WMU04879 (transcribed_cluster) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	WMU04879
Type	transcribed_cluster
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Protein PAM68, chloroplastic-like protein
Location	Chr10 : 1259502 .. 1259896 (+)
Sequence length	403

Genome Viewer

Sequences

The following sequences are available for this feature:

transcribed_cluster sequence

GAAGCGAGGACGAAGACGAAAACGAAGAAGACGAAGAAGAAGAAGAGGAAGGTGGTGTAATACCAGAAGTAGTGACAAACAGGATGATTAGTAGAATGGGATTTTCAGTGGGGATTCCATTGTTGATAGGGCTTTTGTTCTTCCCATTCTTCTATTACCTCAAAGTTGGGCTGAAGATTGATGCGCCCTCATGGGGTGCCGGTTATAGTCTCATTCTTCTTCTTTGGTTCAGCTTTTGTTGGGAGTTAGCTATGGGATTGTGTCCTCTAGTTGGGATCCTATGAGGGAAGGCTCTCTGTTGGGTTGGAATGAAGCTCAAAAGAATTGGCCTGTTTTTTGGTCAGTCCATTTGGGGTGGATCTAATAAGAAATAGATGAATTGTCCTTTTTTTTTTTTTTATAT

Library


Library category	ESTs
watermelon fruit 10d library	2
watermelon fruit 18d library	1

Homology

[Close]

BLAST of WMU04879 vs. TAIR10
Match: AT4G19100.1 (AT4G19100.1 Protein of unknown function (DUF3464))

HSP 1 Score: 70.1 bits (170), Expect = 1.2e-12
Identity = 28/30 (93.33%), Postives = 28/30 (93.33%), Query Frame = 2


Query: 251 YGIVSSSWDPMREGSLLGWNEAQKNWPVFW 310
           YGIVSSSWDP+REGSLLGWNEA+KNWPVFW
Sbjct: 175 YGIVSSSWDPLREGSLLGWNEAKKNWPVFW 204

Query: 311  341
           
Sbjct: 235  204

HSP 2 Score: 52.8 bits (125), Expect = 1.9e-07
Identity = 41/121 (33.88%), Postives = 50/121 (41.32%), Query Frame = 3


Query: 54  GVIPEVVTNRMISRMGFSVXXXXXXXXXXXXXXXXXKVGLKIDAPSW------------- 113
           GVIPE+VTNRMISRMGF+V                 KVGLK+D P+W             
Sbjct: 110 GVIPEIVTNRMISRMGFTVGLPLFIGLLFFPFFYYLKVGLKVDVPTWVPFIVSFVFFGTA 169

Query: 114 --GAGYSLILLLWFSFCWELAMGLCPLVGIL*GKALCWVGMKLKRIGLFFGQSIWGGSNK 173
             G  Y ++     S  W+      PL     G  L W   + K+    F QS W  S+K
Sbjct: 170 LAGVSYGIV-----SSSWD------PLRE---GSLLGW--NEAKKNWPVFWQSFWNSSDK 214

Query: 174 K 233
           +
Sbjct: 230 R 214

Query: 234  293
           
Sbjct: 290  214

Query: 294  353
           
Sbjct: 350  214

Query: 354  372
           
Sbjct: 410  214

[Close]

BLAST of WMU04879 vs. Swiss-Prot
Match: PAM68_ARATH (Protein PAM68, chloroplastic OS=Arabidopsis thaliana GN=PAM68 PE=1 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 2.1e-11
Identity = 28/30 (93.33%), Postives = 28/30 (93.33%), Query Frame = 2


Query: 251 YGIVSSSWDPMREGSLLGWNEAQKNWPVFW 310
           YGIVSSSWDP+REGSLLGWNEA+KNWPVFW
Sbjct: 175 YGIVSSSWDPLREGSLLGWNEAKKNWPVFW 204

Query: 311  341
           
Sbjct: 235  204

HSP 2 Score: 52.8 bits (125), Expect = 3.4e-06
Identity = 41/121 (33.88%), Postives = 50/121 (41.32%), Query Frame = 3


Query: 54  GVIPEVVTNRMISRMGFSVXXXXXXXXXXXXXXXXXKVGLKIDAPSW------------- 113
           GVIPE+VTNRMISRMGF+V                 KVGLK+D P+W             
Sbjct: 110 GVIPEIVTNRMISRMGFTVGLPLFIGLLFFPFFYYLKVGLKVDVPTWVPFIVSFVFFGTA 169

Query: 114 --GAGYSLILLLWFSFCWELAMGLCPLVGIL*GKALCWVGMKLKRIGLFFGQSIWGGSNK 173
             G  Y ++     S  W+      PL     G  L W   + K+    F QS W  S+K
Sbjct: 170 LAGVSYGIV-----SSSWD------PLRE---GSLLGW--NEAKKNWPVFWQSFWNSSDK 214

Query: 174 K 233
           +
Sbjct: 230 R 214

Query: 234  293
           
Sbjct: 290  214

Query: 294  353
           
Sbjct: 350  214

Query: 354  372
           
Sbjct: 410  214

[Close]

BLAST of WMU04879 vs. TrEMBL
Match: B9S1K7_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0865870 PE=4 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 2.8e-10
Identity = 31/35 (88.57%), Postives = 31/35 (88.57%), Query Frame = 2


Query: 251 YGIVSSSWDPMREGSLLGWNEAQKNWPVFWSVHLG 310
           YGIVSSSWDPMREGSLLGWNEAQKNWPVFW    G
Sbjct: 181 YGIVSSSWDPMREGSLLGWNEAQKNWPVFWQSFWG 215

Query: 311  356
           
Sbjct: 241  215

[Close]

BLAST of WMU04879 vs. TrEMBL
Match: B9S1K7_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0865870 PE=4 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 5.9e-05
Identity = 43/114 (37.72%), Postives = 54/114 (47.37%), Query Frame = 3


Query: 54  GVIPEVVTNRMISRMGFSVXXXXXXXXXXXXXXXXXKVGLKIDAPSWGAGYSLILLLWFS 113
           G+IPEVVTNRMISRMGFSV                 KVGLKID P+W     +  ++ F 
Sbjct: 116 GIIPEVVTNRMISRMGFSVGVPLFIGLLFFPFFYYLKVGLKIDVPTW-----VPYIVSFF 175

Query: 114 FCWELAMGLCPLVGIL--------*GKALCWVGMKLKRIGLFFGQSIWGGSNKK 173
           F     +G+    GI+         G  L W   + ++    F QS WG S KK
Sbjct: 176 FFGTALLGVS--YGIVSSSWDPMREGSLLGW--NEAQKNWPVFWQSFWGRSGKK 220

Query: 174  233
           
Sbjct: 236  220

Query: 234  293
           
Sbjct: 296  220

Query: 294  353
           
Sbjct: 356  220

Query: 354  372
           
Sbjct: 416  220

HSP 2 Score: 71.6 bits (174), Expect = 8.0e-10
Identity = 29/30 (96.67%), Postives = 30/30 (100.00%), Query Frame = 2


Query: 251 YGIVSSSWDPMREGSLLGWNEAQKNWPVFW 310
           YGIVSSSWDP+REGSLLGWNEAQKNWPVFW
Sbjct: 175 YGIVSSSWDPLREGSLLGWNEAQKNWPVFW 204

Query: 311  341
           
Sbjct: 235  204

[Close]

BLAST of WMU04879 vs. TrEMBL
Match: A0A067KK85_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10801 PE=4 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 2.0e-05
Identity = 43/114 (37.72%), Postives = 55/114 (48.25%), Query Frame = 3


Query: 54  GVIPEVVTNRMISRMGFSVXXXXXXXXXXXXXXXXXKVGLKIDAPSWGAGYSLILLLWFS 113
           G+IPEVVTNRMISRMGFSV                 KVGLKID P+W     +  ++ F 
Sbjct: 110 GIIPEVVTNRMISRMGFSVGIPLFIGLLFFPFFYYLKVGLKIDVPTW-----VPFIVSFF 169

Query: 114 FCWELAMGLCPLVGIL--------*GKALCWVGMKLKRIGLFFGQSIWGGSNKK 173
           F     +G+    GI+         G  L W   + ++    F QS+WG S KK
Sbjct: 170 FFGSALLGVS--YGIVSSSWDPLREGSLLGW--NEAQKNWPVFWQSLWGRSGKK 214

Query: 174  233
           
Sbjct: 230  214

Query: 234  293
           
Sbjct: 290  214

Query: 294  353
           
Sbjct: 350  214

Query: 354  372
           
Sbjct: 410  214

HSP 2 Score: 71.6 bits (174), Expect = 8.0e-10
Identity = 29/30 (96.67%), Postives = 30/30 (100.00%), Query Frame = 2


Query: 251 YGIVSSSWDPMREGSLLGWNEAQKNWPVFW 310
           YGIVSSSWDP+REGSLLGWNEAQKNWPVFW
Sbjct: 140 YGIVSSSWDPLREGSLLGWNEAQKNWPVFW 169

Query: 311  341
           
Sbjct: 200  169

[Close]

BLAST of WMU04879 vs. TrEMBL
Match: A0A059CJY0_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_D02600 PE=4 SV=1)

HSP 1 Score: 52.0 bits (123), Expect = 6.5e-04
Identity = 26/47 (55.32%), Postives = 29/47 (61.70%), Query Frame = 3


Query: 54  GVIPEVVTNRMISRMGFSVXXXXXXXXXXXXXXXXXKVGLKIDAPSW 113
           GVIPEVVTNRM++RMGFSV                 KVGLKID P+W
Sbjct: 75  GVIPEVVTNRMMNRMGFSVGVPLFIGLLFFPFFYYLKVGLKIDVPTW 121

Query: 114  173
           
Sbjct: 135  121

Query: 174  195
           
Sbjct: 195  121

HSP 2 Score: 71.6 bits (174), Expect = 8.0e-10
Identity = 29/30 (96.67%), Postives = 30/30 (100.00%), Query Frame = 2


Query: 251 YGIVSSSWDPMREGSLLGWNEAQKNWPVFW 310
           YGIVSSSWDP+REGSLLGWNEAQKNWPVFW
Sbjct: 179 YGIVSSSWDPLREGSLLGWNEAQKNWPVFW 208

Query: 311  341
           
Sbjct: 239  208

[Close]

BLAST of WMU04879 vs. TrEMBL
Match: A0A059CKM2_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_D02600 PE=4 SV=1)

HSP 1 Score: 52.0 bits (123), Expect = 6.5e-04
Identity = 26/47 (55.32%), Postives = 29/47 (61.70%), Query Frame = 3


Query: 54  GVIPEVVTNRMISRMGFSVXXXXXXXXXXXXXXXXXKVGLKIDAPSW 113
           GVIPEVVTNRM++RMGFSV                 KVGLKID P+W
Sbjct: 114 GVIPEVVTNRMMNRMGFSVGVPLFIGLLFFPFFYYLKVGLKIDVPTW 160

Query: 114  173
           
Sbjct: 174  160

Query: 174  195
           
Sbjct: 234  160

HSP 2 Score: 71.6 bits (174), Expect = 8.0e-10
Identity = 29/30 (96.67%), Postives = 30/30 (100.00%), Query Frame = 2


Query: 251 YGIVSSSWDPMREGSLLGWNEAQKNWPVFW 310
           YGIVSSSWDP+REGSLLGWNEAQKNWPVFW
Sbjct: 174 YGIVSSSWDPLREGSLLGWNEAQKNWPVFW 203

Query: 311  341
           
Sbjct: 234  203

[Close]

BLAST of WMU04879 vs. NCBI nr
Match: gi|255557685|ref|XP_002519872.1| (PREDICTED: protein PAM68, chloroplastic [Ricinus communis])

HSP 1 Score: 75.1 bits (183), Expect = 1.0e-10
Identity = 31/35 (88.57%), Postives = 31/35 (88.57%), Query Frame = 2


Query: 251 YGIVSSSWDPMREGSLLGWNEAQKNWPVFWSVHLG 310
           YGIVSSSWDPMREGSLLGWNEAQKNWPVFW    G
Sbjct: 181 YGIVSSSWDPMREGSLLGWNEAQKNWPVFWQSFWG 215

Query: 311  356
           
Sbjct: 241  215

[Close]

BLAST of WMU04879 vs. NCBI nr
Match: gi|470128440|ref|XP_004300149.1| (PREDICTED: protein PAM68, chloroplastic [Fragaria vesca subsp. vesca])

HSP 1 Score: 73.9 bits (180), Expect = 2.3e-10
Identity = 30/30 (100.00%), Postives = 30/30 (100.00%), Query Frame = 2


Query: 251 YGIVSSSWDPMREGSLLGWNEAQKNWPVFW 310
           YGIVSSSWDPMREGSLLGWNEAQKNWPVFW
Sbjct: 173 YGIVSSSWDPMREGSLLGWNEAQKNWPVFW 202

Query: 311  341
           
Sbjct: 233  202

[Close]

BLAST of WMU04879 vs. NCBI nr
Match: gi|659095484|ref|XP_008448605.1| (PREDICTED: protein PAM68, chloroplastic isoform X2 [Cucumis melo])

HSP 1 Score: 73.9 bits (180), Expect = 2.3e-10
Identity = 30/30 (100.00%), Postives = 30/30 (100.00%), Query Frame = 2


Query: 251 YGIVSSSWDPMREGSLLGWNEAQKNWPVFW 310
           YGIVSSSWDPMREGSLLGWNEAQKNWPVFW
Sbjct: 177 YGIVSSSWDPMREGSLLGWNEAQKNWPVFW 206

Query: 311  341
           
Sbjct: 237  206

[Close]

BLAST of WMU04879 vs. NCBI nr
Match: gi|659095482|ref|XP_008448604.1| (PREDICTED: protein PAM68, chloroplastic isoform X1 [Cucumis melo])

HSP 1 Score: 73.9 bits (180), Expect = 2.3e-10
Identity = 30/30 (100.00%), Postives = 30/30 (100.00%), Query Frame = 2


Query: 251 YGIVSSSWDPMREGSLLGWNEAQKNWPVFW 310
           YGIVSSSWDPMREGSLLGWNEAQKNWPVFW
Sbjct: 178 YGIVSSSWDPMREGSLLGWNEAQKNWPVFW 207

Query: 311  341
           
Sbjct: 238  207

[Close]

BLAST of WMU04879 vs. NCBI nr
Match: gi|629113486|gb|KCW78446.1| (hypothetical protein EUGRSUZ_D02600 [Eucalyptus grandis])

HSP 1 Score: 72.8 bits (177), Expect = 5.2e-10
Identity = 29/30 (96.67%), Postives = 30/30 (100.00%), Query Frame = 2


Query: 251 YGIVSSSWDPMREGSLLGWNEAQKNWPVFW 310
           YGIVSSSWDP+REGSLLGWNEAQKNWPVFW
Sbjct: 140 YGIVSSSWDPLREGSLLGWNEAQKNWPVFW 169

Query: 311  341
           
Sbjct: 200  169

The following BLAST results are available for this feature:

BLAST of WMU04879 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G19100.1	1.2e-12	93.33	Protein of unknown function (DUF3464)	[more]

BLAST of WMU04879 vs. Swiss-Prot


Match Name	E-value	Identity	Description
PAM68_ARATH	2.1e-11	93.33	Protein PAM68, chloroplastic OS=Arabidopsis thaliana GN=PAM68 PE=1 SV=1	[more]

BLAST of WMU04879 vs. TrEMBL


Match Name	E-value	Identity	Description
B9S1K7_RICCO	2.8e-10	88.57	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0865870 PE=4 SV=1	[more]
B9S1K7_RICCO	5.9e-05	37.72	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0865870 PE=4 SV=1	[more]
A0A067KK85_JATCU	2.0e-05	37.72	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10801 PE=4 SV=1	[more]
A0A059CJY0_EUCGR	6.5e-04	55.32	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_D02600 PE=4 SV=1	[more]
A0A059CKM2_EUCGR	6.5e-04	55.32	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_D02600 PE=4 SV=1	[more]

BLAST of WMU04879 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|255557685\|ref\|XP_002519872.1\|	1.0e-10	88.57	PREDICTED: protein PAM68, chloroplastic [Ricinus communis]	[more]
gi\|470128440\|ref\|XP_004300149.1\|	2.3e-10	100.00	PREDICTED: protein PAM68, chloroplastic [Fragaria vesca subsp. vesca]	[more]
gi\|659095484\|ref\|XP_008448605.1\|	2.3e-10	100.00	PREDICTED: protein PAM68, chloroplastic isoform X2 [Cucumis melo]	[more]
gi\|659095482\|ref\|XP_008448604.1\|	2.3e-10	100.00	PREDICTED: protein PAM68, chloroplastic isoform X1 [Cucumis melo]	[more]
gi\|629113486\|gb\|KCW78446.1\|	5.2e-10	96.67	hypothetical protein EUGRSUZ_D02600 [Eucalyptus grandis]	[more]

Annotated Terms

The following terms have been associated with this transcribed_cluster:

Vocabulary: **INTERPRO**
Term	Definition
IPR021855	PAM68-like

Relationships

This transcribed_cluster is associated with the following gene feature(s):


Feature Name	Unique Name	Type
Cla008859	Cla008859	gene

The following EST feature(s) are a part of this transcribed_cluster:


Feature Name	Unique Name	Type
S1_0005691	S1_0005691	EST
S1_0120634	S1_0120634	EST
S2_0089765	S2_0089765	EST

InterPro

Analysis Name: InterPro Annotations of watermelon unigene v2
Date Performed: 2016-11-16


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR021855	Protein of unknown function DUF3464	PFAM	PF11947	DUF3464	coord: 4..66 score: 1.8
None	No IPR available	PANTHER	PTHR34575	FAMILY NOT NAMED	coord: 3..65 score: 4.9
None	No IPR available	PANTHER	PTHR34575:SF2	SUBFAMILY NOT NAMED	coord: 3..65 score: 4.9