Cla007720 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla007720
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Protein thf1 (AHRD V1 ***- F5UB51_9CYAN); contains Interpro domain(s) IPR017499 Photosystem II biogenesis protein Psp29
Location	Chr2 : 623812 .. 626220 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGGCTGTTAATTCCATTTCAATCTCAACATTAAACCAATGTTCTGATAGAAGATTGCCGGTTCCGTCCCCTCGTTCACTCGCCTCCAATTTCGACGCCTTTCGTTTTCGTACGAGCGTTTTCAGTCATTATTCCCGAGTAAGAGCATCCACCTTCAGTTCTCGCATGGTCATTCATTGCATGTCTGCCGGAACAGGTAGCTTCTCATGATTTGTTTTCCTTACTCACTTATCAGACTATTCCCTTGCCAGAAGAAAACAGCCTCGCTTCTCTGATTTCGATTGAGTTTTCGAATCTCTTTTTGTTTTGATTTTCCTCATTTGTAGAGATGGAATGTTATGGAGGGAATTAGAAGATTTAAGTAACAAATAAGCTTTCAATAGTTCAGTTGAATCAGTTCTATGCTTGTGTAGTGTGTTGAGATTTCTCTAGTTTCGTTTTCTTGCTACTTAGGTCTAGAAACTGATGCGTTATTTTGACGGCTCAGATGTGACCACTGTAGCCGAGACAAAATTGAACTTCCTCAAGGCGTATAAACGGCCTATCCCTAGCATTTACAACACTGTTCTGCAAGAATTGATTGTTCAACAGCATTTGATGAGGTATAAGAGGACATACCGTTATGACCCTGTTTTCGCCCTTGGTTTTGTTACTGTATATGATCAGCTTATGGAAGGGTACCCTAGCGATGAGGATCGTGATGCCATCTTCCAAGCATACATTAAGGCATTGAATGAGGATCCAGAGCAATATAGGTTTGGCCATGTATTCCCCTTTGCTTTTACCATCCCTGATCTCTATCTATTCTTGTCACTTTTCAGCTAAAAACTTCAGTAGGCTTATTTATCGGTAGACACTGTTAAGTTGAAAAATCATAAGCATAATTCACTTTATAGCTGTCTAAACGAATGACCTGGATTGGTATCGAATGTTGGTGCATGTTCAAAAAGTAGTATCGATGGCTTTTATTTGTACCTGGTAATCAAATTTATGAATGTTAATTCTTTGTCCAATAACTCCAAGAATGTAATGTTCTTCACTGGAAATTATTTCCAACCGTCGACAATTTTTCTAATAATTTCGAGAAGGGTTTTTCTTTATTTTAAGTAATATTTTCTGTTATGCCGTCCAGAATTGATGCTAAAAAATTGGAAGAGTGGGCTCGGTCTCAGACTGCCACTTCATTGGTTGAGTTTGCATCAAGAGAAGGAGAAGTTGAGAGTACGTTGAAGGACATTGCAGAACGGGCAGGGAATAAGGGGAATTTCAGTTACAGCCGATTTTTTGCTATTGGACTTTTCCGACTCCTTGAATTGGCAAATGCTACTGAACCCAGTATCTTGGAAAAGGTTTATTTCATATTTCTTTCTGTGATATAGCTTGAAAGTAGATGAAGATTATGGTATGACAATTTTTATCAAGCTATTTATTGCTAAATTAAATGACAACCAGCCCCTCTCATAGGACTTTTATTGATAGATTATATTATTTCTCTGAGTGCTGCCATTTATAAAGTATAATACCGTTTCTGGTTCATTAGTTATCTTTTTACCCGTTAGAGAAATTGAATCTTCATGATATATTGCCTAACCTTATTCTGTTCGAGACTTGAGAGAATTAGGTTCAAAGGCTTCTTTCCTGCATAAGGCTGCATCTTATTTTCTAGCTAACTATTTTTTTTTGGAACATTTGCCCCTCCCCTTCCACCCTTGCCCCTGACCCAACACACACACACAGACTTACAGAGCTTTTGTGCGATTTCCCTTCGCCCTTGTGAAGACTGACTCTATTTACTGTGTCTATCACTGAAGATATAATACTTTTGATCTTTTAAAACAGCTAAAGCTATATAGTCGAACAGTTTCTAAATCAGCTGAAGTCATGGATGGAGATTTGACCCCTCAGTATTGGCATCTAACTTATTGCTACTTCTGAACAGCTCTGTGCTGCTTTAAACATTGACAAAAAAGGTGTAGACCGAGACCTTGATGTATACCGCAACCTGCTTTCAAAGTTGGTTCAAGCGAAGGAGCTCCTAAAGGAATACGTCGATAGGTAAGAGACTGTTAAGTTCATGGTTCTAGGCATGATAAAGTAGGTCTAACTACTCTTCCAAACCATCATTTTTTCACAGATGTTATGCATCTATTTGAAAACTGTCAATCTTGCATGTGTCAAATTGTCTGCAAGTCACTGTCATAGCATTTATATTCATTGGATATCCACCACATGTTCCTCATCCTTGATTGTGATTCTACATTTTAAGGACAAAAGTTTGTATGATTAACCAGTGGTTTTCAATTGTATAGAGAGAAGAAGAAAAGAGATGAGAGGAGTGGATCACAGACAGCTAATGAGGCCATAACTAAATGCTTGGGAGAATACAGCATGCAGACTGGTTTGTAA

mRNA sequence

ATGGCGGCTGTTAATTCCATTTCAATCTCAACATTAAACCAATGTTCTGATAGAAGATTGCCGGTTCCGTCCCCTCGTTCACTCGCCTCCAATTTCGACGCCTTTCGTTTTCGTACGAGCGTTTTCAGTCATTATTCCCGAGTAAGAGCATCCACCTTCAGTTCTCGCATGGTCATTCATTGCATGTCTGCCGGAACAGATGTGACCACTGTAGCCGAGACAAAATTGAACTTCCTCAAGGCGTATAAACGGCCTATCCCTAGCATTTACAACACTGTTCTGCAAGAATTGATTGTTCAACAGCATTTGATGAGGTATAAGAGGACATACCGTTATGACCCTGTTTTCGCCCTTGGTTTTGTTACTGTATATGATCAGCTTATGGAAGGGTACCCTAGCGATGAGGATCGTGATGCCATCTTCCAAGCATACATTAAGGCATTGAATGAGGATCCAGAGCAATATAGAATTGATGCTAAAAAATTGGAAGAGTGGGCTCGGTCTCAGACTGCCACTTCATTGGTTGAGTTTGCATCAAGAGAAGGAGAAGTTGAGAGTACGTTGAAGGACATTGCAGAACGGGCAGGGAATAAGGGGAATTTCAGTTACAGCCGATTTTTTGCTATTGGACTTTTCCGACTCCTTGAATTGGCAAATGCTACTGAACCCAGTATCTTGGAAAAGCTCTGTGCTGCTTTAAACATTGACAAAAAAGGTGTAGACCGAGACCTTGATGTATACCGCAACCTGCTTTCAAAGTTGGTTCAAGCGAAGGAGCTCCTAAAGGAATACGTCGATAGAGAGAAGAAGAAAAGAGATGAGAGGAGTGGATCACAGACAGCTAATGAGGCCATAACTAAATGCTTGGGAGAATACAGCATGCAGACTGGTTTGTAA

Coding sequence (CDS)

ATGGCGGCTGTTAATTCCATTTCAATCTCAACATTAAACCAATGTTCTGATAGAAGATTGCCGGTTCCGTCCCCTCGTTCACTCGCCTCCAATTTCGACGCCTTTCGTTTTCGTACGAGCGTTTTCAGTCATTATTCCCGAGTAAGAGCATCCACCTTCAGTTCTCGCATGGTCATTCATTGCATGTCTGCCGGAACAGATGTGACCACTGTAGCCGAGACAAAATTGAACTTCCTCAAGGCGTATAAACGGCCTATCCCTAGCATTTACAACACTGTTCTGCAAGAATTGATTGTTCAACAGCATTTGATGAGGTATAAGAGGACATACCGTTATGACCCTGTTTTCGCCCTTGGTTTTGTTACTGTATATGATCAGCTTATGGAAGGGTACCCTAGCGATGAGGATCGTGATGCCATCTTCCAAGCATACATTAAGGCATTGAATGAGGATCCAGAGCAATATAGAATTGATGCTAAAAAATTGGAAGAGTGGGCTCGGTCTCAGACTGCCACTTCATTGGTTGAGTTTGCATCAAGAGAAGGAGAAGTTGAGAGTACGTTGAAGGACATTGCAGAACGGGCAGGGAATAAGGGGAATTTCAGTTACAGCCGATTTTTTGCTATTGGACTTTTCCGACTCCTTGAATTGGCAAATGCTACTGAACCCAGTATCTTGGAAAAGCTCTGTGCTGCTTTAAACATTGACAAAAAAGGTGTAGACCGAGACCTTGATGTATACCGCAACCTGCTTTCAAAGTTGGTTCAAGCGAAGGAGCTCCTAAAGGAATACGTCGATAGAGAGAAGAAGAAAAGAGATGAGAGGAGTGGATCACAGACAGCTAATGAGGCCATAACTAAATGCTTGGGAGAATACAGCATGCAGACTGGTTTGTAA

Protein sequence

MAAVNSISISTLNQCSDRRLPVPSPRSLASNFDAFRFRTSVFSHYSRVRASTFSSRMVIHCMSAGTDVTTVAETKLNFLKAYKRPIPSIYNTVLQELIVQQHLMRYKRTYRYDPVFALGFVTVYDQLMEGYPSDEDRDAIFQAYIKALNEDPEQYRIDAKKLEEWARSQTATSLVEFASREGEVESTLKDIAERAGNKGNFSYSRFFAIGLFRLLELANATEPSILEKLCAALNIDKKGVDRDLDVYRNLLSKLVQAKELLKEYVDREKKKRDERSGSQTANEAITKCLGEYSMQTGL

Homology

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BLAST of Cla007720 vs. Swiss-Prot
Match: THF1_SOLTU (Protein THYLAKOID FORMATION1, chloroplastic OS=Solanum tuberosum GN=THF1 PE=2 SV=1)

HSP 1 Score: 401.0 bits (1029), Expect = 1.2e-110
Identity = 202/293 (68.94%), Postives = 241/293 (82.25%), Query Frame = 1


Query: 1   MAAVNSISISTLNQCSDRRLPVPSPRSLASNFDAFRFRTSVFSHYSRVRASTFSSRMVIH 60
           MAAV S+S S + Q ++R+  V S RS+    D FRFR++       VR+S  +SR V+H
Sbjct: 1   MAAVTSVSFSAITQSAERKSSVSSSRSI----DTFRFRSNFSFDSVNVRSSNSTSRFVVH 60

Query: 61  CMSAGT-DVTTVAETKLNFLKAYKRPIPSIYNTVLQELIVQQHLMRYKRTYRYDPVFALG 120
           C S+   D+ TVA+TKL FL AYKRPIP++YNTVLQELIVQQHL RYK++Y+YDPVFALG
Sbjct: 61  CTSSSAADLPTVADTKLKFLTAYKRPIPTVYNTVLQELIVQQHLTRYKKSYQYDPVFALG 120

Query: 121 FVTVYDQLMEGYPSDEDRDAIFQAYIKALNEDPEQYRIDAKKLEEWARSQTATSLVEFAS 180
           FVTVYDQLMEGYPS+EDR+AIF+AYI+AL EDPEQYR DA+KLEEWAR+Q A +LV+F+S
Sbjct: 121 FVTVYDQLMEGYPSEEDRNAIFKAYIEALKEDPEQYRADAQKLEEWARTQNANTLVDFSS 180

Query: 181 REGEVESTLKDIAERAGNKGNFSYSRFFAIGLFRLLELANATEPSILEKLCAALNIDKKG 240
           +EGE+E+  KDIA+RAG K  F YSR FA+GLFRLLELAN T+P+ILEKLCAALN++KK 
Sbjct: 181 KEGEIENIFKDIAQRAGTKDGFCYSRLFAVGLFRLLELANVTDPTILEKLCAALNVNKKS 240

Query: 241 VDRDLDVYRNLLSKLVQAKELLKEYVDREKKKRDERSGSQTANEAITKCLGEY 293
           VDRDLDVYRNLLSKLVQAKELLKEYV+REKKKR ER  +Q ANE +TKCLG+Y
Sbjct: 241 VDRDLDVYRNLLSKLVQAKELLKEYVEREKKKRGERE-TQKANETVTKCLGDY 288

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BLAST of Cla007720 vs. Swiss-Prot
Match: THF1_ARATH (Protein THYLAKOID FORMATION 1, chloroplastic OS=Arabidopsis thaliana GN=THF1 PE=1 SV=1)

HSP 1 Score: 392.5 bits (1007), Expect = 4.1e-108
Identity = 209/290 (72.07%), Postives = 242/290 (83.45%), Query Frame = 1


Query: 3   AVNSISISTLNQCSDRRLPVPSPRSLASNFDAFRFRTSVFSHYSRVRASTFSSRMVIHCM 62
           A++S+S   L Q SD+     S R LAS   A R  T  FS  S    ST  S+ +IHCM
Sbjct: 5   AISSLSFPALGQ-SDKISNFASSRPLAS---AIRICTK-FSRLSLNSRST--SKSLIHCM 64

Query: 63  SAGT-DVTTVAETKLNFLKAYKRPIPSIYNTVLQELIVQQHLMRYKRTYRYDPVFALGFV 122
           S  T DV  V+ETK  FLKAYKRPIPSIYNTVLQELIVQQHLMRYK+TYRYDPVFALGFV
Sbjct: 65  SNVTADVPPVSETKSKFLKAYKRPIPSIYNTVLQELIVQQHLMRYKKTYRYDPVFALGFV 124

Query: 123 TVYDQLMEGYPSDEDRDAIFQAYIKALNEDPEQYRIDAKKLEEWARSQTATSLVEFASRE 182
           TVYDQLMEGYPSD+DRDAIF+AYI+ALNEDP+QYRIDA+K+EEWARSQT+ SLV+F+S+E
Sbjct: 125 TVYDQLMEGYPSDQDRDAIFKAYIEALNEDPKQYRIDAQKMEEWARSQTSASLVDFSSKE 184

Query: 183 GEVESTLKDIAERAGNKGNFSYSRFFAIGLFRLLELANATEPSILEKLCAALNIDKKGVD 242
           G++E+ LKDIA RAG+K  FSYSRFFA+GLFRLLELA+AT+P++L+KLCA+LNI+KK VD
Sbjct: 185 GDIEAVLKDIAGRAGSKEGFSYSRFFAVGLFRLLELASATDPTVLDKLCASLNINKKSVD 244

Query: 243 RDLDVYRNLLSKLVQAKELLKEYVDREKKKRDERSGSQTANEAITKCLGE 292
           RDLDVYRNLLSKLVQAKELLKEYV+REKKK+ ER+ SQ ANE I+KCLG+
Sbjct: 245 RDLDVYRNLLSKLVQAKELLKEYVEREKKKQGERAQSQKANETISKCLGD 287

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BLAST of Cla007720 vs. Swiss-Prot
Match: THF1_ORYSJ (Protein THYLAKOID FORMATION1, chloroplastic OS=Oryza sativa subsp. japonica GN=THF1 PE=2 SV=1)

HSP 1 Score: 372.9 bits (956), Expect = 3.4e-102
Identity = 197/288 (68.40%), Postives = 233/288 (80.90%), Query Frame = 1


Query: 1   MAAVNSISISTLNQCSDRRLPVPSPRSLASNFDAFRFRTSVFSHYSRVRASTFSSRMVIH 60
           MAA++S+  + L + +D R   PS  + A+   A     SV     R R     SR V+ 
Sbjct: 1   MAAISSLPFAALRRAADCR---PSTAAAAAGAGAGAVVLSV-----RPRRG---SRSVVR 60

Query: 61  CMSAGTDVT-TVAETKLNFLKAYKRPIPSIYNTVLQELIVQQHLMRYKRTYRYDPVFALG 120
           C++   DV  TVAETK+NFLK+YKRPI SIY+TVLQEL+VQQHLMRYK TY+YD VFALG
Sbjct: 61  CVATAGDVPPTVAETKMNFLKSYKRPILSIYSTVLQELLVQQHLMRYKTTYQYDAVFALG 120

Query: 121 FVTVYDQLMEGYPSDEDRDAIFQAYIKALNEDPEQYRIDAKKLEEWARSQTATSLVEFAS 180
           FVTVYDQLMEGYPS+EDRDAIF+AYI ALNEDPEQYR DA+K+EEWARSQ   SLVEF+S
Sbjct: 121 FVTVYDQLMEGYPSNEDRDAIFKAYITALNEDPEQYRADAQKMEEWARSQNGNSLVEFSS 180

Query: 181 REGEVESTLKDIAERAGNKGNFSYSRFFAIGLFRLLELANATEPSILEKLCAALNIDKKG 240
           ++GE+E+ LKDI+ERA  KG+FSYSRFFA+GLFRLLELANATEP+IL+KLCAALNI+K+ 
Sbjct: 181 KDGEIEAILKDISERAQGKGSFSYSRFFAVGLFRLLELANATEPTILDKLCAALNINKRS 240

Query: 241 VDRDLDVYRNLLSKLVQAKELLKEYVDREKKKRDERSGSQTANEAITK 288
           VDRDLDVYRN+LSKLVQAKELLKEYV+REKKKR+ERS +  +NEA+TK
Sbjct: 241 VDRDLDVYRNILSKLVQAKELLKEYVEREKKKREERSETPKSNEAVTK 277

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BLAST of Cla007720 vs. Swiss-Prot
Match: THF1_ACAM1 (Protein Thf1 OS=Acaryochloris marina (strain MBIC 11017) GN=thf1 PE=3 SV=1)

HSP 1 Score: 157.1 bits (396), Expect = 2.9e-37
Identity = 83/219 (37.90%), Postives = 134/219 (61.19%), Query Frame = 1


Query: 67  DVTTVAETKLNFLKAYKRPIPSIYNTVLQELIVQQHLMRYKRTYRYDPVFALGFVTVYDQ 126
           ++ TV++TK  F   + RP+ S+Y  V++EL+V+ HL+R    +RYDP+FALG  T +D+
Sbjct: 3   NLRTVSDTKRAFYSIHTRPVNSVYRRVVEELMVEMHLLRVNEDFRYDPIFALGVTTSFDR 62

Query: 127 LMEGYPSDEDRDAIFQAYIKALNEDPEQYRIDAKKLEEWARSQTATSLVEF---ASREG- 186
            M+GY  + D+DAIF A  KA   DP Q + D ++L E A+S++A  ++++   A+  G 
Sbjct: 63  FMDGYQPENDKDAIFSAICKAQEADPVQMKKDGQRLTELAQSKSAQEMLDWITQAANSGG 122

Query: 187 -EVESTLKDIAERAGNKGNFSYSRFFAIGLFRLLELA--NATE-----PSILEKLCAALN 246
            E++  L++IA+       F YSR FAIGLF LLEL+  N T+        L  +C  LN
Sbjct: 123 DELQWQLRNIAQNP----KFKYSRLFAIGLFTLLELSEGNITQDEESLAEFLPNICTVLN 182

Query: 247 IDKKGVDRDLDVYRNLLSKLVQAKELLKEYVDREKKKRD 274
           I +  + +DL++YR  L K+ Q ++ + + ++ +KK+R+
Sbjct: 183 ISESKLQKDLEIYRGNLDKIAQVRQAMDDILEAQKKRRE 217

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BLAST of Cla007720 vs. Swiss-Prot
Match: THF1_TRIEI (Protein Thf1 OS=Trichodesmium erythraeum (strain IMS101) GN=thf1 PE=3 SV=1)

HSP 1 Score: 152.9 bits (385), Expect = 5.5e-36
Identity = 80/216 (37.04%), Postives = 128/216 (59.26%), Query Frame = 1


Query: 70  TVAETKLNFLKAYKRPIPSIYNTVLQELIVQQHLMRYKRTYRYDPVFALGFVTVYDQLME 129
           TV++TK  F   + RPI SIYN V++EL+V+ HL+     Y Y+P +ALG VT +D+ M+
Sbjct: 6   TVSDTKKTFYHFHTRPINSIYNRVIEELLVEMHLISVNVDYSYNPFYALGVVTAFDRFMQ 65

Query: 130 GYPSDEDRDAIFQAYIKALNEDPEQYRIDAKKLEEWARSQTATSLVEFASREGEVEST-- 189
           GY   ED+ +IF A I+   EDP +YR DAK LE+ A   +A+ ++ +      +++T  
Sbjct: 66  GYSPQEDKTSIFNALIQGQEEDPNKYRSDAKGLEDLAGKISASDILSWICLSKNIDNTQY 125

Query: 190 LKDIAERAGNKGNFSYSRFFAIGLFRLLELANA-------TEPSILEKLCAALNIDKKGV 249
           L+D          F YSR FAIGLF LLE+ +             L+K+C +LN+ ++ +
Sbjct: 126 LQDDLRAISENSKFRYSRLFAIGLFTLLEIVDTELIKEQEKRTEALKKICQSLNLVEEKL 185

Query: 250 DRDLDVYRNLLSKLVQAKELLKEYVDREKKKRDERS 277
            +D+D+Y + L ++ QA+  +++ +   +KKR++RS
Sbjct: 186 LKDIDLYLSNLERVAQARSAMEDTLAAMRKKREKRS 221

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BLAST of Cla007720 vs. TrEMBL
Match: A0A0A0K3P0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G046130 PE=3 SV=1)

HSP 1 Score: 553.1 bits (1424), Expect = 2.0e-154
Identity = 282/298 (94.63%), Postives = 288/298 (96.64%), Query Frame = 1


Query: 1   MAAVNSISISTLNQCSDRRLPVPSPRSLASNFDAFRFRTSVFSHYSRVRASTFSSRMVIH 60
           MAAVNSIS STLNQCSDRRL +PS RS +SNF  F FRTSVF+HYSRVRASTFSSRMVIH
Sbjct: 1   MAAVNSISFSTLNQCSDRRLLLPSSRSHSSNFHGFPFRTSVFTHYSRVRASTFSSRMVIH 60

Query: 61  CMSAGTDVTTVAETKLNFLKAYKRPIPSIYNTVLQELIVQQHLMRYKRTYRYDPVFALGF 120
           CMSAGTDVTTVAETKLNFLKAYKRPIPSIYNTVLQELIVQQHLMRYKRTYRYDPVFALGF
Sbjct: 61  CMSAGTDVTTVAETKLNFLKAYKRPIPSIYNTVLQELIVQQHLMRYKRTYRYDPVFALGF 120

Query: 121 VTVYDQLMEGYPSDEDRDAIFQAYIKALNEDPEQYRIDAKKLEEWARSQTATSLVEFASR 180
           VTVYDQLMEGYPSDEDR+AIFQAYIKALNEDPEQYRIDAKK EEWARSQTA SLVEFASR
Sbjct: 121 VTVYDQLMEGYPSDEDREAIFQAYIKALNEDPEQYRIDAKKFEEWARSQTAASLVEFASR 180

Query: 181 EGEVESTLKDIAERAGNKGNFSYSRFFAIGLFRLLELANATEPSILEKLCAALNIDKKGV 240
           EGEVES LKDIAERAG+KGNFSYSRFFAIGLFRLLELANATEPSILEKLCAALNIDKKGV
Sbjct: 181 EGEVESILKDIAERAGSKGNFSYSRFFAIGLFRLLELANATEPSILEKLCAALNIDKKGV 240

Query: 241 DRDLDVYRNLLSKLVQAKELLKEYVDREKKKRDERSGSQTANEAITKCLGEYSMQTGL 299
           DRDLDVYRNLLSKLVQAKELLKEYVDREKKKRDER+GSQTANEAITKCLGEYSMQTGL
Sbjct: 241 DRDLDVYRNLLSKLVQAKELLKEYVDREKKKRDERAGSQTANEAITKCLGEYSMQTGL 298

[Close]

BLAST of Cla007720 vs. TrEMBL
Match: A0A061E4M4_THECC (Photosystem II reaction center PSB29 protein OS=Theobroma cacao GN=TCM_007929 PE=3 SV=1)

HSP 1 Score: 460.3 bits (1183), Expect = 1.8e-126
Identity = 234/292 (80.14%), Postives = 260/292 (89.04%), Query Frame = 1


Query: 1   MAAVNSISISTLNQCS-DRRLPVPSPRSLASNFDAFRFRTSVFSHYSRVRASTFSSRMVI 60
           MAAV+S+S+S + Q S DR++ VPS R LASNF+  RFRTSV  H   VR S  +S  V+
Sbjct: 1   MAAVSSLSLSAIGQTSGDRKVNVPSARYLASNFEGLRFRTSVLYHSVGVRGSASASPSVV 60

Query: 61  HCMSAGTDVTTVAETKLNFLKAYKRPIPSIYNTVLQELIVQQHLMRYKRTYRYDPVFALG 120
           HCM A TDV TV+ETKLNFLKAYKRPIPS+YNTVLQELIVQQHLMRYK TYRYD VFALG
Sbjct: 61  HCMCAATDVPTVSETKLNFLKAYKRPIPSVYNTVLQELIVQQHLMRYKWTYRYDAVFALG 120

Query: 121 FVTVYDQLMEGYPSDEDRDAIFQAYIKALNEDPEQYRIDAKKLEEWARSQTATSLVEFAS 180
           FVTVYDQLMEGYPSDEDRDAIFQAYIKAL EDP+QYRIDA+KLEEWARSQT++SLVEF+S
Sbjct: 121 FVTVYDQLMEGYPSDEDRDAIFQAYIKALKEDPQQYRIDAQKLEEWARSQTSSSLVEFSS 180

Query: 181 REGEVESTLKDIAERAGNKGNFSYSRFFAIGLFRLLELANATEPSILEKLCAALNIDKKG 240
           R+GEVE+ LKDIAERAG  G+FSYSRFFA+GLFRLLELANATEP++LEKLCAALNI+K+ 
Sbjct: 181 RDGEVEAILKDIAERAGRMGSFSYSRFFAVGLFRLLELANATEPTVLEKLCAALNINKRS 240

Query: 241 VDRDLDVYRNLLSKLVQAKELLKEYVDREKKKRDERSGSQTANEAITKCLGE 292
           VDRDLDVYRNLLSKLVQAKELLKEYVDREKKKR+ERS SQ ANEA+ KCLGE
Sbjct: 241 VDRDLDVYRNLLSKLVQAKELLKEYVDREKKKREERSESQKANEAVKKCLGE 292

[Close]

BLAST of Cla007720 vs. TrEMBL
Match: F6HHI1_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_12s0057g00020 PE=3 SV=1)

HSP 1 Score: 454.5 bits (1168), Expect = 9.8e-125
Identity = 230/292 (78.77%), Postives = 257/292 (88.01%), Query Frame = 1


Query: 1   MAAVNSISISTLNQCSDRRLPVPSPRSLASNFDAFRFRTSVFSHYSRVRASTFSSRMVIH 60
           MAAV S+S S L Q S+R++PVP+ RS AS F+AFRFR + ++   R  +S+ SSRMV+ 
Sbjct: 1   MAAVTSLSFSALGQSSERKVPVPTTRSFASAFEAFRFRANFYAVGVRSSSSSSSSRMVVQ 60

Query: 61  CMSAGTDVTTVAETKLNFLKAYKRPIPSIYNTVLQELIVQQHLMRYKRTYRYDPVFALGF 120
           CMS+ TDV TV+ETK+NFLK YKRPIPSIYNT+LQEL+VQQHLMRYKRTYRYD VFALGF
Sbjct: 61  CMSSVTDVPTVSETKMNFLKNYKRPIPSIYNTLLQELMVQQHLMRYKRTYRYDAVFALGF 120

Query: 121 VTVYDQLMEGYPSDEDRDAIFQAYIKALNEDPEQYRIDAKKLEEWARSQTATSLVEFASR 180
           VTVYDQLM+GYPSDEDRD IFQ YIKAL EDPEQYR DA+ LEEWARSQTA+SLVEF+S+
Sbjct: 121 VTVYDQLMDGYPSDEDRDIIFQVYIKALREDPEQYRKDAQMLEEWARSQTASSLVEFSSK 180

Query: 181 EGEVESTLKDIAERAGNKGNFSYSRFFAIGLFRLLELANATEPSILEKLCAALNIDKKGV 240
           EGEVE  LKDIAERAG KG+FSYSRFFAIGLFRLLELANATEP+ILEKLCAA NI K+ V
Sbjct: 181 EGEVEGILKDIAERAGGKGSFSYSRFFAIGLFRLLELANATEPTILEKLCAAFNISKRSV 240

Query: 241 DRDLDVYRNLLSKLVQAKELLKEYVDREKKKRDERSGSQTANEAITKCLGEY 293
           DRDLDVYRNLL+KLVQAKELLKEYVDREKKKR+ER  SQ ANEAITKCLGEY
Sbjct: 241 DRDLDVYRNLLTKLVQAKELLKEYVDREKKKREERVESQKANEAITKCLGEY 292

[Close]

BLAST of Cla007720 vs. TrEMBL
Match: A0A0B0MJ75_GOSAR (Thylakoid formation 1, chloroplastic-like protein OS=Gossypium arboreum GN=F383_18808 PE=3 SV=1)

HSP 1 Score: 453.0 bits (1164), Expect = 2.8e-124
Identity = 229/293 (78.16%), Postives = 259/293 (88.40%), Query Frame = 1


Query: 1   MAAVNSISISTLNQCS-DRRLPVPSPRSLASNFDAFRFRTSVFSHYSRVRASTFSSRMVI 60
           MAAV+S+S   + Q S DR+L VPSPR LASNF+ FRFRTS+      +RAST +S  V+
Sbjct: 1   MAAVSSLSFPAIGQTSGDRKLNVPSPRYLASNFEGFRFRTSLLYQSVGLRASTTASPSVV 60

Query: 61  HCMSAGTDVTTVAETKLNFLKAYKRPIPSIYNTVLQELIVQQHLMRYKRTYRYDPVFALG 120
           +CMS  TD  TV+ETK +FLKAYKRPIPS+YNTVLQELIVQQHLMRYK+TYRYD VFALG
Sbjct: 61  YCMSTATDTPTVSETKSSFLKAYKRPIPSVYNTVLQELIVQQHLMRYKKTYRYDAVFALG 120

Query: 121 FVTVYDQLMEGYPSDEDRDAIFQAYIKALNEDPEQYRIDAKKLEEWARSQTATSLVEFAS 180
           FVTVYDQLMEGYPSDEDRDAIFQAYI AL EDP+QYR DA+KLEEWAR+QT++SLV+F+S
Sbjct: 121 FVTVYDQLMEGYPSDEDRDAIFQAYINALKEDPQQYRADAQKLEEWARAQTSSSLVKFSS 180

Query: 181 REGEVESTLKDIAERAGNKGNFSYSRFFAIGLFRLLELANATEPSILEKLCAALNIDKKG 240
           R+GEVE+ LKDIAERAG+KG+FSYSRFFAIGLFRLLELANATEP++LEKLCAALNIDK+ 
Sbjct: 181 RDGEVEAILKDIAERAGSKGSFSYSRFFAIGLFRLLELANATEPTVLEKLCAALNIDKRS 240

Query: 241 VDRDLDVYRNLLSKLVQAKELLKEYVDREKKKRDERSGSQTANEAITKCLGEY 293
           VDRDLDVYRNLLSKLVQAKELLKEYVDREKKKR+ERS S  ANEA+ KC GEY
Sbjct: 241 VDRDLDVYRNLLSKLVQAKELLKEYVDREKKKREERSESPKANEAVKKCSGEY 293

[Close]

BLAST of Cla007720 vs. TrEMBL
Match: A0A0D2V4U5_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_012G132100 PE=3 SV=1)

HSP 1 Score: 452.6 bits (1163), Expect = 3.7e-124
Identity = 230/293 (78.50%), Postives = 258/293 (88.05%), Query Frame = 1


Query: 1   MAAVNSISISTLNQCS-DRRLPVPSPRSLASNFDAFRFRTSVFSHYSRVRASTFSSRMVI 60
           MAAV+S+S   + Q S DR+L VPS R LASNF+ FRFRTS+      +RAST +S  V 
Sbjct: 1   MAAVSSLSFPAIGQTSGDRKLNVPSARYLASNFEGFRFRTSLLYQSVGLRASTTASPSVF 60

Query: 61  HCMSAGTDVTTVAETKLNFLKAYKRPIPSIYNTVLQELIVQQHLMRYKRTYRYDPVFALG 120
           +CMS  TD  TV+ETK +FLKAYKRPIPS+YNTVLQELIVQQHLMRYK+TYRYD VFALG
Sbjct: 61  YCMSTATDTPTVSETKSSFLKAYKRPIPSVYNTVLQELIVQQHLMRYKKTYRYDAVFALG 120

Query: 121 FVTVYDQLMEGYPSDEDRDAIFQAYIKALNEDPEQYRIDAKKLEEWARSQTATSLVEFAS 180
           FVTVYDQLMEGYPSDEDRDAIFQAYI AL EDP+QYR DA+KLEEWAR+QT++SLVEF+S
Sbjct: 121 FVTVYDQLMEGYPSDEDRDAIFQAYINALKEDPQQYRADAQKLEEWARAQTSSSLVEFSS 180

Query: 181 REGEVESTLKDIAERAGNKGNFSYSRFFAIGLFRLLELANATEPSILEKLCAALNIDKKG 240
           R+GEVE+ LKDIAERAG+KG+FSYSRFFAIGLFRLLELANATEP++LEKLCAALNIDK+ 
Sbjct: 181 RDGEVEAILKDIAERAGSKGSFSYSRFFAIGLFRLLELANATEPTVLEKLCAALNIDKRS 240

Query: 241 VDRDLDVYRNLLSKLVQAKELLKEYVDREKKKRDERSGSQTANEAITKCLGEY 293
           VDRDLDVYRNLLSKLVQAKELLKEYVDREKKKR+ERS S  ANEA+ KCLGEY
Sbjct: 241 VDRDLDVYRNLLSKLVQAKELLKEYVDREKKKREERSESPKANEAVKKCLGEY 293

[Close]

BLAST of Cla007720 vs. NCBI nr
Match: gi|659110691|ref|XP_008455361.1| (PREDICTED: protein THYLAKOID FORMATION1, chloroplastic [Cucumis melo])

HSP 1 Score: 561.2 bits (1445), Expect = 1.1e-156
Identity = 283/298 (94.97%), Postives = 291/298 (97.65%), Query Frame = 1


Query: 1   MAAVNSISISTLNQCSDRRLPVPSPRSLASNFDAFRFRTSVFSHYSRVRASTFSSRMVIH 60
           MAAVNSIS STLNQCSDRR PVPS RSL+SNFD FRFRTS+F+HYSRVR STFSSRMVIH
Sbjct: 1   MAAVNSISFSTLNQCSDRRFPVPSSRSLSSNFDGFRFRTSLFTHYSRVRPSTFSSRMVIH 60

Query: 61  CMSAGTDVTTVAETKLNFLKAYKRPIPSIYNTVLQELIVQQHLMRYKRTYRYDPVFALGF 120
           CMSAGTDVTTVAETKLNFLKAYKRPIPSIYNTVLQELIVQQHLMRYKRTYRYDPVFALGF
Sbjct: 61  CMSAGTDVTTVAETKLNFLKAYKRPIPSIYNTVLQELIVQQHLMRYKRTYRYDPVFALGF 120

Query: 121 VTVYDQLMEGYPSDEDRDAIFQAYIKALNEDPEQYRIDAKKLEEWARSQTATSLVEFASR 180
           VTVYDQLMEGYPSDEDR+AIFQAYIKALNEDPEQYRIDA+KLEEWARSQTA SLVEFASR
Sbjct: 121 VTVYDQLMEGYPSDEDREAIFQAYIKALNEDPEQYRIDAQKLEEWARSQTAASLVEFASR 180

Query: 181 EGEVESTLKDIAERAGNKGNFSYSRFFAIGLFRLLELANATEPSILEKLCAALNIDKKGV 240
           EGEVES LKDIAERAG+KGNFSYSRFFAIGLFRLLELANATEPSILEKLCAALNIDKKGV
Sbjct: 181 EGEVESILKDIAERAGSKGNFSYSRFFAIGLFRLLELANATEPSILEKLCAALNIDKKGV 240

Query: 241 DRDLDVYRNLLSKLVQAKELLKEYVDREKKKRDERSGSQTANEAITKCLGEYSMQTGL 299
           DRDLDVYRNLLSKLVQAKELLKEY+DREKKKRDER+GSQTANEAITKCLGEYSMQTGL
Sbjct: 241 DRDLDVYRNLLSKLVQAKELLKEYIDREKKKRDERAGSQTANEAITKCLGEYSMQTGL 298

[Close]

BLAST of Cla007720 vs. NCBI nr
Match: gi|449438054|ref|XP_004136805.1| (PREDICTED: protein THYLAKOID FORMATION1, chloroplastic [Cucumis sativus])

HSP 1 Score: 553.1 bits (1424), Expect = 2.9e-154
Identity = 282/298 (94.63%), Postives = 288/298 (96.64%), Query Frame = 1


Query: 1   MAAVNSISISTLNQCSDRRLPVPSPRSLASNFDAFRFRTSVFSHYSRVRASTFSSRMVIH 60
           MAAVNSIS STLNQCSDRRL +PS RS +SNF  F FRTSVF+HYSRVRASTFSSRMVIH
Sbjct: 1   MAAVNSISFSTLNQCSDRRLLLPSSRSHSSNFHGFPFRTSVFTHYSRVRASTFSSRMVIH 60

Query: 61  CMSAGTDVTTVAETKLNFLKAYKRPIPSIYNTVLQELIVQQHLMRYKRTYRYDPVFALGF 120
           CMSAGTDVTTVAETKLNFLKAYKRPIPSIYNTVLQELIVQQHLMRYKRTYRYDPVFALGF
Sbjct: 61  CMSAGTDVTTVAETKLNFLKAYKRPIPSIYNTVLQELIVQQHLMRYKRTYRYDPVFALGF 120

Query: 121 VTVYDQLMEGYPSDEDRDAIFQAYIKALNEDPEQYRIDAKKLEEWARSQTATSLVEFASR 180
           VTVYDQLMEGYPSDEDR+AIFQAYIKALNEDPEQYRIDAKK EEWARSQTA SLVEFASR
Sbjct: 121 VTVYDQLMEGYPSDEDREAIFQAYIKALNEDPEQYRIDAKKFEEWARSQTAASLVEFASR 180

Query: 181 EGEVESTLKDIAERAGNKGNFSYSRFFAIGLFRLLELANATEPSILEKLCAALNIDKKGV 240
           EGEVES LKDIAERAG+KGNFSYSRFFAIGLFRLLELANATEPSILEKLCAALNIDKKGV
Sbjct: 181 EGEVESILKDIAERAGSKGNFSYSRFFAIGLFRLLELANATEPSILEKLCAALNIDKKGV 240

Query: 241 DRDLDVYRNLLSKLVQAKELLKEYVDREKKKRDERSGSQTANEAITKCLGEYSMQTGL 299
           DRDLDVYRNLLSKLVQAKELLKEYVDREKKKRDER+GSQTANEAITKCLGEYSMQTGL
Sbjct: 241 DRDLDVYRNLLSKLVQAKELLKEYVDREKKKRDERAGSQTANEAITKCLGEYSMQTGL 298

[Close]

BLAST of Cla007720 vs. NCBI nr
Match: gi|694324363|ref|XP_009353207.1| (PREDICTED: protein THYLAKOID FORMATION1, chloroplastic-like [Pyrus x bretschneideri])

HSP 1 Score: 460.3 bits (1183), Expect = 2.6e-126
Identity = 227/295 (76.95%), Postives = 262/295 (88.81%), Query Frame = 1


Query: 1   MAAVNSISISTLNQCSDRRLPVPSPRSLASNFDAFRFRTSVFSHYSRVRASTFSSRMVIH 60
           MAAV S+S S L+QCSDR+  V   R+L SN +  RFRTS+ SHY  +RAS++SSRMV+H
Sbjct: 1   MAAVASLSFSALSQCSDRKSVVSPARNLGSNAEGIRFRTSISSHYGGIRASSWSSRMVVH 60

Query: 61  CMSAGTDVTTVAETKLNFLKAYKRPIPSIYNTVLQELIVQQHLMRYKRTYRYDPVFALGF 120
           CM+  +D  TVA+TKLNFLKAYKRPIPS+YN+VLQELIVQQHLM+YKRTYRYDPVFALGF
Sbjct: 61  CMAGSSDSPTVADTKLNFLKAYKRPIPSVYNSVLQELIVQQHLMKYKRTYRYDPVFALGF 120

Query: 121 VTVYDQLMEGYPSDEDRDAIFQAYIKALNEDPEQYRIDAKKLEEWARSQTATSLVEFASR 180
           VTVYDQLM+GYPSDEDR+AIFQAYIKALNEDPEQYR DA+KLEEWAR+QT++SLVEF SR
Sbjct: 121 VTVYDQLMDGYPSDEDREAIFQAYIKALNEDPEQYRTDAQKLEEWARAQTSSSLVEFPSR 180

Query: 181 EGEVESTLKDIAERAGNKGNFSYSRFFAIGLFRLLELANATEPSILEKLCAALNIDKKGV 240
           EGEVE+ LKDIAERA  K +FSYSRFFAIGLFRLLE+A ATEP++LEKLCAALNIDK+ V
Sbjct: 181 EGEVEAALKDIAERAAGKESFSYSRFFAIGLFRLLEVAKATEPTVLEKLCAALNIDKRSV 240

Query: 241 DRDLDVYRNLLSKLVQAKELLKEYVDREKKKRDERSGSQTANEAITKCLGEYSMQ 296
           DRDLDVYRNLLSKLVQAKELL+EYV REKKKR+ER+ +Q A+E +TKCLG+Y  Q
Sbjct: 241 DRDLDVYRNLLSKLVQAKELLREYVAREKKKREERAETQKASETVTKCLGDYVCQ 295

[Close]

BLAST of Cla007720 vs. NCBI nr
Match: gi|590690275|ref|XP_007043465.1| (Photosystem II reaction center PSB29 protein [Theobroma cacao])

HSP 1 Score: 460.3 bits (1183), Expect = 2.6e-126
Identity = 234/292 (80.14%), Postives = 260/292 (89.04%), Query Frame = 1


Query: 1   MAAVNSISISTLNQCS-DRRLPVPSPRSLASNFDAFRFRTSVFSHYSRVRASTFSSRMVI 60
           MAAV+S+S+S + Q S DR++ VPS R LASNF+  RFRTSV  H   VR S  +S  V+
Sbjct: 1   MAAVSSLSLSAIGQTSGDRKVNVPSARYLASNFEGLRFRTSVLYHSVGVRGSASASPSVV 60

Query: 61  HCMSAGTDVTTVAETKLNFLKAYKRPIPSIYNTVLQELIVQQHLMRYKRTYRYDPVFALG 120
           HCM A TDV TV+ETKLNFLKAYKRPIPS+YNTVLQELIVQQHLMRYK TYRYD VFALG
Sbjct: 61  HCMCAATDVPTVSETKLNFLKAYKRPIPSVYNTVLQELIVQQHLMRYKWTYRYDAVFALG 120

Query: 121 FVTVYDQLMEGYPSDEDRDAIFQAYIKALNEDPEQYRIDAKKLEEWARSQTATSLVEFAS 180
           FVTVYDQLMEGYPSDEDRDAIFQAYIKAL EDP+QYRIDA+KLEEWARSQT++SLVEF+S
Sbjct: 121 FVTVYDQLMEGYPSDEDRDAIFQAYIKALKEDPQQYRIDAQKLEEWARSQTSSSLVEFSS 180

Query: 181 REGEVESTLKDIAERAGNKGNFSYSRFFAIGLFRLLELANATEPSILEKLCAALNIDKKG 240
           R+GEVE+ LKDIAERAG  G+FSYSRFFA+GLFRLLELANATEP++LEKLCAALNI+K+ 
Sbjct: 181 RDGEVEAILKDIAERAGRMGSFSYSRFFAVGLFRLLELANATEPTVLEKLCAALNINKRS 240

Query: 241 VDRDLDVYRNLLSKLVQAKELLKEYVDREKKKRDERSGSQTANEAITKCLGE 292
           VDRDLDVYRNLLSKLVQAKELLKEYVDREKKKR+ERS SQ ANEA+ KCLGE
Sbjct: 241 VDRDLDVYRNLLSKLVQAKELLKEYVDREKKKREERSESQKANEAVKKCLGE 292

[Close]

BLAST of Cla007720 vs. NCBI nr
Match: gi|658025445|ref|XP_008348123.1| (PREDICTED: protein THYLAKOID FORMATION1, chloroplastic-like [Malus domestica])

HSP 1 Score: 459.5 bits (1181), Expect = 4.4e-126
Identity = 228/295 (77.29%), Postives = 260/295 (88.14%), Query Frame = 1


Query: 1   MAAVNSISISTLNQCSDRRLPVPSPRSLASNFDAFRFRTSVFSHYSRVRASTFSSRMVIH 60
           MAAV S+S S L+QCSDR+  V S R+L SN +  RFRTS+ SHY  +RAS+ SSRMV+H
Sbjct: 1   MAAVASLSFSALSQCSDRKSVVSSARNLGSNAEGIRFRTSISSHYGGIRASSSSSRMVVH 60

Query: 61  CMSAGTDVTTVAETKLNFLKAYKRPIPSIYNTVLQELIVQQHLMRYKRTYRYDPVFALGF 120
           CM+  +D  TVA+TKLNFLKAYKRPIPS+YN+VLQELIVQQHLM+YKRTYRYDPVFALGF
Sbjct: 61  CMAGSSDAPTVADTKLNFLKAYKRPIPSVYNSVLQELIVQQHLMKYKRTYRYDPVFALGF 120

Query: 121 VTVYDQLMEGYPSDEDRDAIFQAYIKALNEDPEQYRIDAKKLEEWARSQTATSLVEFASR 180
           VTVYDQLM+GYPSDEDR+AIFQAYIKALNEDPEQYR DA+KLEEWAR+QT++SLVEF SR
Sbjct: 121 VTVYDQLMDGYPSDEDREAIFQAYIKALNEDPEQYRTDAQKLEEWARAQTSSSLVEFPSR 180

Query: 181 EGEVESTLKDIAERAGNKGNFSYSRFFAIGLFRLLELANATEPSILEKLCAALNIDKKGV 240
           EGEVE  LKDIAERA  K +FSYSRFFAIGLFRLLE+A ATEP++LEKLCAALNIDK+ V
Sbjct: 181 EGEVEVALKDIAERAAGKESFSYSRFFAIGLFRLLEVAKATEPTVLEKLCAALNIDKRSV 240

Query: 241 DRDLDVYRNLLSKLVQAKELLKEYVDREKKKRDERSGSQTANEAITKCLGEYSMQ 296
           DRDLDVYRNLLSKLVQAKELL+EYV REKKKR+ER  +Q A+E +TKCLG+Y  Q
Sbjct: 241 DRDLDVYRNLLSKLVQAKELLREYVAREKKKREERVETQKASETVTKCLGDYVCQ 295

The following BLAST results are available for this feature:

BLAST of Cla007720 vs. Swiss-Prot


Match Name	E-value	Identity	Description
THF1_SOLTU	1.2e-110	68.94	Protein THYLAKOID FORMATION1, chloroplastic OS=Solanum tuberosum GN=THF1 PE=2 SV...	[more]
THF1_ARATH	4.1e-108	72.07	Protein THYLAKOID FORMATION 1, chloroplastic OS=Arabidopsis thaliana GN=THF1 PE=...	[more]
THF1_ORYSJ	3.4e-102	68.40	Protein THYLAKOID FORMATION1, chloroplastic OS=Oryza sativa subsp. japonica GN=T...	[more]
THF1_ACAM1	2.9e-37	37.90	Protein Thf1 OS=Acaryochloris marina (strain MBIC 11017) GN=thf1 PE=3 SV=1	[more]
THF1_TRIEI	5.5e-36	37.04	Protein Thf1 OS=Trichodesmium erythraeum (strain IMS101) GN=thf1 PE=3 SV=1	[more]

BLAST of Cla007720 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K3P0_CUCSA	2.0e-154	94.63	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G046130 PE=3 SV=1	[more]
A0A061E4M4_THECC	1.8e-126	80.14	Photosystem II reaction center PSB29 protein OS=Theobroma cacao GN=TCM_007929 PE...	[more]
F6HHI1_VITVI	9.8e-125	78.77	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_12s0057g00020 PE=3 SV=...	[more]
A0A0B0MJ75_GOSAR	2.8e-124	78.16	Thylakoid formation 1, chloroplastic-like protein OS=Gossypium arboreum GN=F383_...	[more]
A0A0D2V4U5_GOSRA	3.7e-124	78.50	Uncharacterized protein OS=Gossypium raimondii GN=B456_012G132100 PE=3 SV=1	[more]

BLAST of Cla007720 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659110691\|ref\|XP_008455361.1\|	1.1e-156	94.97	PREDICTED: protein THYLAKOID FORMATION1, chloroplastic [Cucumis melo]	[more]
gi\|449438054\|ref\|XP_004136805.1\|	2.9e-154	94.63	PREDICTED: protein THYLAKOID FORMATION1, chloroplastic [Cucumis sativus]	[more]
gi\|694324363\|ref\|XP_009353207.1\|	2.6e-126	76.95	PREDICTED: protein THYLAKOID FORMATION1, chloroplastic-like [Pyrus x bretschneid...	[more]
gi\|590690275\|ref\|XP_007043465.1\|	2.6e-126	80.14	Photosystem II reaction center PSB29 protein [Theobroma cacao]	[more]
gi\|658025445\|ref\|XP_008348123.1\|	4.4e-126	77.29	PREDICTED: protein THYLAKOID FORMATION1, chloroplastic-like [Malus domestica]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR017499	Thf1

Vocabulary: **Biological Process**
Term	Definition
GO:0010207	photosystem II assembly
GO:0015979	photosynthesis

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015996	chlorophyll catabolic process
biological_process	GO:0045038	protein import into chloroplast thylakoid membrane
biological_process	GO:0015979	photosynthesis
biological_process	GO:0042793	transcription from plastid promoter
biological_process	GO:0010027	thylakoid membrane organization
biological_process	GO:0010182	sugar mediated signaling pathway
biological_process	GO:0009902	chloroplast relocation
biological_process	GO:0006417	regulation of translation
biological_process	GO:0035304	regulation of protein dephosphorylation
biological_process	GO:0006364	rRNA processing
biological_process	GO:0045037	protein import into chloroplast stroma
biological_process	GO:0010207	photosystem II assembly
biological_process	GO:0009773	photosynthetic electron transport in photosystem I
biological_process	GO:0006655	phosphatidylglycerol biosynthetic process
biological_process	GO:0019288	isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway
biological_process	GO:0007186	G-protein coupled receptor signaling pathway
biological_process	GO:0045893	positive regulation of transcription, DNA-templated
biological_process	GO:0042742	defense response to bacterium
cellular_component	GO:0010319	stromule
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0009570	chloroplast stroma
cellular_component	GO:0009527	plastid outer membrane
cellular_component	GO:0009528	plastid inner membrane
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0009941	chloroplast envelope
cellular_component	GO:0009534	chloroplast thylakoid
molecular_function	GO:0003674	molecular_function

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
WMU04737	watermelon unigene v2 vs TrEMBL	transcribed_cluster
WMU16940	watermelon unigene v2 vs TrEMBL	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla007720	Cla007720.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
WMU04737	WMU04737	transcribed_cluster
WMU16940	WMU16940	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR017499	Protein Thf1	HAMAP	MF_01843	Thf1	coord: 65..273 score: 22
IPR017499	Protein Thf1	PFAM	PF11264	ThylakoidFormat	coord: 70..275 score: 2.1
IPR017499	Protein Thf1	TIGRFAMs	TIGR03060	TIGR03060	coord: 67..272 score: 1.7
None	No IPR available	unknown	Coil	Coil	coord: 247..274 scor
None	No IPR available	PANTHER	PTHR34793	FAMILY NOT NAMED	coord: 2..297 score: 3.3E
None	No IPR available	PANTHER	PTHR34793:SF1	PROTEIN THYLAKOID FORMATION 1, CHLOROPLASTIC	coord: 2..297 score: 3.3E

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla007720	Cla97C02G027820	Watermelon (97103) v2	wmwmbB324
Cla007720	Csa7G046130	Cucumber (Chinese Long) v2	cuwmB596
Cla007720	MELO3C018772	Melon (DHL92) v3.5.1	mewmB245
Cla007720	ClCG02G001360	Watermelon (Charleston Gray)	wcgwmB206
Cla007720	CSPI07G04230	Wild cucumber (PI 183967)	cpiwmB614
Cla007720	Cucsa.148030	Cucumber (Gy14) v1	cgywmB262
Cla007720	CmaCh19G009590	Cucurbita maxima (Rimu)	cmawmB499
Cla007720	CmaCh11G018540	Cucurbita maxima (Rimu)	cmawmB122
Cla007720	CmoCh19G009890	Cucurbita moschata (Rifu)	cmowmB492
Cla007720	CmoCh11G019300	Cucurbita moschata (Rifu)	cmowmB110
Cla007720	Lsi11G015090	Bottle gourd (USVL1VR-Ls)	lsiwmB100
Cla007720	Cp4.1LG04g03250	Cucurbita pepo (Zucchini)	cpewmB666
Cla007720	Cp4.1LG15g07800	Cucurbita pepo (Zucchini)	cpewmB264
Cla007720	CsGy7G003860	Cucumber (Gy14) v2	cgybwmB558
Cla007720	MELO3C018772.2	Melon (DHL92) v3.6.1	medwmB237
Cla007720	Carg19098	Silver-seed gourd	carwmB0718
Cla007720	Bhi05G001568	Wax gourd	wgowmB274

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla007720	Melon (DHL92) v3.6.1	medwmB173
Cla007720	Melon (DHL92) v3.6.1	medwmB582
Cla007720	Silver-seed gourd	carwmB0032
Cla007720	Silver-seed gourd	carwmB0329
Cla007720	Silver-seed gourd	carwmB0643
Cla007720	Silver-seed gourd	carwmB0880
Cla007720	Cucumber (Chinese Long) v3	cucwmB076
Cla007720	Cucumber (Chinese Long) v3	cucwmB544
Cla007720	Cucumber (Chinese Long) v3	cucwmB626
Cla007720	Watermelon (97103) v2	wmwmbB307
Cla007720	Watermelon (97103) v2	wmwmbB336
Cla007720	Wax gourd	wgowmB404
Cla007720	Wax gourd	wgowmB460
Cla007720	Watermelon (97103) v1	wmwmB087
Cla007720	Watermelon (97103) v1	wmwmB144
Cla007720	Cucumber (Gy14) v1	cgywmB027
Cla007720	Cucurbita maxima (Rimu)	cmawmB212
Cla007720	Cucurbita maxima (Rimu)	cmawmB598
Cla007720	Cucurbita maxima (Rimu)	cmawmB646
Cla007720	Cucurbita moschata (Rifu)	cmowmB198
Cla007720	Cucurbita moschata (Rifu)	cmowmB526
Cla007720	Cucurbita moschata (Rifu)	cmowmB590
Cla007720	Cucurbita moschata (Rifu)	cmowmB640
Cla007720	Melon (DHL92) v3.5.1	mewmB177
Cla007720	Melon (DHL92) v3.5.1	mewmB597
Cla007720	Watermelon (Charleston Gray)	wcgwmB163
Cla007720	Watermelon (Charleston Gray)	wcgwmB241
Cla007720	Cucumber (Chinese Long) v2	cuwmB067
Cla007720	Cucurbita pepo (Zucchini)	cpewmB730
Cla007720	Bottle gourd (USVL1VR-Ls)	lsiwmB075
Cla007720	Bottle gourd (USVL1VR-Ls)	lsiwmB163
Cla007720	Bottle gourd (USVL1VR-Ls)	lsiwmB215