Cp4.1LG04g03250 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG04g03250
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionProtein thf1
LocationCp4.1LG04 : 7319621 .. 7324748 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CATGGCCTCTCAGTTTCGTCCTCTCTTGTTTCTTTCTTTTCTTTTCTTTTTTTTTTTTTTTTTTCCTCAATGAAAGCTTGGTTATTCATTAAAAGAAATGATATGCCAAACTTCCTNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCTCCCAGAAAAAATCTTCGACATGAAATCCTTTTTCTCTGGAAGTTTGTAAGATTTGCAAATTTCTTCTCATTCTTCTGCAATGGCGGCTGTTAATTCCGTGTCATTCTCAACGGTAAGTCAGTTTTCTGATCGAAGGTCGCCGGTTCCGTCGGCTCGTTCACTCGCCTCGAATTTCGACGGGTTTCGTTTCCGTTCTAGTGTTTTCTATCATCATTCGGGAGTTCGAACCTCGAGTTTCAGTTCTCGCTTGGTCATTCATTGCATGTCCGCCGGAACAGGTAGCTTCTGGCAGATTTGTTTTCCTTACTCGCTTACTAGACTGTTCCTTTGCTAGATTATGGTAGCAGAAACGAATTGGCTTGTTTCGATGATTTCGATGTGAACTTGTGTTTTTTTGTTCGTTAATTGTTGAGATGAATCGTTATGGACGGAAATTTATGTTTTAAGTAACAATTAGGCTTTCAATAGTTCGGTTTGATCAATTCTAAACTTGTTCAGTATGTTGAGATTTCTCTAGTTCGATTTCTTAGTATTTGAGTGTAGAAAATGATGTGCTATTTTCGGATTTAGATGTGACGACTGTAGCTGAGACTAAATTGAACTTTCTAAAGGCGTATAAACGACCTATCCCTAGCATATACAACTCTGTTCTGCAAGAGTTGATTGTGCAGCAGCATTTGATGAGGTATAAGAGGACGTACCGTTATGATCCTGTTTTCGCCCTCGGTTTTGTTACTGTATATGATCAGCTTATGGATGGGTACCCTAGCGATGAGGATCGGGAGGCCATTTTCCAAGCCTACATTAAGGCGTTGAATGAGGATCCAGAGCAATATAGGTTTGGCCATGTATTCCCCTTTGCTTTACCATCCCTGATCTCTATCTCTTCTTGCCATCTAATAAATTCACTAGCCTTGTTCATAGATAGTAAACATTGTTAAGTTGAAAAAAACATGACATGATTCCACTTACAGCAAAAATACGACGATTCTTATTCAACTTTTATCTTCTTTCCTAGTATTTCACATCTTAATTTGGACTTGGTTGTCTAAATGACTAGATTATTTGGTCAAATCACATGGTAATCTAATTAACGGATGTTTACTCTTTGTTCAATATCTCCAAGAGTGGAATTTTCTTCACTGGAAATTATATTCCATCCTTCGACCATTCTTCCAATAATTTCAAGAAGGTTTTTCTTCATTTTTAGTACTACTTTCTGTTATACCGTCCAGAATTGATGCTCAAAAATTGGAAGAGTGGGCTCGGTCTCAGTCTGCAGCTTCATTGGTTGAATTTGCATCAAAAGAAGGAGAAGTTGAGAGTGTTTTGAAAGACATTGCAGAACGAGCTGCGAGTAAGGGGAGTTTCAGTTACAGCCGATTTTTTGCGATTGGGCTATTTCGACTCCTCGAATTGGCAAATGCTACTGAACCCAGTATCTTGGAAAAGGTTTATTTTATCTTCCTCTTTGTGATATAGCTTTTAAGTAGATGAAGATTTTGAGATGATAGTATATCGAGCTTATTATTGCTAAATTAAACATTTACATGATAGCCAGCCCCCCTCTCATAGTACTTTTACTTGTAGATTGTATTCTTTCTCTGAGTGCTGCCATTCATAAAGTGTAATTGTGTTTCGTGCTCATTATTATCTTTTTACTCATTAGAGAAATTGGATCCTGATGGAAGAGTGCTTAACCTTATTCAGTTCGATAGAATTAGGTTCAAGGTACTCTTTCCTGCATTAGTCTCCATTTTACTTTTCTAGGTAACATCAATCTTTTTTGTAGTATTTGGTTGAAGAGAAATATGAGCTAACCATTTTTTGGAACATTCCCCTTTGCTCGGGACAATCCCACATACACAATTACAGTGTTTTTGTGGGATTTCCTTCTCCTTTGTGGAGATTGTACTGATCTTGTGGATGTAGTTTATGCTCTTTAGTAGTCTCAGCTGGTCCTTTTCATTCAGTTTATTAGCTCTTGTGAAGGGAAACATACATATGTTCCACTGCCCCCATCAACAACAGTTATCATGAACTATTGCTTTAATTGGCCATCTCTATTTAGCGTGTCTATCTCCAAACATACTTTTATTTTTCTAAAACAGCTAAAGCCATGTAATGGAGATTTTACCAAGTGTTGACATCTAACACTTTGCTGCTTCTGAACAGCTCTGTGCCGCTTTAAATGTTGACAAAAAAAGTGTGGACCGAGACCTTGATGTATACCGCAACCTGCTTTCGAAGTTGGTTCAGGCGAAGGAGCTCCTAAAGGAATACGTTGATAGGTAAGAGATTTTTAAGTTCATGGTTCCTGGCCTGGTAGATTAGCATACCCACAATCTGCTCTTTCACACCACCATATTTTCTTGGATTTTATGAACCCATAATCGTTTTGAAAACAATCCAGTATTTGTCAAATCTTCTGCAACTCACCGTCATATCATTTATATTCACTAGATATCCACCGCTTGGCTGTGTTTTAAGATGAAAGTGATGTTTTATGTAAGTTTAAATGAAGTATTTTTGCATTCAATACAGTGGTGACCTTAGATTAAGTGGAAAATTTCGGGTCATTACATGGATCTTGAGTGAGGGTGGCTGTGTTTTAAGATGAAGGTGATGTTTTATGAAAGTTTAAATGAAGTATTTCTGCATTTAATGTTCATGATATGTATACAGTAGCGGCCTTAAATTTAGTAGAAAATTTCGGATCGTTACATGAATCTTGAGTGAGGCTGACTGTGTTCTAAAATGAAGGTGATATTTTATGAAAGTTTAAATGAAGTGTTTCTGCCTTCAATGTTCATGATATGTATACAGTGACGACCTTATATTAAGTAGAAAATTTCGGGTCGTTACATGGATCTTGGGTGAGGCTGGCTGTGTTTTAAGATCAAGGTGATGTTTTATGAAAATTTAAATGAAGTATTTTTGCATTCAATATTCATGATATGTATACAGTGGCAACCTTAAATTAAATAGAAAATTTCGGGTTGTTACATGGATCTTAAGTGAGGCTGGCTGTGTTTTAAGATGAAGGTGATGGTGATGTTTTATGAAAGTTTAAATGAAGTATTTCCGCCTTCAATGTTTATGATATGTATACAGTGGTGACCTTAAATTAAGTAAAAAATTTCGGATCGGTACATGGGTCTTGGGAGGCCTAAAAATGAGTCAGAATTGGGTGGATCATGGTATAATTAACCAGTGCTCTTCAATTCTGTTTTTGCCTATAGAGAGAAGAAGAAAAGAGATGAGAGGGCTGGATCACAGACAGCTAACGAGGCCGTAACAAAATGAATGATTGGGTGAATACAGCATAGAGAGTGGTTTTTGAGAGCTGATGACATCAATTGGAGCACTCACCGCCTAATTTGAGATAAGACTTTAAAGAGTTATAGCAATATTCTAAATACCTAATACATATGCATTTGTACTGTATTGTTGGGTCTTCTGCATTTGGTAAATTTTGTATTCTGCCAGCTTCTACTTTTCTTCTCATTTGTATTACATATTTTGAGTGCAATTGTCTATACAAATGCTTTCGCACTCNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTATGTGCAACCATGTCTGGATTCTTTTGAGGGATTCTGATGAGGCATAAGTATATCTATTAGATCTTAGAAACCACGACTCTCTACAATGGTATGATAGTGTTTACTTTGCTTTTGGTTTCCTTAAAAGGCTTCAAACCAATGGAGATGTATTTCTTATAAACTTAGGAATCATTTCCTTAATTAGTGTGGGACTCTCTCCCAACGATTTTCAACAATCCTCCTTTCGAACAAAGTACACTACAGAGCCTCTCCCGAGGCCTATGAAGCCCTCGAACAACCTCCCCTTAATTGAGGCTTGACTCCTTTCTCTAGAGTCTTCGAACAAAGTACACCATTTGTTTGACATTTGAGTCACTTTTGACTACACTTTTAAGGGTCCGAACTTGTTTGTTCGATATTTGAGGATTCTATTGACATGGCTAAGTTAAGGACATAACTCTGATACCATGTTAGGAATCACGGATCTCTACAATGGTATGATATTGTCCATTTTGAACATAAGGTCTCATGACTTTGCTATTTGGTTTTCCCAAAAGGTCTCGTACCAATGAAAATATATTATTTATTTATAGACTCGTGATCATTCCCTTAATTAGCTAATGTGGGACTCCCTCCCAACAATCCTCAACATTGAAGGCTTATATGAATATATTTTAGATGTTTAGTCTGTTGCATTTCGTCACCCGTCCTTCCTTTATCTTCATCACCTTCATATAGTAACAATAACTTACAATAGATGAAATTATACTTTTAATTCTTCGAACTTGGAACTAATGTTTATTTAGTCTGATTGGTTTTGTTCAATTTGGAACCAATTTATGATCGATTTTATCAGAGACGAAACTGATTCAACAAAATTCGAACTCTGAGAACATAGAAGGGAAGAGAGATTTGCTAGTGGATCGAGGCAATTGAACCCGCAAAATAATCTATATTTGTGAGATGAAGCTATCCTTGAAGGCACAACCAGTGAGAGTGAAGAACAACTGACAAATCTGCAACCCAGAACCGAGCAACGATCAAGGACTCTAACGGTGATTACTCTTAGGGATGAGTTCCAAATTCAAAATCGATCGAGGAAAAAAGTTCGAGACAAAGGTATGAACAAAATGTGAAATGGCACATGAGTGGTTGGAATGATTAATAAATCAAATGCAAATTATATAAAGTGATACGACATTATGTGGTAGGAGCTTCATACATAATATTATTGGGAATTTGGAGCTTTTTGTACATACGTATTGTAGTTTAACAACACATACATTATTCTATTGTGTTTATATTTGGTGGATGACCATGGCCATACGGTCAAAGCCAACCAAGCACTCGGTATGGCTATAACTTTAAAATATTCAACAAAGAGATCTCTCTCGACCAA

mRNA sequence

CATGGCCTCTCAGTTTCGTCCTCTCTTGTTTCTTTCTTTTCTTTTCTTTTTTTTTTTTTTTTTTCCTCAATGAAAGCTTGGTTATTCATTAAAAGAAATGATATGCCAAACTTCCTNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCTCCCAGAAAAAATCTTCGACATGAAATCCTTTTTCTCTGGAAGTTTGTAAGATTTGCAAATTTCTTCTCATTCTTCTGCAATGGCGGCTGTTAATTCCGTGTCATTCTCAACGGTAAGTCAGTTTTCTGATCGAAGGTCGCCGGTTCCGTCGGCTCGTTCACTCGCCTCGAATTTCGACGGGTTTCGTTTCCGTTCTAGTGTTTTCTATCATCATTCGGGAGTTCGAACCTCGAGTTTCAGTTCTCGCTTGGTCATTCATTGCATGTCCGCCGGAACAGATGTGACGACTGTAGCTGAGACTAAATTGAACTTTCTAAAGGCGTATAAACGACCTATCCCTAGCATATACAACTCTGTTCTGCAAGAGTTGATTGTGCAGCAGCATTTGATGAGGTATAAGAGGACGTACCGTTATGATCCTGTTTTCGCCCTCGGTTTTGTTACTGTATATGATCAGCTTATGGATGGGTACCCTAGCGATGAGGATCGGGAGGCCATTTTCCAAGCCTACATTAAGGCGTTGAATGAGGATCCAGAGCAATATAGAATTGATGCTCAAAAATTGGAAGAGTGGGCTCGGTCTCAGTCTGCAGCTTCATTGGTTGAATTTGCATCAAAAGAAGGAGAAGTTGAGAGTGTTTTGAAAGACATTGCAGAACGAGCTGCGAGTAAGGGGAGTTTCAGTTACAGCCGATTTTTTGCGATTGGGCTATTTCGACTCCTCGAATTGGCAAATGCTACTGAACCCAGTATCTTGGAAAAGCTCTGTGCCGCTTTAAATGTTGACAAAAAAAGTGTGGACCGAGACCTTGATGTATACCGCAACCTGCTTTCGAAGTTGGTTCAGGCGAAGGAGCTCCTAAAGGAATACGTTGATAGAGAGAAGAAGAAAAGAGATGAGAGGGCTGGATCACAGACAGCTAACGAGGCCGTAACAAAATGAATGATTGGGTGAATACAGCATAGAGAGTGGTTTTTGAGAGCTGATGACATCAATTGGAGCACTCACCGCCTAATTTGAGATAAGACTTTAAAGAGTTATAGCAATATTCTAAATACCTAATACATATGCATTTGTACTGTATTGTTGGGTCTTCTGCATTTGGTAAATTTTGTATTCTGCCAGCTTCTACTTTTCTTCTCATTTGTATTACATATTTTGAGTGCAATTGTCTATACAAATGCTTTCGCACTCNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTATGTGCAACCATGTCTGGATTCTTTTGAGGGATTCTGATGAGGCATAAGTATATCTATTAGATCTTAGAAACCACGACTCTCTACAATGGTATGATAGTGTTTACTTTGCTTTTGGTTTCCTTAAAAGGCTTCAAACCAATGGAGATGTATTTCTTATAAACTTAGGAATCATTTCCTTAATTAGTGTGGGACTCTCTCCCAACGATTTTCAACAATCCTCCTTTCGAACAAAGTACACTACAGAGCCTCTCCCGAGGCCTATGAAGCCCTCGAACAACCTCCCCTTAATTGAGGCTTGACTCCTTTCTCTAGAGTCTTCGAACAAAGTACACCATTTGTTTGACATTTGAGTCACTTTTGACTACACTTTTAAGGGTCCGAACTTGTTTGTTCGATATTTGAGGATTCTATTGACATGGCTAAGTTAAGGACATAACTCTGATACCATGTTAGGAATCACGGATCTCTACAATGGTATGATATTGTCCATTTTGAACATAAGGTCTCATGACTTTGCTATTTGGTTTTCCCAAAAGGTCTCGTACCAATGAAAATATATTATTTATTTATAGACTCGTGATCATTCCCTTAATTAGCTAATGTGGGACTCCCTCCCAACAATCCTCAACATTGAAGGCTTATATGAATATATTTTAGATGTTTAGTCTGTTGCATTTCGTCACCCGTCCTTCCTTTATCTTCATCACCTTCATATAGTAACAATAACTTACAATAGATGAAATTATACTTTTAATTCTTCGAACTTGGAACTAATGTTTATTTAGTCTGATTGGTTTTGTTCAATTTGGAACCAATTTATGATCGATTTTATCAGAGACGAAACTGATTCAACAAAATTCGAACTCTGAGAACATAGAAGGGAAGAGAGATTTGCTAGTGGATCGAGGCAATTGAACCCGCAAAATAATCTATATTTGTGAGATGAAGCTATCCTTGAAGGCACAACCAGTGAGAGTGAAGAACAACTGACAAATCTGCAACCCAGAACCGAGCAACGATCAAGGACTCTAACGGTGATTACTCTTAGGGATGAGTTCCAAATTCAAAATCGATCGAGGAAAAAAGTTCGAGACAAAGGTATGAACAAAATGTGAAATGGCACATGAGTGGTTGGAATGATTAATAAATCAAATGCAAATTATATAAAGTGATACGACATTATGTGGTAGGAGCTTCATACATAATATTATTGGGAATTTGGAGCTTTTTGTACATACGTATTGTAGTTTAACAACACATACATTATTCTATTGTGTTTATATTTGGTGGATGACCATGGCCATACGGTCAAAGCCAACCAAGCACTCGGTATGGCTATAACTTTAAAATATTCAACAAAGAGATCTCTCTCGACCAA

Coding sequence (CDS)

ATGGCGGCTGTTAATTCCGTGTCATTCTCAACGGTAAGTCAGTTTTCTGATCGAAGGTCGCCGGTTCCGTCGGCTCGTTCACTCGCCTCGAATTTCGACGGGTTTCGTTTCCGTTCTAGTGTTTTCTATCATCATTCGGGAGTTCGAACCTCGAGTTTCAGTTCTCGCTTGGTCATTCATTGCATGTCCGCCGGAACAGATGTGACGACTGTAGCTGAGACTAAATTGAACTTTCTAAAGGCGTATAAACGACCTATCCCTAGCATATACAACTCTGTTCTGCAAGAGTTGATTGTGCAGCAGCATTTGATGAGGTATAAGAGGACGTACCGTTATGATCCTGTTTTCGCCCTCGGTTTTGTTACTGTATATGATCAGCTTATGGATGGGTACCCTAGCGATGAGGATCGGGAGGCCATTTTCCAAGCCTACATTAAGGCGTTGAATGAGGATCCAGAGCAATATAGAATTGATGCTCAAAAATTGGAAGAGTGGGCTCGGTCTCAGTCTGCAGCTTCATTGGTTGAATTTGCATCAAAAGAAGGAGAAGTTGAGAGTGTTTTGAAAGACATTGCAGAACGAGCTGCGAGTAAGGGGAGTTTCAGTTACAGCCGATTTTTTGCGATTGGGCTATTTCGACTCCTCGAATTGGCAAATGCTACTGAACCCAGTATCTTGGAAAAGCTCTGTGCCGCTTTAAATGTTGACAAAAAAAGTGTGGACCGAGACCTTGATGTATACCGCAACCTGCTTTCGAAGTTGGTTCAGGCGAAGGAGCTCCTAAAGGAATACGTTGATAGAGAGAAGAAGAAAAGAGATGAGAGGGCTGGATCACAGACAGCTAACGAGGCCGTAACAAAATGA

Protein sequence

MAAVNSVSFSTVSQFSDRRSPVPSARSLASNFDGFRFRSSVFYHHSGVRTSSFSSRLVIHCMSAGTDVTTVAETKLNFLKAYKRPIPSIYNSVLQELIVQQHLMRYKRTYRYDPVFALGFVTVYDQLMDGYPSDEDREAIFQAYIKALNEDPEQYRIDAQKLEEWARSQSAASLVEFASKEGEVESVLKDIAERAASKGSFSYSRFFAIGLFRLLELANATEPSILEKLCAALNVDKKSVDRDLDVYRNLLSKLVQAKELLKEYVDREKKKRDERAGSQTANEAVTK
Homology
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BLAST of Cp4.1LG04g03250 vs. Swiss-Prot
Match: THF1_SOLTU (Protein THYLAKOID FORMATION1, chloroplastic OS=Solanum tuberosum GN=THF1 PE=2 SV=1)

HSP 1 Score: 386.3 bits (991), Expect = 2.8e-106
Identity = 204/288 (70.83%), Postives = 246/288 (85.42%), Query Frame = 1 

Query: 1   MAAVNSVSFSTVSQFSDRRSPVPSARSLASNFDGFRFRSSVFYHHSGVRTSSFSSRLVIH 60
           MAAV SVSFS ++Q ++R+S V S+RS+    D FRFRS+  +    VR+S+ +SR V+H
Sbjct: 1   MAAVTSVSFSAITQSAERKSSVSSSRSI----DTFRFRSNFSFDSVNVRSSNSTSRFVVH 60

Query: 61  CMSAGT-DVTTVAETKLNFLKAYKRPIPSIYNSVLQELIVQQHLMRYKRTYRYDPVFALG 120
           C S+   D+ TVA+TKL FL AYKRPIP++YN+VLQELIVQQHL RYK++Y+YDPVFALG
Sbjct: 61  CTSSSAADLPTVADTKLKFLTAYKRPIPTVYNTVLQELIVQQHLTRYKKSYQYDPVFALG 120

Query: 121 FVTVYDQLMDGYPSDEDREAIFQAYIKALNEDPEQYRIDAQKLEEWARSQSAASLVEFAS 180
           FVTVYDQLM+GYPS+EDR AIF+AYI+AL EDPEQYR DAQKLEEWAR+Q+A +LV+F+S
Sbjct: 121 FVTVYDQLMEGYPSEEDRNAIFKAYIEALKEDPEQYRADAQKLEEWARTQNANTLVDFSS 180

Query: 181 KEGEVESVLKDIAERAASKGSFSYSRFFAIGLFRLLELANATEPSILEKLCAALNVDKKS 240
           KEGE+E++ KDIA+RA +K  F YSR FA+GLFRLLELAN T+P+ILEKLCAALNV+KKS
Sbjct: 181 KEGEIENIFKDIAQRAGTKDGFCYSRLFAVGLFRLLELANVTDPTILEKLCAALNVNKKS 240

Query: 241 VDRDLDVYRNLLSKLVQAKELLKEYVDREKKKRDERAGSQTANEAVTK 288
           VDRDLDVYRNLLSKLVQAKELLKEYV+REKKKR ER  +Q ANE VTK
Sbjct: 241 VDRDLDVYRNLLSKLVQAKELLKEYVEREKKKRGERE-TQKANETVTK 283

[Close]
BLAST of Cp4.1LG04g03250 vs. Swiss-Prot
Match: THF1_ARATH (Protein THYLAKOID FORMATION 1, chloroplastic OS=Arabidopsis thaliana GN=THF1 PE=1 SV=1)

HSP 1 Score: 370.9 bits (951), Expect = 1.2e-101
Identity = 201/286 (70.28%), Postives = 243/286 (84.97%), Query Frame = 1 

Query: 3   AVNSVSFSTVSQFSDRRSPVPSARSLASNFDGFRFRSSVFYHHSGVRTSSFSSRLVIHCM 62
           A++S+SF  + Q SD+ S   S+R LAS       R    +    + + S +S+ +IHCM
Sbjct: 5   AISSLSFPALGQ-SDKISNFASSRPLAS-----AIRICTKFSRLSLNSRS-TSKSLIHCM 64

Query: 63  SAGT-DVTTVAETKLNFLKAYKRPIPSIYNSVLQELIVQQHLMRYKRTYRYDPVFALGFV 122
           S  T DV  V+ETK  FLKAYKRPIPSIYN+VLQELIVQQHLMRYK+TYRYDPVFALGFV
Sbjct: 65  SNVTADVPPVSETKSKFLKAYKRPIPSIYNTVLQELIVQQHLMRYKKTYRYDPVFALGFV 124

Query: 123 TVYDQLMDGYPSDEDREAIFQAYIKALNEDPEQYRIDAQKLEEWARSQSAASLVEFASKE 182
           TVYDQLM+GYPSD+DR+AIF+AYI+ALNEDP+QYRIDAQK+EEWARSQ++ASLV+F+SKE
Sbjct: 125 TVYDQLMEGYPSDQDRDAIFKAYIEALNEDPKQYRIDAQKMEEWARSQTSASLVDFSSKE 184

Query: 183 GEVESVLKDIAERAASKGSFSYSRFFAIGLFRLLELANATEPSILEKLCAALNVDKKSVD 242
           G++E+VLKDIA RA SK  FSYSRFFA+GLFRLLELA+AT+P++L+KLCA+LN++KKSVD
Sbjct: 185 GDIEAVLKDIAGRAGSKEGFSYSRFFAVGLFRLLELASATDPTVLDKLCASLNINKKSVD 244

Query: 243 RDLDVYRNLLSKLVQAKELLKEYVDREKKKRDERAGSQTANEAVTK 288
           RDLDVYRNLLSKLVQAKELLKEYV+REKKK+ ERA SQ ANE ++K
Sbjct: 245 RDLDVYRNLLSKLVQAKELLKEYVEREKKKQGERAQSQKANETISK 283

[Close]
BLAST of Cp4.1LG04g03250 vs. Swiss-Prot
Match: THF1_ORYSJ (Protein THYLAKOID FORMATION1, chloroplastic OS=Oryza sativa subsp. japonica GN=THF1 PE=2 SV=1)

HSP 1 Score: 357.8 bits (917), Expect = 1.1e-97
Identity = 194/288 (67.36%), Postives = 236/288 (81.94%), Query Frame = 1 

Query: 1   MAAVNSVSFSTVSQFSDRRSPVPSARSLASNFDGFRFRSSVFYHHSGVRTSSFSSRLVIH 60
           MAA++S+ F+ + + +D R   PS  + A+         SV             SR V+ 
Sbjct: 1   MAAISSLPFAALRRAADCR---PSTAAAAAGAGAGAVVLSVRPRRG--------SRSVVR 60

Query: 61  CMSAGTDVT-TVAETKLNFLKAYKRPIPSIYNSVLQELIVQQHLMRYKRTYRYDPVFALG 120
           C++   DV  TVAETK+NFLK+YKRPI SIY++VLQEL+VQQHLMRYK TY+YD VFALG
Sbjct: 61  CVATAGDVPPTVAETKMNFLKSYKRPILSIYSTVLQELLVQQHLMRYKTTYQYDAVFALG 120

Query: 121 FVTVYDQLMDGYPSDEDREAIFQAYIKALNEDPEQYRIDAQKLEEWARSQSAASLVEFAS 180
           FVTVYDQLM+GYPS+EDR+AIF+AYI ALNEDPEQYR DAQK+EEWARSQ+  SLVEF+S
Sbjct: 121 FVTVYDQLMEGYPSNEDRDAIFKAYITALNEDPEQYRADAQKMEEWARSQNGNSLVEFSS 180

Query: 181 KEGEVESVLKDIAERAASKGSFSYSRFFAIGLFRLLELANATEPSILEKLCAALNVDKKS 240
           K+GE+E++LKDI+ERA  KGSFSYSRFFA+GLFRLLELANATEP+IL+KLCAALN++K+S
Sbjct: 181 KDGEIEAILKDISERAQGKGSFSYSRFFAVGLFRLLELANATEPTILDKLCAALNINKRS 240

Query: 241 VDRDLDVYRNLLSKLVQAKELLKEYVDREKKKRDERAGSQTANEAVTK 288
           VDRDLDVYRN+LSKLVQAKELLKEYV+REKKKR+ER+ +  +NEAVTK
Sbjct: 241 VDRDLDVYRNILSKLVQAKELLKEYVEREKKKREERSETPKSNEAVTK 277

[Close]
BLAST of Cp4.1LG04g03250 vs. Swiss-Prot
Match: THF1_ACAM1 (Protein Thf1 OS=Acaryochloris marina (strain MBIC 11017) GN=thf1 PE=3 SV=1)

HSP 1 Score: 152.1 bits (383), Expect = 9.0e-36
Identity = 84/219 (38.36%), Postives = 136/219 (62.10%), Query Frame = 1 

Query: 67  DVTTVAETKLNFLKAYKRPIPSIYNSVLQELIVQQHLMRYKRTYRYDPVFALGFVTVYDQ 126
           ++ TV++TK  F   + RP+ S+Y  V++EL+V+ HL+R    +RYDP+FALG  T +D+
Sbjct: 3   NLRTVSDTKRAFYSIHTRPVNSVYRRVVEELMVEMHLLRVNEDFRYDPIFALGVTTSFDR 62

Query: 127 LMDGYPSDEDREAIFQAYIKALNEDPEQYRIDAQKLEEWARSQSAASLVEF---ASKEG- 186
            MDGY  + D++AIF A  KA   DP Q + D Q+L E A+S+SA  ++++   A+  G 
Sbjct: 63  FMDGYQPENDKDAIFSAICKAQEADPVQMKKDGQRLTELAQSKSAQEMLDWITQAANSGG 122

Query: 187 -EVESVLKDIAERAASKGSFSYSRFFAIGLFRLLELA--NATE-----PSILEKLCAALN 246
            E++  L++IA+       F YSR FAIGLF LLEL+  N T+        L  +C  LN
Sbjct: 123 DELQWQLRNIAQNP----KFKYSRLFAIGLFTLLELSEGNITQDEESLAEFLPNICTVLN 182

Query: 247 VDKKSVDRDLDVYRNLLSKLVQAKELLKEYVDREKKKRD 274
           + +  + +DL++YR  L K+ Q ++ + + ++ +KK+R+
Sbjct: 183 ISESKLQKDLEIYRGNLDKIAQVRQAMDDILEAQKKRRE 217

[Close]
BLAST of Cp4.1LG04g03250 vs. Swiss-Prot
Match: THF1_TRIEI (Protein Thf1 OS=Trichodesmium erythraeum (strain IMS101) GN=thf1 PE=3 SV=1)

HSP 1 Score: 141.4 bits (355), Expect = 1.6e-32
Identity = 80/216 (37.04%), Postives = 129/216 (59.72%), Query Frame = 1 

Query: 70  TVAETKLNFLKAYKRPIPSIYNSVLQELIVQQHLMRYKRTYRYDPVFALGFVTVYDQLMD 129
           TV++TK  F   + RPI SIYN V++EL+V+ HL+     Y Y+P +ALG VT +D+ M 
Sbjct: 6   TVSDTKKTFYHFHTRPINSIYNRVIEELLVEMHLISVNVDYSYNPFYALGVVTAFDRFMQ 65

Query: 130 GYPSDEDREAIFQAYIKALNEDPEQYRIDAQKLEEWARSQSAASLVEF--ASKEGEVESV 189
           GY   ED+ +IF A I+   EDP +YR DA+ LE+ A   SA+ ++ +   SK  +    
Sbjct: 66  GYSPQEDKTSIFNALIQGQEEDPNKYRSDAKGLEDLAGKISASDILSWICLSKNIDNTQY 125

Query: 190 LKDIAERAASKGSFSYSRFFAIGLFRLLELANA-------TEPSILEKLCAALNVDKKSV 249
           L+D     +    F YSR FAIGLF LLE+ +             L+K+C +LN+ ++ +
Sbjct: 126 LQDDLRAISENSKFRYSRLFAIGLFTLLEIVDTELIKEQEKRTEALKKICQSLNLVEEKL 185

Query: 250 DRDLDVYRNLLSKLVQAKELLKEYVDREKKKRDERA 277
            +D+D+Y + L ++ QA+  +++ +   +KKR++R+
Sbjct: 186 LKDIDLYLSNLERVAQARSAMEDTLAAMRKKREKRS 221

[Close]
BLAST of Cp4.1LG04g03250 vs. TrEMBL
Match: A0A0A0K3P0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G046130 PE=3 SV=1)

HSP 1 Score: 492.3 bits (1266), Expect = 4.1e-136
Identity = 256/287 (89.20%), Postives = 275/287 (95.82%), Query Frame = 1 

Query: 1   MAAVNSVSFSTVSQFSDRRSPVPSARSLASNFDGFRFRSSVFYHHSGVRTSSFSSRLVIH 60
           MAAVNS+SFST++Q SDRR  +PS+RS +SNF GF FR+SVF H+S VR S+FSSR+VIH
Sbjct: 1   MAAVNSISFSTLNQCSDRRLLLPSSRSHSSNFHGFPFRTSVFTHYSRVRASTFSSRMVIH 60

Query: 61  CMSAGTDVTTVAETKLNFLKAYKRPIPSIYNSVLQELIVQQHLMRYKRTYRYDPVFALGF 120
           CMSAGTDVTTVAETKLNFLKAYKRPIPSIYN+VLQELIVQQHLMRYKRTYRYDPVFALGF
Sbjct: 61  CMSAGTDVTTVAETKLNFLKAYKRPIPSIYNTVLQELIVQQHLMRYKRTYRYDPVFALGF 120

Query: 121 VTVYDQLMDGYPSDEDREAIFQAYIKALNEDPEQYRIDAQKLEEWARSQSAASLVEFASK 180
           VTVYDQLM+GYPSDEDREAIFQAYIKALNEDPEQYRIDA+K EEWARSQ+AASLVEFAS+
Sbjct: 121 VTVYDQLMEGYPSDEDREAIFQAYIKALNEDPEQYRIDAKKFEEWARSQTAASLVEFASR 180

Query: 181 EGEVESVLKDIAERAASKGSFSYSRFFAIGLFRLLELANATEPSILEKLCAALNVDKKSV 240
           EGEVES+LKDIAERA SKG+FSYSRFFAIGLFRLLELANATEPSILEKLCAALN+DKK V
Sbjct: 181 EGEVESILKDIAERAGSKGNFSYSRFFAIGLFRLLELANATEPSILEKLCAALNIDKKGV 240

Query: 241 DRDLDVYRNLLSKLVQAKELLKEYVDREKKKRDERAGSQTANEAVTK 288
           DRDLDVYRNLLSKLVQAKELLKEYVDREKKKRDERAGSQTANEA+TK
Sbjct: 241 DRDLDVYRNLLSKLVQAKELLKEYVDREKKKRDERAGSQTANEAITK 287

[Close]
BLAST of Cp4.1LG04g03250 vs. TrEMBL
Match: A0A061E4M4_THECC (Photosystem II reaction center PSB29 protein OS=Theobroma cacao GN=TCM_007929 PE=3 SV=1)

HSP 1 Score: 438.7 bits (1127), Expect = 5.4e-120
Identity = 229/288 (79.51%), Postives = 260/288 (90.28%), Query Frame = 1 

Query: 1   MAAVNSVSFSTVSQFS-DRRSPVPSARSLASNFDGFRFRSSVFYHHSGVRTSSFSSRLVI 60
           MAAV+S+S S + Q S DR+  VPSAR LASNF+G RFR+SV YH  GVR S+ +S  V+
Sbjct: 1   MAAVSSLSLSAIGQTSGDRKVNVPSARYLASNFEGLRFRTSVLYHSVGVRGSASASPSVV 60

Query: 61  HCMSAGTDVTTVAETKLNFLKAYKRPIPSIYNSVLQELIVQQHLMRYKRTYRYDPVFALG 120
           HCM A TDV TV+ETKLNFLKAYKRPIPS+YN+VLQELIVQQHLMRYK TYRYD VFALG
Sbjct: 61  HCMCAATDVPTVSETKLNFLKAYKRPIPSVYNTVLQELIVQQHLMRYKWTYRYDAVFALG 120

Query: 121 FVTVYDQLMDGYPSDEDREAIFQAYIKALNEDPEQYRIDAQKLEEWARSQSAASLVEFAS 180
           FVTVYDQLM+GYPSDEDR+AIFQAYIKAL EDP+QYRIDAQKLEEWARSQ+++SLVEF+S
Sbjct: 121 FVTVYDQLMEGYPSDEDRDAIFQAYIKALKEDPQQYRIDAQKLEEWARSQTSSSLVEFSS 180

Query: 181 KEGEVESVLKDIAERAASKGSFSYSRFFAIGLFRLLELANATEPSILEKLCAALNVDKKS 240
           ++GEVE++LKDIAERA   GSFSYSRFFA+GLFRLLELANATEP++LEKLCAALN++K+S
Sbjct: 181 RDGEVEAILKDIAERAGRMGSFSYSRFFAVGLFRLLELANATEPTVLEKLCAALNINKRS 240

Query: 241 VDRDLDVYRNLLSKLVQAKELLKEYVDREKKKRDERAGSQTANEAVTK 288
           VDRDLDVYRNLLSKLVQAKELLKEYVDREKKKR+ER+ SQ ANEAV K
Sbjct: 241 VDRDLDVYRNLLSKLVQAKELLKEYVDREKKKREERSESQKANEAVKK 288

[Close]
BLAST of Cp4.1LG04g03250 vs. TrEMBL
Match: M5WTF3_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa009554mg PE=3 SV=1)

HSP 1 Score: 436.0 bits (1120), Expect = 3.5e-119
Identity = 226/287 (78.75%), Postives = 259/287 (90.24%), Query Frame = 1 

Query: 1   MAAVNSVSFSTVSQFSDRRSPVPSARSLASNFDGFRFRSSVFYHHSGVRTSSFSSRLVIH 60
           MAAV S+SFS +SQ SDR+S + S R+LA N +G R R+S   ++ GVR SS SSR++IH
Sbjct: 1   MAAVASLSFSALSQCSDRKSVISSTRNLAYNSEGLRLRTSFSCNNGGVRASSSSSRMMIH 60

Query: 61  CMSAGTDVTTVAETKLNFLKAYKRPIPSIYNSVLQELIVQQHLMRYKRTYRYDPVFALGF 120
           CMS  +   TVA+TKLNFLKAYKRPIPS+YN+VLQELIVQQHL++YK++YRYDPVFALGF
Sbjct: 61  CMSGASYAPTVADTKLNFLKAYKRPIPSVYNTVLQELIVQQHLIKYKKSYRYDPVFALGF 120

Query: 121 VTVYDQLMDGYPSDEDREAIFQAYIKALNEDPEQYRIDAQKLEEWARSQSAASLVEFASK 180
           VTV+DQLMDGYPSDEDREAIFQAYI+ALNEDPEQYRIDAQKLEEWAR+Q+++SLVEF S+
Sbjct: 121 VTVFDQLMDGYPSDEDREAIFQAYIEALNEDPEQYRIDAQKLEEWARAQTSSSLVEFPSR 180

Query: 181 EGEVESVLKDIAERAASKGSFSYSRFFAIGLFRLLELANATEPSILEKLCAALNVDKKSV 240
           EGE+E  LKDIAERAASKGSFSYSRFFA+GLFRLLELANATEP+ILEKLCAALN+DK+SV
Sbjct: 181 EGEIEGTLKDIAERAASKGSFSYSRFFAVGLFRLLELANATEPTILEKLCAALNIDKRSV 240

Query: 241 DRDLDVYRNLLSKLVQAKELLKEYVDREKKKRDERAGSQTANEAVTK 288
           DRDLDVYRNLLSKLVQAKELLKEYV REKKKR+ER  +Q ANEAVTK
Sbjct: 241 DRDLDVYRNLLSKLVQAKELLKEYVAREKKKREERVENQKANEAVTK 287

[Close]
BLAST of Cp4.1LG04g03250 vs. TrEMBL
Match: A0A0D2V4U5_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_012G132100 PE=3 SV=1)

HSP 1 Score: 429.1 bits (1102), Expect = 4.2e-117
Identity = 223/288 (77.43%), Postives = 257/288 (89.24%), Query Frame = 1 

Query: 1   MAAVNSVSFSTVSQFS-DRRSPVPSARSLASNFDGFRFRSSVFYHHSGVRTSSFSSRLVI 60
           MAAV+S+SF  + Q S DR+  VPSAR LASNF+GFRFR+S+ Y   G+R S+ +S  V 
Sbjct: 1   MAAVSSLSFPAIGQTSGDRKLNVPSARYLASNFEGFRFRTSLLYQSVGLRASTTASPSVF 60

Query: 61  HCMSAGTDVTTVAETKLNFLKAYKRPIPSIYNSVLQELIVQQHLMRYKRTYRYDPVFALG 120
           +CMS  TD  TV+ETK +FLKAYKRPIPS+YN+VLQELIVQQHLMRYK+TYRYD VFALG
Sbjct: 61  YCMSTATDTPTVSETKSSFLKAYKRPIPSVYNTVLQELIVQQHLMRYKKTYRYDAVFALG 120

Query: 121 FVTVYDQLMDGYPSDEDREAIFQAYIKALNEDPEQYRIDAQKLEEWARSQSAASLVEFAS 180
           FVTVYDQLM+GYPSDEDR+AIFQAYI AL EDP+QYR DAQKLEEWAR+Q+++SLVEF+S
Sbjct: 121 FVTVYDQLMEGYPSDEDRDAIFQAYINALKEDPQQYRADAQKLEEWARAQTSSSLVEFSS 180

Query: 181 KEGEVESVLKDIAERAASKGSFSYSRFFAIGLFRLLELANATEPSILEKLCAALNVDKKS 240
           ++GEVE++LKDIAERA SKGSFSYSRFFAIGLFRLLELANATEP++LEKLCAALN+DK+S
Sbjct: 181 RDGEVEAILKDIAERAGSKGSFSYSRFFAIGLFRLLELANATEPTVLEKLCAALNIDKRS 240

Query: 241 VDRDLDVYRNLLSKLVQAKELLKEYVDREKKKRDERAGSQTANEAVTK 288
           VDRDLDVYRNLLSKLVQAKELLKEYVDREKKKR+ER+ S  ANEAV K
Sbjct: 241 VDRDLDVYRNLLSKLVQAKELLKEYVDREKKKREERSESPKANEAVKK 288

[Close]
BLAST of Cp4.1LG04g03250 vs. TrEMBL
Match: A0A0B0MJ75_GOSAR (Thylakoid formation 1, chloroplastic-like protein OS=Gossypium arboreum GN=F383_18808 PE=3 SV=1)

HSP 1 Score: 426.8 bits (1096), Expect = 2.1e-116
Identity = 221/288 (76.74%), Postives = 257/288 (89.24%), Query Frame = 1 

Query: 1   MAAVNSVSFSTVSQFS-DRRSPVPSARSLASNFDGFRFRSSVFYHHSGVRTSSFSSRLVI 60
           MAAV+S+SF  + Q S DR+  VPS R LASNF+GFRFR+S+ Y   G+R S+ +S  V+
Sbjct: 1   MAAVSSLSFPAIGQTSGDRKLNVPSPRYLASNFEGFRFRTSLLYQSVGLRASTTASPSVV 60

Query: 61  HCMSAGTDVTTVAETKLNFLKAYKRPIPSIYNSVLQELIVQQHLMRYKRTYRYDPVFALG 120
           +CMS  TD  TV+ETK +FLKAYKRPIPS+YN+VLQELIVQQHLMRYK+TYRYD VFALG
Sbjct: 61  YCMSTATDTPTVSETKSSFLKAYKRPIPSVYNTVLQELIVQQHLMRYKKTYRYDAVFALG 120

Query: 121 FVTVYDQLMDGYPSDEDREAIFQAYIKALNEDPEQYRIDAQKLEEWARSQSAASLVEFAS 180
           FVTVYDQLM+GYPSDEDR+AIFQAYI AL EDP+QYR DAQKLEEWAR+Q+++SLV+F+S
Sbjct: 121 FVTVYDQLMEGYPSDEDRDAIFQAYINALKEDPQQYRADAQKLEEWARAQTSSSLVKFSS 180

Query: 181 KEGEVESVLKDIAERAASKGSFSYSRFFAIGLFRLLELANATEPSILEKLCAALNVDKKS 240
           ++GEVE++LKDIAERA SKGSFSYSRFFAIGLFRLLELANATEP++LEKLCAALN+DK+S
Sbjct: 181 RDGEVEAILKDIAERAGSKGSFSYSRFFAIGLFRLLELANATEPTVLEKLCAALNIDKRS 240

Query: 241 VDRDLDVYRNLLSKLVQAKELLKEYVDREKKKRDERAGSQTANEAVTK 288
           VDRDLDVYRNLLSKLVQAKELLKEYVDREKKKR+ER+ S  ANEAV K
Sbjct: 241 VDRDLDVYRNLLSKLVQAKELLKEYVDREKKKREERSESPKANEAVKK 288

[Close]
BLAST of Cp4.1LG04g03250 vs. TAIR10
Match: AT2G20890.1 (AT2G20890.1 photosystem II reaction center PSB29 protein)

HSP 1 Score: 370.9 bits (951), Expect = 6.9e-103
Identity = 201/286 (70.28%), Postives = 243/286 (84.97%), Query Frame = 1 

Query: 3   AVNSVSFSTVSQFSDRRSPVPSARSLASNFDGFRFRSSVFYHHSGVRTSSFSSRLVIHCM 62
           A++S+SF  + Q SD+ S   S+R LAS       R    +    + + S +S+ +IHCM
Sbjct: 5   AISSLSFPALGQ-SDKISNFASSRPLAS-----AIRICTKFSRLSLNSRS-TSKSLIHCM 64

Query: 63  SAGT-DVTTVAETKLNFLKAYKRPIPSIYNSVLQELIVQQHLMRYKRTYRYDPVFALGFV 122
           S  T DV  V+ETK  FLKAYKRPIPSIYN+VLQELIVQQHLMRYK+TYRYDPVFALGFV
Sbjct: 65  SNVTADVPPVSETKSKFLKAYKRPIPSIYNTVLQELIVQQHLMRYKKTYRYDPVFALGFV 124

Query: 123 TVYDQLMDGYPSDEDREAIFQAYIKALNEDPEQYRIDAQKLEEWARSQSAASLVEFASKE 182
           TVYDQLM+GYPSD+DR+AIF+AYI+ALNEDP+QYRIDAQK+EEWARSQ++ASLV+F+SKE
Sbjct: 125 TVYDQLMEGYPSDQDRDAIFKAYIEALNEDPKQYRIDAQKMEEWARSQTSASLVDFSSKE 184

Query: 183 GEVESVLKDIAERAASKGSFSYSRFFAIGLFRLLELANATEPSILEKLCAALNVDKKSVD 242
           G++E+VLKDIA RA SK  FSYSRFFA+GLFRLLELA+AT+P++L+KLCA+LN++KKSVD
Sbjct: 185 GDIEAVLKDIAGRAGSKEGFSYSRFFAVGLFRLLELASATDPTVLDKLCASLNINKKSVD 244

Query: 243 RDLDVYRNLLSKLVQAKELLKEYVDREKKKRDERAGSQTANEAVTK 288
           RDLDVYRNLLSKLVQAKELLKEYV+REKKK+ ERA SQ ANE ++K
Sbjct: 245 RDLDVYRNLLSKLVQAKELLKEYVEREKKKQGERAQSQKANETISK 283

[Close]
BLAST of Cp4.1LG04g03250 vs. NCBI nr
Match: gi|659110691|ref|XP_008455361.1| (PREDICTED: protein THYLAKOID FORMATION1, chloroplastic [Cucumis melo])

HSP 1 Score: 506.5 bits (1303), Expect = 3.0e-140
Identity = 261/287 (90.94%), Postives = 280/287 (97.56%), Query Frame = 1 

Query: 1   MAAVNSVSFSTVSQFSDRRSPVPSARSLASNFDGFRFRSSVFYHHSGVRTSSFSSRLVIH 60
           MAAVNS+SFST++Q SDRR PVPS+RSL+SNFDGFRFR+S+F H+S VR S+FSSR+VIH
Sbjct: 1   MAAVNSISFSTLNQCSDRRFPVPSSRSLSSNFDGFRFRTSLFTHYSRVRPSTFSSRMVIH 60

Query: 61  CMSAGTDVTTVAETKLNFLKAYKRPIPSIYNSVLQELIVQQHLMRYKRTYRYDPVFALGF 120
           CMSAGTDVTTVAETKLNFLKAYKRPIPSIYN+VLQELIVQQHLMRYKRTYRYDPVFALGF
Sbjct: 61  CMSAGTDVTTVAETKLNFLKAYKRPIPSIYNTVLQELIVQQHLMRYKRTYRYDPVFALGF 120

Query: 121 VTVYDQLMDGYPSDEDREAIFQAYIKALNEDPEQYRIDAQKLEEWARSQSAASLVEFASK 180
           VTVYDQLM+GYPSDEDREAIFQAYIKALNEDPEQYRIDAQKLEEWARSQ+AASLVEFAS+
Sbjct: 121 VTVYDQLMEGYPSDEDREAIFQAYIKALNEDPEQYRIDAQKLEEWARSQTAASLVEFASR 180

Query: 181 EGEVESVLKDIAERAASKGSFSYSRFFAIGLFRLLELANATEPSILEKLCAALNVDKKSV 240
           EGEVES+LKDIAERA SKG+FSYSRFFAIGLFRLLELANATEPSILEKLCAALN+DKK V
Sbjct: 181 EGEVESILKDIAERAGSKGNFSYSRFFAIGLFRLLELANATEPSILEKLCAALNIDKKGV 240

Query: 241 DRDLDVYRNLLSKLVQAKELLKEYVDREKKKRDERAGSQTANEAVTK 288
           DRDLDVYRNLLSKLVQAKELLKEY+DREKKKRDERAGSQTANEA+TK
Sbjct: 241 DRDLDVYRNLLSKLVQAKELLKEYIDREKKKRDERAGSQTANEAITK 287

[Close]
BLAST of Cp4.1LG04g03250 vs. NCBI nr
Match: gi|449438054|ref|XP_004136805.1| (PREDICTED: protein THYLAKOID FORMATION1, chloroplastic [Cucumis sativus])

HSP 1 Score: 492.3 bits (1266), Expect = 5.9e-136
Identity = 256/287 (89.20%), Postives = 275/287 (95.82%), Query Frame = 1 

Query: 1   MAAVNSVSFSTVSQFSDRRSPVPSARSLASNFDGFRFRSSVFYHHSGVRTSSFSSRLVIH 60
           MAAVNS+SFST++Q SDRR  +PS+RS +SNF GF FR+SVF H+S VR S+FSSR+VIH
Sbjct: 1   MAAVNSISFSTLNQCSDRRLLLPSSRSHSSNFHGFPFRTSVFTHYSRVRASTFSSRMVIH 60

Query: 61  CMSAGTDVTTVAETKLNFLKAYKRPIPSIYNSVLQELIVQQHLMRYKRTYRYDPVFALGF 120
           CMSAGTDVTTVAETKLNFLKAYKRPIPSIYN+VLQELIVQQHLMRYKRTYRYDPVFALGF
Sbjct: 61  CMSAGTDVTTVAETKLNFLKAYKRPIPSIYNTVLQELIVQQHLMRYKRTYRYDPVFALGF 120

Query: 121 VTVYDQLMDGYPSDEDREAIFQAYIKALNEDPEQYRIDAQKLEEWARSQSAASLVEFASK 180
           VTVYDQLM+GYPSDEDREAIFQAYIKALNEDPEQYRIDA+K EEWARSQ+AASLVEFAS+
Sbjct: 121 VTVYDQLMEGYPSDEDREAIFQAYIKALNEDPEQYRIDAKKFEEWARSQTAASLVEFASR 180

Query: 181 EGEVESVLKDIAERAASKGSFSYSRFFAIGLFRLLELANATEPSILEKLCAALNVDKKSV 240
           EGEVES+LKDIAERA SKG+FSYSRFFAIGLFRLLELANATEPSILEKLCAALN+DKK V
Sbjct: 181 EGEVESILKDIAERAGSKGNFSYSRFFAIGLFRLLELANATEPSILEKLCAALNIDKKGV 240

Query: 241 DRDLDVYRNLLSKLVQAKELLKEYVDREKKKRDERAGSQTANEAVTK 288
           DRDLDVYRNLLSKLVQAKELLKEYVDREKKKRDERAGSQTANEA+TK
Sbjct: 241 DRDLDVYRNLLSKLVQAKELLKEYVDREKKKRDERAGSQTANEAITK 287

[Close]
BLAST of Cp4.1LG04g03250 vs. NCBI nr
Match: gi|694324363|ref|XP_009353207.1| (PREDICTED: protein THYLAKOID FORMATION1, chloroplastic-like [Pyrus x bretschneideri])

HSP 1 Score: 443.0 bits (1138), Expect = 4.1e-121
Identity = 228/287 (79.44%), Postives = 260/287 (90.59%), Query Frame = 1 

Query: 1   MAAVNSVSFSTVSQFSDRRSPVPSARSLASNFDGFRFRSSVFYHHSGVRTSSFSSRLVIH 60
           MAAV S+SFS +SQ SDR+S V  AR+L SN +G RFR+S+  H+ G+R SS+SSR+V+H
Sbjct: 1   MAAVASLSFSALSQCSDRKSVVSPARNLGSNAEGIRFRTSISSHYGGIRASSWSSRMVVH 60

Query: 61  CMSAGTDVTTVAETKLNFLKAYKRPIPSIYNSVLQELIVQQHLMRYKRTYRYDPVFALGF 120
           CM+  +D  TVA+TKLNFLKAYKRPIPS+YNSVLQELIVQQHLM+YKRTYRYDPVFALGF
Sbjct: 61  CMAGSSDSPTVADTKLNFLKAYKRPIPSVYNSVLQELIVQQHLMKYKRTYRYDPVFALGF 120

Query: 121 VTVYDQLMDGYPSDEDREAIFQAYIKALNEDPEQYRIDAQKLEEWARSQSAASLVEFASK 180
           VTVYDQLMDGYPSDEDREAIFQAYIKALNEDPEQYR DAQKLEEWAR+Q+++SLVEF S+
Sbjct: 121 VTVYDQLMDGYPSDEDREAIFQAYIKALNEDPEQYRTDAQKLEEWARAQTSSSLVEFPSR 180

Query: 181 EGEVESVLKDIAERAASKGSFSYSRFFAIGLFRLLELANATEPSILEKLCAALNVDKKSV 240
           EGEVE+ LKDIAERAA K SFSYSRFFAIGLFRLLE+A ATEP++LEKLCAALN+DK+SV
Sbjct: 181 EGEVEAALKDIAERAAGKESFSYSRFFAIGLFRLLEVAKATEPTVLEKLCAALNIDKRSV 240

Query: 241 DRDLDVYRNLLSKLVQAKELLKEYVDREKKKRDERAGSQTANEAVTK 288
           DRDLDVYRNLLSKLVQAKELL+EYV REKKKR+ERA +Q A+E VTK
Sbjct: 241 DRDLDVYRNLLSKLVQAKELLREYVAREKKKREERAETQKASETVTK 287

[Close]
BLAST of Cp4.1LG04g03250 vs. NCBI nr
Match: gi|694320241|ref|XP_009350521.1| (PREDICTED: protein THYLAKOID FORMATION1, chloroplastic-like [Pyrus x bretschneideri])

HSP 1 Score: 442.6 bits (1137), Expect = 5.3e-121
Identity = 226/287 (78.75%), Postives = 260/287 (90.59%), Query Frame = 1 

Query: 1   MAAVNSVSFSTVSQFSDRRSPVPSARSLASNFDGFRFRSSVFYHHSGVRTSSFSSRLVIH 60
           MAAV ++SFS +SQFSDR+S V S R+LASN DG RFR+S+  H+ G+R SS SSR+V+H
Sbjct: 1   MAAVAALSFSALSQFSDRKSVVSSTRNLASNADGLRFRTSISSHNGGIRASSSSSRMVVH 60

Query: 61  CMSAGTDVTTVAETKLNFLKAYKRPIPSIYNSVLQELIVQQHLMRYKRTYRYDPVFALGF 120
           CM+  +D+ TVA+TKLNFLKAYKRPIPS+YNSVLQELIVQQHLM+YKRTYRYDPVFALGF
Sbjct: 61  CMAGSSDIPTVADTKLNFLKAYKRPIPSVYNSVLQELIVQQHLMKYKRTYRYDPVFALGF 120

Query: 121 VTVYDQLMDGYPSDEDREAIFQAYIKALNEDPEQYRIDAQKLEEWARSQSAASLVEFASK 180
           VTVYDQLMDGYPSDEDR AIFQAY+KALNEDPEQYRIDAQKLEEWAR+Q+++SLVEF S+
Sbjct: 121 VTVYDQLMDGYPSDEDRVAIFQAYVKALNEDPEQYRIDAQKLEEWARAQTSSSLVEFPSR 180

Query: 181 EGEVESVLKDIAERAASKGSFSYSRFFAIGLFRLLELANATEPSILEKLCAALNVDKKSV 240
           EG+VE+ LKDIAERAA K SFSYSRFFAIGLFRLLE+A ATEP++LEKLCAALN+DK+SV
Sbjct: 181 EGKVEAALKDIAERAAGKESFSYSRFFAIGLFRLLEVAKATEPTVLEKLCAALNIDKRSV 240

Query: 241 DRDLDVYRNLLSKLVQAKELLKEYVDREKKKRDERAGSQTANEAVTK 288
           DRDLDVYRNLLSKLVQAKELL+EYV REKKKR+ER  +Q A+E V K
Sbjct: 241 DRDLDVYRNLLSKLVQAKELLREYVAREKKKREERVETQKASETVAK 287

[Close]
BLAST of Cp4.1LG04g03250 vs. NCBI nr
Match: gi|658025445|ref|XP_008348123.1| (PREDICTED: protein THYLAKOID FORMATION1, chloroplastic-like [Malus domestica])

HSP 1 Score: 441.8 bits (1135), Expect = 9.1e-121
Identity = 228/287 (79.44%), Postives = 258/287 (89.90%), Query Frame = 1 

Query: 1   MAAVNSVSFSTVSQFSDRRSPVPSARSLASNFDGFRFRSSVFYHHSGVRTSSFSSRLVIH 60
           MAAV S+SFS +SQ SDR+S V SAR+L SN +G RFR+S+  H+ G+R SS SSR+V+H
Sbjct: 1   MAAVASLSFSALSQCSDRKSVVSSARNLGSNAEGIRFRTSISSHYGGIRASSSSSRMVVH 60

Query: 61  CMSAGTDVTTVAETKLNFLKAYKRPIPSIYNSVLQELIVQQHLMRYKRTYRYDPVFALGF 120
           CM+  +D  TVA+TKLNFLKAYKRPIPS+YNSVLQELIVQQHLM+YKRTYRYDPVFALGF
Sbjct: 61  CMAGSSDAPTVADTKLNFLKAYKRPIPSVYNSVLQELIVQQHLMKYKRTYRYDPVFALGF 120

Query: 121 VTVYDQLMDGYPSDEDREAIFQAYIKALNEDPEQYRIDAQKLEEWARSQSAASLVEFASK 180
           VTVYDQLMDGYPSDEDREAIFQAYIKALNEDPEQYR DAQKLEEWAR+Q+++SLVEF S+
Sbjct: 121 VTVYDQLMDGYPSDEDREAIFQAYIKALNEDPEQYRTDAQKLEEWARAQTSSSLVEFPSR 180

Query: 181 EGEVESVLKDIAERAASKGSFSYSRFFAIGLFRLLELANATEPSILEKLCAALNVDKKSV 240
           EGEVE  LKDIAERAA K SFSYSRFFAIGLFRLLE+A ATEP++LEKLCAALN+DK+SV
Sbjct: 181 EGEVEVALKDIAERAAGKESFSYSRFFAIGLFRLLEVAKATEPTVLEKLCAALNIDKRSV 240

Query: 241 DRDLDVYRNLLSKLVQAKELLKEYVDREKKKRDERAGSQTANEAVTK 288
           DRDLDVYRNLLSKLVQAKELL+EYV REKKKR+ER  +Q A+E VTK
Sbjct: 241 DRDLDVYRNLLSKLVQAKELLREYVAREKKKREERVETQKASETVTK 287

The following BLAST results are available for this feature:
BLAST of Cp4.1LG04g03250 vs. Swiss-Prot
Match NameE-valueIdentityDescription
THF1_SOLTU2.8e-10670.83Protein THYLAKOID FORMATION1, chloroplastic OS=Solanum tuberosum GN=THF1 PE=2 SV... [more]
THF1_ARATH1.2e-10170.28Protein THYLAKOID FORMATION 1, chloroplastic OS=Arabidopsis thaliana GN=THF1 PE=... [more]
THF1_ORYSJ1.1e-9767.36Protein THYLAKOID FORMATION1, chloroplastic OS=Oryza sativa subsp. japonica GN=T... [more]
THF1_ACAM19.0e-3638.36Protein Thf1 OS=Acaryochloris marina (strain MBIC 11017) GN=thf1 PE=3 SV=1[more]
THF1_TRIEI1.6e-3237.04Protein Thf1 OS=Trichodesmium erythraeum (strain IMS101) GN=thf1 PE=3 SV=1[more]
BLAST of Cp4.1LG04g03250 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K3P0_CUCSA4.1e-13689.20Uncharacterized protein OS=Cucumis sativus GN=Csa_7G046130 PE=3 SV=1[more]
A0A061E4M4_THECC5.4e-12079.51Photosystem II reaction center PSB29 protein OS=Theobroma cacao GN=TCM_007929 PE... [more]
M5WTF3_PRUPE3.5e-11978.75Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa009554mg PE=3 SV=1[more]
A0A0D2V4U5_GOSRA4.2e-11777.43Uncharacterized protein OS=Gossypium raimondii GN=B456_012G132100 PE=3 SV=1[more]
A0A0B0MJ75_GOSAR2.1e-11676.74Thylakoid formation 1, chloroplastic-like protein OS=Gossypium arboreum GN=F383_... [more]
BLAST of Cp4.1LG04g03250 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G20890.16.9e-10370.28 photosystem II reaction center PSB29 protein[more]
BLAST of Cp4.1LG04g03250 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659110691|ref|XP_008455361.1|3.0e-14090.94PREDICTED: protein THYLAKOID FORMATION1, chloroplastic [Cucumis melo][more]
gi|449438054|ref|XP_004136805.1|5.9e-13689.20PREDICTED: protein THYLAKOID FORMATION1, chloroplastic [Cucumis sativus][more]
gi|694324363|ref|XP_009353207.1|4.1e-12179.44PREDICTED: protein THYLAKOID FORMATION1, chloroplastic-like [Pyrus x bretschneid... [more]
gi|694320241|ref|XP_009350521.1|5.3e-12178.75PREDICTED: protein THYLAKOID FORMATION1, chloroplastic-like [Pyrus x bretschneid... [more]
gi|658025445|ref|XP_008348123.1|9.1e-12179.44PREDICTED: protein THYLAKOID FORMATION1, chloroplastic-like [Malus domestica][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0015979photosynthesis
GO:0010207photosystem II assembly
Vocabulary: INTERPRO
TermDefinition
IPR017499Thf1
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015996 chlorophyll catabolic process
biological_process GO:0045038 protein import into chloroplast thylakoid membrane
biological_process GO:0015979 photosynthesis
biological_process GO:0042793 transcription from plastid promoter
biological_process GO:0010027 thylakoid membrane organization
biological_process GO:0010182 sugar mediated signaling pathway
biological_process GO:0009902 chloroplast relocation
biological_process GO:0006417 regulation of translation
biological_process GO:0035304 regulation of protein dephosphorylation
biological_process GO:0006364 rRNA processing
biological_process GO:0045037 protein import into chloroplast stroma
biological_process GO:0045893 positive regulation of transcription, DNA-templated
biological_process GO:0010207 photosystem II assembly
biological_process GO:0009773 photosynthetic electron transport in photosystem I
biological_process GO:0006655 phosphatidylglycerol biosynthetic process
biological_process GO:0019288 isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway
biological_process GO:0007186 G-protein coupled receptor signaling pathway
biological_process GO:0042742 defense response to bacterium
cellular_component GO:0009941 chloroplast envelope
cellular_component GO:0009570 chloroplast stroma
cellular_component GO:0009535 chloroplast thylakoid membrane
cellular_component GO:0009528 plastid inner membrane
cellular_component GO:0009527 plastid outer membrane
cellular_component GO:0010319 stromule
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG04g03250.1Cp4.1LG04g03250.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR017499Protein Thf1HAMAPMF_01843Thf1coord: 65..273
score: 2
IPR017499Protein Thf1PFAMPF11264ThylakoidFormatcoord: 70..275
score: 1.9
IPR017499Protein Thf1TIGRFAMsTIGR03060TIGR03060coord: 67..272
score: 7.8
NoneNo IPR availableunknownCoilCoilcoord: 247..274
scor
NoneNo IPR availablePANTHERPTHR34793FAMILY NOT NAMEDcoord: 2..287
score: 6.7E
NoneNo IPR availablePANTHERPTHR34793:SF1PROTEIN THYLAKOID FORMATION 1, CHLOROPLASTICcoord: 2..287
score: 6.7E

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG04g03250Cucsa.148030Cucumber (Gy14) v1cgycpeB0395
Cp4.1LG04g03250CmaCh11G018540Cucurbita maxima (Rimu)cmacpeB148
Cp4.1LG04g03250CmaCh19G009590Cucurbita maxima (Rimu)cmacpeB537
Cp4.1LG04g03250CmoCh19G009890Cucurbita moschata (Rifu)cmocpeB492
Cp4.1LG04g03250CmoCh11G019300Cucurbita moschata (Rifu)cmocpeB126
Cp4.1LG04g03250Cla007720Watermelon (97103) v1cpewmB666
Cp4.1LG04g03250Csa7G046130Cucumber (Chinese Long) v2cpecuB690
Cp4.1LG04g03250MELO3C018772Melon (DHL92) v3.5.1cpemeB609
Cp4.1LG04g03250ClCG02G001360Watermelon (Charleston Gray)cpewcgB596
Cp4.1LG04g03250CSPI07G04230Wild cucumber (PI 183967)cpecpiB692
Cp4.1LG04g03250Lsi11G015090Bottle gourd (USVL1VR-Ls)cpelsiB526
Cp4.1LG04g03250MELO3C018772.2Melon (DHL92) v3.6.1cpemedB721
Cp4.1LG04g03250Bhi05G001568Wax gourdcpewgoB0844
Cp4.1LG04g03250CsGy7G003860Cucumber (Gy14) v2cgybcpeB964
Cp4.1LG04g03250Carg19098Silver-seed gourdcarcpeB1015
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cp4.1LG04g03250Cp4.1LG15g07800Cucurbita pepo (Zucchini)cpecpeB267
The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG04g03250Bottle gourd (USVL1VR-Ls)cpelsiB521
Cp4.1LG04g03250Melon (DHL92) v3.6.1cpemedB773
Cp4.1LG04g03250Silver-seed gourdcarcpeB0047
Cp4.1LG04g03250Silver-seed gourdcarcpeB0217
Cp4.1LG04g03250Silver-seed gourdcarcpeB1223
Cp4.1LG04g03250Cucumber (Chinese Long) v3cpecucB0855
Cp4.1LG04g03250Cucumber (Chinese Long) v3cpecucB0863
Cp4.1LG04g03250Wax gourdcpewgoB0865
Cp4.1LG04g03250Cucurbita pepo (Zucchini)cpecpeB056
Cp4.1LG04g03250Cucurbita pepo (Zucchini)cpecpeB492
Cp4.1LG04g03250Cucumber (Gy14) v1cgycpeB0329
Cp4.1LG04g03250Cucurbita maxima (Rimu)cmacpeB642
Cp4.1LG04g03250Cucurbita moschata (Rifu)cmocpeB525
Cp4.1LG04g03250Cucurbita moschata (Rifu)cmocpeB592