Cucsa.322300 (gene) Cucumber (Gy14) v1
The following sequences are available for this feature:
Legend: five_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.GGCGTCCGTCTCTGCTTCGCATAGTGAATACAAGATGTAAGAGACGAGTCGACTGTATTTCAGTTTCATAGACAAACCTTAATGGCCGCCATTGCCGGATCTCTCAACCTTCCTCTTGCGCCTTCAAACCTTCCATTACTCCGCATTAAGGTACTCTTCTCATTTCGCTTCCCCATTGCAACATTTCTTTGAGTTCTGTAACAACCTTTTCTACTATAACTACTTCAAATTATACCTAAACGATGAAGTATTCCTGAATCCGAACTGTTTATCAATGGATTATCCATAAGTTCATCAATCAACAATCGATTTCTTAAAGATTAGGAGTTAGGATTTACTTTATCAGGGATACTTGTTAAACCTAGAACGATCCATTGATCCATTCCAATGACTACTACTTGAATTATAATGAAACGGAAGAAGACGAAGGATTCTTTAATCTGAACTATTCATCAATGGAATTTCAGTTTTGATTAGTAGTTAGGATTTAAGATGGATATCAGTAAAACCTAGCGCAGTTCATCGATTCAGTTCGATGATAACTACTTGAACGTTGAATTATATTGAAATGGAAGGAAGACGAAGGATTTTTCAAAATATCTGAACTATTGATTTTCCATTTCGATTACTTTACGAACACTAGGAGTTAAAAGGATAGTTTTGATGAACAATTGATTGTAAGAATAAAACAAGTGGTCTACTTTTATGGGGAGTAGTTTATAGTTGTTCGAGAATTGTGAGGGTGGGTGAAGAAAACAATTGTTGTTGTTGGGAAAGTTCCACAAAAGATTCTATGACTTTGGTTTGAAGTTGTCTAACTGGAATTAAATTTATTCTCTAGTTTGAGACATGTTTGCGTAGGTATTAACTTCGAATGTGTTGGGTGCTCTTTGTGAAACCTACCTCGGGCATCAAGATTTCTTTTTCCATAATTTCTAAGAAAGAGTGATAATTCCTCCAAGAAGATAAAAGAATTTACTACACCTAAACGCAAAAGAATATTGGTTTGACTGTTTGAGAGTGCGAAAACATGCGTGAATGAATGTTGCTTTTAATTATTTTTATGTAGGCTTTGGTTTTCTTCAATTTTAAAGTTTTTCACGTGTGTATCCTAGTTTCTTAAATTTTTTATGTGGCTGTAGTGAGGTTTTTTACCAAGTAGGATTGATATTTATTAAACTTAGAACGACTCGTTGATTATTTTTATTTTCTCAGCAGAAAAATTGTAAATTCTCACTTCATATAAAAAGCAACGAAAGAAACTGTTTCCCAAATTTAAGACCAACCATTAACCAAAACCAAAACCAAACTCACACGAACCGCCCCACAAGTCTAAATGCAACATTGAGGCGTCCGAAGGGATTCGGACCAGCTTCAAGGAAGAAGAAGACGAAGAAAACAAGAAGAGAAGGAAGTGAGGATGATGACAACGAGGAGGAGGAAGAGGAAGACGAGGAGGAGGAAGAGGAAGGTGGTGTAATACCAGAAGTAGTGACAAATAGGATGATGAGTAGAATGGGATTTACAGTGGGGATTCCATTGTTTATAGGGCTATTGTTCTTCCCATTCTTCTATTACCTCAAAGTTGGGCTGAAGATTGATGTGCCCTCATGGGTGCCAGTCATAGTCTCATTCTTCTTCTTTGGTTCAGCTCTTTTGGGAGTTAGCTATGGGATTGTGTCCTCTAGTTGGGATCCTTTGAGGGAAGGCTCTTTATTGGGTTGGAATGAAGCTCAGAAGAATTGGCCTGTTTTTTGGAAGTCCATTTGGGGTGGATCTAATAAGAAATAGATGAATTGCCTTTTTATCTTCTTCCTTTTTTTTTttCTTTCTTTCTTATGTTCTTCTTCGATAAATATTATAGTTTCTTAGGAGTGACGTGAGAAGCAAAAaCGAGTATAGTTCAACTAGCATATTGTATTTGTTGGCAATCAAGAAGTTCGTAGTTCGTCAAGTTGAGTTTTAGCTCAATAGTAATCAATAATAGTCTTCGAAGTTTA GGCGTCCGTCTCTGCTTCGCATAGTGAATACAAGATGTAAGAGACGAGTCGACTGTATTTCAGTTTCATAGACAAACCTTAATGGCCGCCATTGCCGGATCTCTCAACCTTCCTCTTGCGCCTTCAAACCTTCCATTACTCCGCATTAAGCAGAAAAATTGTAAATTCTCACTTCATATAAAAAGCAACGAAAGAAACTGTTTCCCAAATTTAAGACCAACCATTAACCAAAACCAAAACCAAACTCACACGAACCGCCCCACAAGTCTAAATGCAACATTGAGGCGTCCGAAGGGATTCGGACCAGCTTCAAGGAAGAAGAAGACGAAGAAAACAAGAAGAGAAGGAAGTGAGGATGATGACAACgaggaggaggaagaggaagacgaggaggaggaagaggaAGGTGGTGTAATACCAGAAGTAGTGACAAATAGGATGATGAGTAGAATGGGATTTACAGTGGGGATTCCATTGTTTATAGGGCTATTGTTCTTCCCATTCTTCTATTACCTCAAAGTTGGGCTGAAGATTGATGTGCCCTCATGGGTGCCAGTCATAGTCTCATTCTTCTTCTTTGGTTCAGCTCTTTTGGGAGTTAGCTATGGGATTGTGTCCTCTAGTTGGGATCCTTTGAGGGAAGGCTCTTTATTGGGTTGGAATGAAGCTCAGAAGAATTGGCCTGTTTTTTGGAAGTCCATTTGGGGTGGATCTAATAAGAAATAGATGAATTGCCTTTTTATCttcttcctttttttttttctttctttcttATGTTCTTCTTCGATAAATATTATAGTTTCTTAGGAGTGACGTGAGAAGCAAAAACGAGTATAGTTCAACTAGCATATTGTATTTGTTGGCAATCAAGAAGTTCGTAGTTCGTCAAGTTGAGTTTTAGCTCAATAGTAATCAATAATAGTCTTCGAAGTTTA ATGGCCGCCATTGCCGGATCTCTCAACCTTCCTCTTGCGCCTTCAAACCTTCCATTACTCCGCATTAAGCAGAAAAATTGTAAATTCTCACTTCATATAAAAAGCAACGAAAGAAACTGTTTCCCAAATTTAAGACCAACCATTAACCAAAACCAAAACCAAACTCACACGAACCGCCCCACAAGTCTAAATGCAACATTGAGGCGTCCGAAGGGATTCGGACCAGCTTCAAGGAAGAAGAAGACGAAGAAAACAAGAAGAGAAGGAAGTGAGGATGATGACAACGAGGAGGAGGAAGAGGAAGACGAGGAGGAGGAAGAGGAAGGTGGTGTAATACCAGAAGTAGTGACAAATAGGATGATGAGTAGAATGGGATTTACAGTGGGGATTCCATTGTTTATAGGGCTATTGTTCTTCCCATTCTTCTATTACCTCAAAGTTGGGCTGAAGATTGATGTGCCCTCATGGGTGCCAGTCATAGTCTCATTCTTCTTCTTTGGTTCAGCTCTTTTGGGAGTTAGCTATGGGATTGTGTCCTCTAGTTGGGATCCTTTGAGGGAAGGCTCTTTATTGGGTTGGAATGAAGCTCAGAAGAATTGGCCTGTTTTTTGGAAGTCCATTTGGGGTGGATCTAATAAGAAATAG MAAIAGSLNLPLAPSNLPLLRIKQKNCKFSLHIKSNERNCFPNLRPTINQNQNQTHTNRPTSLNATLRRPKGFGPASRKKKTKKTRREGSEDDDNEEEEEEDEEEEEEGGVIPEVVTNRMMSRMGFTVGIPLFIGLLFFPFFYYLKVGLKIDVPSWVPVIVSFFFFGSALLGVSYGIVSSSWDPLREGSLLGWNEAQKNWPVFWKSIWGGSNKK*
BLAST of Cucsa.322300 vs. Swiss-Prot
Match: PAM68_ARATH (Protein PAM68, chloroplastic OS=Arabidopsis thaliana GN=PAM68 PE=1 SV=1) HSP 1 Score: 249.6 bits (636), Expect = 3.1e-65 Identity = 115/165 (69.70%), Postives = 138/165 (83.64%), Query Frame = 1
BLAST of Cucsa.322300 vs. Swiss-Prot
Match: Y5278_ARATH (Uncharacterized protein PAM68-like OS=Arabidopsis thaliana GN=At5g52780 PE=2 SV=1) HSP 1 Score: 85.9 bits (211), Expect = 5.9e-16 Identity = 47/147 (31.97%), Postives = 74/147 (50.34%), Query Frame = 1
BLAST of Cucsa.322300 vs. TrEMBL
Match: A0A0A0L507_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G006590 PE=4 SV=1) HSP 1 Score: 437.2 bits (1123), Expect = 1.2e-119 Identity = 213/214 (99.53%), Postives = 213/214 (99.53%), Query Frame = 1
BLAST of Cucsa.322300 vs. TrEMBL
Match: A0A022RB86_ERYGU (Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a014159mg PE=4 SV=1) HSP 1 Score: 260.8 bits (665), Expect = 1.5e-66 Identity = 130/206 (63.11%), Postives = 156/206 (75.73%), Query Frame = 1
BLAST of Cucsa.322300 vs. TrEMBL
Match: A0A068V2P5_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00042427001 PE=4 SV=1) HSP 1 Score: 255.4 bits (651), Expect = 6.3e-65 Identity = 124/201 (61.69%), Postives = 153/201 (76.12%), Query Frame = 1
BLAST of Cucsa.322300 vs. TrEMBL
Match: A0A0D2MZZ6_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_004G178900 PE=4 SV=1) HSP 1 Score: 253.8 bits (647), Expect = 1.8e-64 Identity = 120/164 (73.17%), Postives = 138/164 (84.15%), Query Frame = 1
BLAST of Cucsa.322300 vs. TrEMBL
Match: A0A0D2R6P9_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_004G178900 PE=4 SV=1) HSP 1 Score: 253.8 bits (647), Expect = 1.8e-64 Identity = 120/164 (73.17%), Postives = 138/164 (84.15%), Query Frame = 1
BLAST of Cucsa.322300 vs. TAIR10
Match: AT4G19100.1 (AT4G19100.1 Protein of unknown function (DUF3464)) HSP 1 Score: 249.6 bits (636), Expect = 1.7e-66 Identity = 115/165 (69.70%), Postives = 138/165 (83.64%), Query Frame = 1
BLAST of Cucsa.322300 vs. TAIR10
Match: AT5G52780.1 (AT5G52780.1 Protein of unknown function (DUF3464)) HSP 1 Score: 85.9 bits (211), Expect = 3.3e-17 Identity = 47/147 (31.97%), Postives = 74/147 (50.34%), Query Frame = 1
BLAST of Cucsa.322300 vs. NCBI nr
Match: gi|778674883|ref|XP_011650314.1| (PREDICTED: protein PAM68, chloroplastic isoform X1 [Cucumis sativus]) HSP 1 Score: 443.7 bits (1140), Expect = 1.8e-121 Identity = 214/214 (100.00%), Postives = 214/214 (100.00%), Query Frame = 1
BLAST of Cucsa.322300 vs. NCBI nr
Match: gi|449456765|ref|XP_004146119.1| (PREDICTED: protein PAM68, chloroplastic isoform X2 [Cucumis sativus]) HSP 1 Score: 437.2 bits (1123), Expect = 1.7e-119 Identity = 213/214 (99.53%), Postives = 213/214 (99.53%), Query Frame = 1
BLAST of Cucsa.322300 vs. NCBI nr
Match: gi|659095482|ref|XP_008448604.1| (PREDICTED: protein PAM68, chloroplastic isoform X1 [Cucumis melo]) HSP 1 Score: 399.8 bits (1026), Expect = 3.0e-108 Identity = 196/219 (89.50%), Postives = 203/219 (92.69%), Query Frame = 1
BLAST of Cucsa.322300 vs. NCBI nr
Match: gi|659095484|ref|XP_008448605.1| (PREDICTED: protein PAM68, chloroplastic isoform X2 [Cucumis melo]) HSP 1 Score: 393.3 bits (1009), Expect = 2.8e-106 Identity = 195/219 (89.04%), Postives = 202/219 (92.24%), Query Frame = 1
BLAST of Cucsa.322300 vs. NCBI nr
Match: gi|747089912|ref|XP_011092614.1| (PREDICTED: protein PAM68, chloroplastic [Sesamum indicum]) HSP 1 Score: 263.5 bits (672), Expect = 3.3e-67 Identity = 128/175 (73.14%), Postives = 145/175 (82.86%), Query Frame = 1
The following BLAST results are available for this feature:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene:
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