AT+ SPKGFGP P+K KK KK K G   D +++ EDE+D++EE+E +R
Sbjct: 50  NRLEISRIAPLHATMNSPKGFGPPPKKTKKSKKPKPGNQSDEDDDDEDEDDDDEEDERER 109

Query: 129 GVIPEVVTNRMISRMGFSVGIPLLIGLLFFPFFYYLKVVLKIDVPSWVPVIVSFFFFGSA 188
           GVIPE+VTNRMISRMGF+VG+PL IGLLFFPFFYYLKV LK+DVP+WVP IVSF FFG+A
Sbjct: 110 GVIPEIVTNRMISRMGFTVGLPLFIGLLFFPFFYYLKVGLKVDVPTWVPFIVSFVFFGTA 169

Query: 189 LLGVSYGIVSSSWDPMREGSLLGWNEAQKNWPVFWQSIWS 227
           L GVSYGIVSSSWDP+REGSLLGWNEA+KNWPVFWQS W+
Sbjct: 170 LAGVSYGIVSSSWDPLREGSLLGWNEAKKNWPVFWQSFWN 209

[Close]

BLAST of Cp4.1LG08g08940 vs. TAIR10
Match: AT5G52780.1 (AT5G52780.1 Protein of unknown function (DUF3464))

HSP 1 Score: 61.6 bits (148), Expect = 7.7e-10
Identity = 50/146 (34.25%), Postives = 73/146 (50.00%), Query Frame = 1


Query: 79  VNATLRSPKGFGPTPRKKKKKKKTKGGGDGEEESEDEED--EEEEEEEDRGVIPEVVTNR 138
           V     +PK   P   K + + K   G  G + S   E     + + ED   IP+ V  R
Sbjct: 21  VKTKSHNPKTLYPN-NKPRWESKLHAGPKGFQSSRTSEKPGRPDPDPEDDPPIPQEVFER 80

Query: 139 MISRMGFSVGIPLLIGLLFFPFFYYLKVVLKIDVPSWVPVIVSFFFFGSALLGVSYGIVS 198
           M+ R+  SVG PL +G+        LK     DVP WVP + +   FGS+ LG++YG +S
Sbjct: 81  MMGRIVVSVGTPLGLGVAILKVLEVLKDRNVWDVPLWVPYLTTLVTFGSSALGIAYGSLS 140

Query: 199 SSWDPMREGSLLGWNEAQKNWPVFWQ 223
           ++ DP +  SL G  EA++NW   W+
Sbjct: 141 TNLDPAKTNSLFGLKEAKENWVEMWK 165

[Close]

BLAST of Cp4.1LG08g08940 vs. NCBI nr
Match: gi|659095484|ref|XP_008448605.1| (PREDICTED: protein PAM68, chloroplastic isoform X2 [Cucumis melo])

HSP 1 Score: 301.2 bits (770), Expect = 1.6e-78
Identity = 164/211 (77.73%), Postives = 177/211 (83.89%), Query Frame = 1


Query: 20  MAAIAGSLNLPLAPSQLPSLHITRNYNLSIQSKSHKRNYFSLLRPSLYQNQTRTNHTLIV 79
           MAAIAGSLNLPLAPS LP L I +N   SI  KS++RN F   RP++ QNQTRTNH   +
Sbjct: 1   MAAIAGSLNLPLAPSNLPLLRIKKNCEFSIHIKSYERNCFPNFRPTINQNQTRTNHPTSL 60

Query: 80  NATLRSPKGFGPTPRKKKKKKKTKGGG-----DGEEESEDEEDEEEEEEEDRGVIPEVVT 139
           NATLR PKGFGP PRKKK KK TKG G     + E+E ED E+EE+ EEE+ GVIPEVVT
Sbjct: 61  NATLRRPKGFGPAPRKKKMKK-TKGEGREDDDNDEDEEEDNEEEEDNEEEEGGVIPEVVT 120

Query: 140 NRMISRMGFSVGIPLLIGLLFFPFFYYLKVVLKIDVPSWVPVIVSFFFFGSALLGVSYGI 199
           NRM+SRMGF+VGIPL IGLLFFPFFYYLKV LKIDVPSWVPVIVSFFFFGSALLGVSYGI
Sbjct: 121 NRMMSRMGFTVGIPLFIGLLFFPFFYYLKVGLKIDVPSWVPVIVSFFFFGSALLGVSYGI 180

Query: 200 VSSSWDPMREGSLLGWNEAQKNWPVFWQSIW 226
           VSSSWDPMREGSLLGWNEAQKNWPVFWQSIW
Sbjct: 181 VSSSWDPMREGSLLGWNEAQKNWPVFWQSIW 210

[Close]

BLAST of Cp4.1LG08g08940 vs. NCBI nr
Match: gi|659095482|ref|XP_008448604.1| (PREDICTED: protein PAM68, chloroplastic isoform X1 [Cucumis melo])

HSP 1 Score: 296.6 bits (758), Expect = 4.0e-77
Identity = 164/212 (77.36%), Postives = 177/212 (83.49%), Query Frame = 1


Query: 20  MAAIAGSLNLPLAPSQLPSLHIT-RNYNLSIQSKSHKRNYFSLLRPSLYQNQTRTNHTLI 79
           MAAIAGSLNLPLAPS LP L I  +N   SI  KS++RN F   RP++ QNQTRTNH   
Sbjct: 1   MAAIAGSLNLPLAPSNLPLLRIKQKNCEFSIHIKSYERNCFPNFRPTINQNQTRTNHPTS 60

Query: 80  VNATLRSPKGFGPTPRKKKKKKKTKGGG-----DGEEESEDEEDEEEEEEEDRGVIPEVV 139
           +NATLR PKGFGP PRKKK KK TKG G     + E+E ED E+EE+ EEE+ GVIPEVV
Sbjct: 61  LNATLRRPKGFGPAPRKKKMKK-TKGEGREDDDNDEDEEEDNEEEEDNEEEEGGVIPEVV 120

Query: 140 TNRMISRMGFSVGIPLLIGLLFFPFFYYLKVVLKIDVPSWVPVIVSFFFFGSALLGVSYG 199
           TNRM+SRMGF+VGIPL IGLLFFPFFYYLKV LKIDVPSWVPVIVSFFFFGSALLGVSYG
Sbjct: 121 TNRMMSRMGFTVGIPLFIGLLFFPFFYYLKVGLKIDVPSWVPVIVSFFFFGSALLGVSYG 180

Query: 200 IVSSSWDPMREGSLLGWNEAQKNWPVFWQSIW 226
           IVSSSWDPMREGSLLGWNEAQKNWPVFWQSIW
Sbjct: 181 IVSSSWDPMREGSLLGWNEAQKNWPVFWQSIW 211

[Close]

BLAST of Cp4.1LG08g08940 vs. NCBI nr
Match: gi|449456765|ref|XP_004146119.1| (PREDICTED: protein PAM68, chloroplastic isoform X2 [Cucumis sativus])

HSP 1 Score: 287.3 bits (734), Expect = 2.4e-74
Identity = 156/208 (75.00%), Postives = 176/208 (84.62%), Query Frame = 1


Query: 20  MAAIAGSLNLPLAPSQLPSLHITRNYNLSIQSKSHKRNYFSLLRPSLYQNQ--TRTNHTL 79
           MAAIAGSLNLPLAPS LP L I +N   S+  KS++RN F  LRP++ QNQ  T TN   
Sbjct: 1   MAAIAGSLNLPLAPSNLPLLRIKKNCKFSLHIKSNERNCFPNLRPTINQNQNQTHTNRPT 60

Query: 80  IVNATLRSPKGFGPTPRKKKKKKKTKGGGDGEEESEDEEDEEEEEEEDRGVIPEVVTNRM 139
            +NATLR PKGFGP  RKKK KK T+  G  ++++E+EE+E+EEEEE+ GVIPEVVTNRM
Sbjct: 61  SLNATLRRPKGFGPASRKKKTKK-TRREGSEDDDNEEEEEEDEEEEEEGGVIPEVVTNRM 120

Query: 140 ISRMGFSVGIPLLIGLLFFPFFYYLKVVLKIDVPSWVPVIVSFFFFGSALLGVSYGIVSS 199
           +SRMGF+VGIPL IGLLFFPFFYYLKV LKIDVPSWVPVIVSFFFFGSALLGVSYGIVSS
Sbjct: 121 MSRMGFTVGIPLFIGLLFFPFFYYLKVGLKIDVPSWVPVIVSFFFFGSALLGVSYGIVSS 180

Query: 200 SWDPMREGSLLGWNEAQKNWPVFWQSIW 226
           SWDP+REGSLLGWNEAQKNWPVFW+SIW
Sbjct: 181 SWDPLREGSLLGWNEAQKNWPVFWKSIW 207

[Close]

BLAST of Cp4.1LG08g08940 vs. NCBI nr
Match: gi|778674883|ref|XP_011650314.1| (PREDICTED: protein PAM68, chloroplastic isoform X1 [Cucumis sativus])

HSP 1 Score: 282.7 bits (722), Expect = 6.0e-73
Identity = 156/209 (74.64%), Postives = 176/209 (84.21%), Query Frame = 1


Query: 20  MAAIAGSLNLPLAPSQLPSLHIT-RNYNLSIQSKSHKRNYFSLLRPSLYQNQ--TRTNHT 79
           MAAIAGSLNLPLAPS LP L I  +N   S+  KS++RN F  LRP++ QNQ  T TN  
Sbjct: 1   MAAIAGSLNLPLAPSNLPLLRIKQKNCKFSLHIKSNERNCFPNLRPTINQNQNQTHTNRP 60

Query: 80  LIVNATLRSPKGFGPTPRKKKKKKKTKGGGDGEEESEDEEDEEEEEEEDRGVIPEVVTNR 139
             +NATLR PKGFGP  RKKK KK T+  G  ++++E+EE+E+EEEEE+ GVIPEVVTNR
Sbjct: 61  TSLNATLRRPKGFGPASRKKKTKK-TRREGSEDDDNEEEEEEDEEEEEEGGVIPEVVTNR 120

Query: 140 MISRMGFSVGIPLLIGLLFFPFFYYLKVVLKIDVPSWVPVIVSFFFFGSALLGVSYGIVS 199
           M+SRMGF+VGIPL IGLLFFPFFYYLKV LKIDVPSWVPVIVSFFFFGSALLGVSYGIVS
Sbjct: 121 MMSRMGFTVGIPLFIGLLFFPFFYYLKVGLKIDVPSWVPVIVSFFFFGSALLGVSYGIVS 180

Query: 200 SSWDPMREGSLLGWNEAQKNWPVFWQSIW 226
           SSWDP+REGSLLGWNEAQKNWPVFW+SIW
Sbjct: 181 SSWDPLREGSLLGWNEAQKNWPVFWKSIW 208

[Close]

BLAST of Cp4.1LG08g08940 vs. NCBI nr
Match: gi|823151485|ref|XP_012475569.1| (PREDICTED: protein PAM68, chloroplastic isoform X2 [Gossypium raimondii])

HSP 1 Score: 241.5 bits (615), Expect = 1.5e-60
Identity = 124/158 (78.48%), Postives = 138/158 (87.34%), Query Frame = 1


Query: 68  QNQTRTNHTLIVNATLRSPKGFGPTPRKKKKKKKTKGGGDGEEESEDEEDEEEEEEEDRG 127
           QNQ R  + L ++ATL SPKGFG  P+K KK KK+K GGD  EE E+EE+EEEE E + G
Sbjct: 23  QNQIRPLYLLPIHATLNSPKGFGSPPKKNKKTKKSKSGGDDNEEEEEEEEEEEENEAEAG 82

Query: 128 VIPEVVTNRMISRMGFSVGIPLLIGLLFFPFFYYLKVVLKIDVPSWVPVIVSFFFFGSAL 187
           VIPEVVTNRMISRMGF+VGIPLL+GLLFFPFFYYLKV LKIDVP+WVP IVSF FFG+AL
Sbjct: 83  VIPEVVTNRMISRMGFTVGIPLLVGLLFFPFFYYLKVELKIDVPTWVPFIVSFIFFGTAL 142

Query: 188 LGVSYGIVSSSWDPMREGSLLGWNEAQKNWPVFWQSIW 226
           LGVSYGIVSSSWDP+REGS+LGWNEAQKNWPVFWQSIW
Sbjct: 143 LGVSYGIVSSSWDPLREGSVLGWNEAQKNWPVFWQSIW 180

The following BLAST results are available for this feature:

BLAST of Cp4.1LG08g08940 vs. Swiss-Prot


Match Name	E-value	Identity	Description
PAM68_ARATH	7.9e-57	70.00	Protein PAM68, chloroplastic OS=Arabidopsis thaliana GN=PAM68 PE=1 SV=1	[more]
Y5278_ARATH	1.4e-08	34.25	Uncharacterized protein PAM68-like OS=Arabidopsis thaliana GN=At5g52780 PE=2 SV=...	[more]

BLAST of Cp4.1LG08g08940 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L507_CUCSA	1.7e-74	75.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G006590 PE=4 SV=1	[more]
A0A0D2MZZ6_GOSRA	1.1e-60	78.48	Uncharacterized protein OS=Gossypium raimondii GN=B456_004G178900 PE=4 SV=1	[more]
A0A0D2R6P9_GOSRA	1.1e-60	78.48	Uncharacterized protein OS=Gossypium raimondii GN=B456_004G178900 PE=4 SV=1	[more]
A0A061GE46_THECC	1.0e-58	76.58	PAM68, chloroplastic, putative isoform 3 OS=Theobroma cacao GN=TCM_016667 PE=4 S...	[more]
A0A061G821_THECC	1.0e-58	76.58	PAM68, chloroplastic, putative isoform 1 OS=Theobroma cacao GN=TCM_016667 PE=4 S...	[more]

BLAST of Cp4.1LG08g08940 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G19100.1	4.4e-58	70.00	Protein of unknown function (DUF3464)	[more]
AT5G52780.1	7.7e-10	34.25	Protein of unknown function (DUF3464)	[more]

BLAST of Cp4.1LG08g08940 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659095484\|ref\|XP_008448605.1\|	1.6e-78	77.73	PREDICTED: protein PAM68, chloroplastic isoform X2 [Cucumis melo]	[more]
gi\|659095482\|ref\|XP_008448604.1\|	4.0e-77	77.36	PREDICTED: protein PAM68, chloroplastic isoform X1 [Cucumis melo]	[more]
gi\|449456765\|ref\|XP_004146119.1\|	2.4e-74	75.00	PREDICTED: protein PAM68, chloroplastic isoform X2 [Cucumis sativus]	[more]
gi\|778674883\|ref\|XP_011650314.1\|	6.0e-73	74.64	PREDICTED: protein PAM68, chloroplastic isoform X1 [Cucumis sativus]	[more]
gi\|823151485\|ref\|XP_012475569.1\|	1.5e-60	78.48	PREDICTED: protein PAM68, chloroplastic isoform X2 [Gossypium raimondii]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR021855	PAM68-like

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0044237	cellular metabolic process
biological_process	GO:0008150	biological_process
biological_process	GO:0016556	mRNA modification
biological_process	GO:0010207	photosystem II assembly
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG08g08940.1	Cp4.1LG08g08940.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR021855	Protein of unknown function DUF3464	PFAM	PF11947	DUF3464	coord: 92..223 score: 3.7
None	No IPR available	PANTHER	PTHR34575	FAMILY NOT NAMED	coord: 21..225 score: 3.1
None	No IPR available	PANTHER	PTHR34575:SF2	SUBFAMILY NOT NAMED	coord: 21..225 score: 3.1

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG08g08940	Cucsa.322300	Cucumber (Gy14) v1	cgycpeB0854
Cp4.1LG08g08940	CmaCh06G006070	Cucurbita maxima (Rimu)	cmacpeB852
Cp4.1LG08g08940	CmoCh06G006130	Cucurbita moschata (Rifu)	cmocpeB797
Cp4.1LG08g08940	Cla008859	Watermelon (97103) v1	cpewmB829
Cp4.1LG08g08940	Csa3G006590	Cucumber (Chinese Long) v2	cpecuB863
Cp4.1LG08g08940	MELO3C013801	Melon (DHL92) v3.5.1	cpemeB808
Cp4.1LG08g08940	ClCG10G001090	Watermelon (Charleston Gray)	cpewcgB772
Cp4.1LG08g08940	CSPI03G01080	Wild cucumber (PI 183967)	cpecpiB865
Cp4.1LG08g08940	Lsi07G011410	Bottle gourd (USVL1VR-Ls)	cpelsiB725
Cp4.1LG08g08940	MELO3C013801.2	Melon (DHL92) v3.6.1	cpemedB952
Cp4.1LG08g08940	CsaV3_3G001110	Cucumber (Chinese Long) v3	cpecucB1059
Cp4.1LG08g08940	CsGy3G001020	Cucumber (Gy14) v2	cgybcpeB456
Cp4.1LG08g08940	Carg16294	Silver-seed gourd	carcpeB0957

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG08g08940	Cucurbita pepo (Zucchini)	cpecpeB249
Cp4.1LG08g08940	Cucurbita maxima (Rimu)	cmacpeB363
Cp4.1LG08g08940	Cucurbita moschata (Rifu)	cmocpeB327
Cp4.1LG08g08940	Silver-seed gourd	carcpeB1463