Carg19098 (gene) Silver-seed gourd

Overview
NameCarg19098
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionTHF1
LocationCucurbita_argyrosperma_scaffold_112 : 178025 .. 180599 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TCTCAGTTTCGTCCTCTCTTGTTTCTTTCGTTTCTTTTTTTTTTTTTCTTCTCCCAGAAAAAATCTTCGACATGAAATCCTGTTTCTCTGGAAGTTCGTAAGATTTGCAAATTTCTTCTCATTCTTCTGCAATGGCGGCTGTTAATTCCGTGTCATTCTCAACGGTTAGTCAGTTTTCTGATCGAAGGTCGCCGGTTCCGTCGGCTCGTTCACTCGCCTCGAATTTCGACGGGTTTCGTTTCCGTTCTAGTGTTTTCTATCATCATTCGGGAGTTCGAACCTCGAGTTTCAGTTCTCGCTTGGTCATTCATTGCATGTCCACCGGAACAGGTAGCTTCTGGTGATTTGTTTTTCTTACTCGCTTACTAGACTGTTCCTTTGCTAGATTATGGTAGCAGAAACGAATTGGCTTGTTTCGATGATTTCGATGTGAACTTGTGTTTTGTTTGTTCGTTAATTGTTGAGATGGATCGTTATGGACGGAAATTTAGGTTTTAAGTAACAATTAGGCTTTCAATAGTTCGGTTTGATCAATTCTAAACTTGTTCAGTATGTTGAGATTTCTCTAGTTCGATTTCTTGGTATTTGAGTGTAGAAAATGATGTGCTATTTTCGGATTTTAGATGTGACGACTGTAGCTGAGACTAAATTGAACTTTCTAAAGGCGTATAAACGACCTATCCCTAGCATATACAACTCTGTTTTGCAAGAGTTGATTGTGCAGCAGCATTTGATGAGGTATAAGAGGACGTACCGTTATGATCCTGTTTTCGCCCTCGGTTTTGTTACTGTATATGATCAGCTTATGGATGGGTACCCTAGCGATGAGGATCGGGAGGCCATTTTCCAAGCCTACATTAAGGCGCTGAATGAGGATCCAGAGCAATATAGGTTTGGCCATGTATTCCCCTTTGCTTTTACCATCCCTGATCTCTATCTCTTCTTGCCATCTAATAAATTCACTAGCCTTGTTCATAGATAGTAAACATTGTTAAGTTGAAAAAAACATGATATGATTCCACTTACAGCAAAAATACGACGATTCTTATTTCAACTTTTATCTTCTTTCTACTATTTCACATCTTAATTTGGACTTAGTTGTCTAAATGACTAGATTATTTGGTCAAATCACATGGTAATCTAATTAACGGATGTTTACTCTTTGTTCAATATCTCCAAGAGTGGAATTTTCTTCACTGGAAATTATATTCCATCCTTCGGCCATTATTCCAATAATTTCAAGAAGGTTTTTCTTCATTTTTAGTTCTACTTTCTGTTATACCGTCCAGAATTGATGCTCAAAAATTGGAAGAGTGGGCTCGGTCTCAGTCTGCAGCTTCATTGGTTGAATTTGCATCAAAAGAAGGAGAAGTTGAGAGTATTTTGAAAGACATTGCAGAACGAGCTGCGAGTAAGGGGAGTTTCAGTTACAGCCGATTTTTTGCTATTGGGCTATTTCGACTCCTCGAATTGGCAAATGCTACTGAACCCAGTATCTTGGAAAAGGTTTATTTTATCTTCCTTTTTGTGATATAGCTTTTAAGTAGATGACGATTTTGAGGTGATAGTATATCCAGCCTATTATTGCTAAATTAAACATTTACATGATAGCCAGCCCCTCCTCTCATAGTACTTTTACTTATAGATTATATTCTTTCTCTGAGTGCTGCCATTCGTAAAGTGTAATTGTGTTTCTTGCTCATTATTATCTTTTTCACTCATTAGAGAAATTGGATCCTGATGGAAGAGTGCTTAACCTTATTCAGTTCGATAGAATTAGGTTCAAGGTACTCTTTCCTGCATAAGTCTCCATTTTACTTTTCTAGGTAACACCAATCTTTTTGTAGTATTTGGTTGAAGAGAAATATGAGCTAACCATTTTTTGGAACATTCCCCTTTGCTCGGGACAATCCCACATACACAATTACAGTGTTTTTGTGGGATTTCCTTCTCCTTTGTGGAGATTGTACTGATCTTGTGGATGTAGTTTATGCTCTTTAGTAGTCTCAACTGGTCCTTTTCATTCAGTTTATTAGCTCTTGTGAAGGGAAACATACATATGTTCCTCTGCCCCCATCAACAACAGTTATCATGAACTATTGCTTTAATTGCCCATCTCTATTTAGCTTGTCTATCACCAAACATACTTTTATTTTTCTAAAACAGCTAAAGCCATGTAATGGAGATTTTACCAAGTGTTGACATCTAACACTTTGCTGCTTCTGAACAGCTCTGTGCCGCTTTAAATGTTGACAAAAAAAGTGTGGACCGAGACCTTGATGTATACCGCAACCTGCTTTCGAAGTTGGTTCAGGCGAAAGAGCTCCTAAAGGAATACGTTGATAGGTAAGAGATTTTTAAGTTCATGGTTCCTGGCCTGGTAGATTAACATACCCACAATCTGCTCTTTCACACCACCATATTTTCTTGGATTTTATGAACCCATAATCGTTTTGAAAACAATCCAGTATTTGTCAAATCCTCTACAACTCACCGTCATATCATTTATATTTACTAGATATCCGCCACTTGGCTGTGTTTTAAGATGAATGTGATGTTTTATGAAAGTTTAAAT

mRNA sequence

TCTCAGTTTCGTCCTCTCTTGTTTCTTTCGTTTCTTTTTTTTTTTTTCTTCTCCCAGAAAAAATCTTCGACATGAAATCCTGTTTCTCTGGAAGTTCGTAAGATTTGCAAATTTCTTCTCATTCTTCTGCAATGGCGGCTGTTAATTCCGTGTCATTCTCAACGGTTAGTCAGTTTTCTGATCGAAGGTCGCCGGTTCCGTCGGCTCGTTCACTCGCCTCGAATTTCGACGGGTTTCGTTTCCGTTCTAGTGTTTTCTATCATCATTCGGGAGTTCGAACCTCGAGTTTCAGTTCTCGCTTGGTCATTCATTGCATGTCCACCGGAACAGATGTGACGACTGTAGCTGAGACTAAATTGAACTTTCTAAAGGCGTATAAACGACCTATCCCTAGCATATACAACTCTGTTTTGCAAGAGTTGATTGTGCAGCAGCATTTGATGAGGTATAAGAGGACGTACCGTTATGATCCTGTTTTCGCCCTCGGTTTTGTTACTGTATATGATCAGCTTATGGATGGGTACCCTAGCGATGAGGATCGGGAGGCCATTTTCCAAGCCTACATTAAGGCGCTGAATGAGGATCCAGAGCAATATAGAATTGATGCTCAAAAATTGGAAGAGTGGGCTCGGTCTCAGTCTGCAGCTTCATTGGTTGAATTTGCATCAAAAGAAGGAGAAGTTGAGAGTATTTTGAAAGACATTGCAGAACGAGCTGCGAGTAAGGGGAGTTTCAGTTACAGCCGATTTTTTGCTATTGGGCTATTTCGACTCCTCGAATTGGCAAATGCTACTGAACCCAGTATCTTGGAAAAGGTTTATTTTATCTTCCTTTTTGTGATATAGCTTTTAAGTAGATGACGATTTTGAGGTGATAGTATATCCAGCCTATTATTGCTAAATTAAACATTTACATGATAGCCAGCCCCTCCTCTCATAGTACTTTTACTTATAGATTATATTCTTTCTCTGAGTGCTGCCATTCGTAAAGTGTAATTGTGTTTCTTGCTCATTATTATCTTTTTCACTCATTAGAGAAATTGGATCCTGATGGAAGAGTGCTTAACCTTATTCAGTTCGATAGAATTAGGTTCAAGGTACTCTTTCCTGCATAAGTCTCCATTTTACTTTTCTAGGTAACACCAATCTTTTTGTAGTATTTGGTTGAAGAGAAATATGAGCTAACCATTTTTTGGAACATTCCCCTTTGCTCGGGACAATCCCACATACACAATTACAGTGTTTTTGTGGGATTTCCTTCTCCTTTGTGGAGATTGTACTGATCTTGTGGATGTAGTTTATGCTCTTTAGTAGTCTCAACTGGTCCTTTTCATTCAGTTTATTAGCTCTTGTGAAGGGAAACATACATATGTTCCTCTGCCCCCATCAACAACAGTTATCATGAACTATTGCTTTAATTGCCCATCTCTATTTAGCTTGTCTATCACCAAACATACTTTTATTTTTCTAAAACAGCTAAAGCCATGTAATGGAGATTTTACCAAGTGTTGACATCTAACACTTTGCTGCTTCTGAACAGCTCTGTGCCGCTTTAAATGTTGACAAAAAAAGTGTGGACCGAGACCTTGATGTATACCGCAACCTGCTTTCGAAGTTGGTTCAGGCGAAAGAGCTCCTAAAGGAATACGTTGATAGGTAAGAGATTTTTAAGTTCATGGTTCCTGGCCTGGTAGATTAACATACCCACAATCTGCTCTTTCACACCACCATATTTTCTTGGATTTTATGAACCCATAATCGTTTTGAAAACAATCCAGTATTTGTCAAATCCTCTACAACTCACCGTCATATCATTTATATTTACTAGATATCCGCCACTTGGCTGTGTTTTAAGATGAATGTGATGTTTTATGAAAGTTTAAAT

Coding sequence (CDS)

ATGGCGGCTGTTAATTCCGTGTCATTCTCAACGGTTAGTCAGTTTTCTGATCGAAGGTCGCCGGTTCCGTCGGCTCGTTCACTCGCCTCGAATTTCGACGGGTTTCGTTTCCGTTCTAGTGTTTTCTATCATCATTCGGGAGTTCGAACCTCGAGTTTCAGTTCTCGCTTGGTCATTCATTGCATGTCCACCGGAACAGATGTGACGACTGTAGCTGAGACTAAATTGAACTTTCTAAAGGCGTATAAACGACCTATCCCTAGCATATACAACTCTGTTTTGCAAGAGTTGATTGTGCAGCAGCATTTGATGAGGTATAAGAGGACGTACCGTTATGATCCTGTTTTCGCCCTCGGTTTTGTTACTGTATATGATCAGCTTATGGATGGGTACCCTAGCGATGAGGATCGGGAGGCCATTTTCCAAGCCTACATTAAGGCGCTGAATGAGGATCCAGAGCAATATAGAATTGATGCTCAAAAATTGGAAGAGTGGGCTCGGTCTCAGTCTGCAGCTTCATTGGTTGAATTTGCATCAAAAGAAGGAGAAGTTGAGAGTATTTTGAAAGACATTGCAGAACGAGCTGCGAGTAAGGGGAGTTTCAGTTACAGCCGATTTTTTGCTATTGGGCTATTTCGACTCCTCGAATTGGCAAATGCTACTGAACCCAGTATCTTGGAAAAGGTTTATTTTATCTTCCTTTTTGTGATATAG

Protein sequence

MAAVNSVSFSTVSQFSDRRSPVPSARSLASNFDGFRFRSSVFYHHSGVRTSSFSSRLVIHCMSTGTDVTTVAETKLNFLKAYKRPIPSIYNSVLQELIVQQHLMRYKRTYRYDPVFALGFVTVYDQLMDGYPSDEDREAIFQAYIKALNEDPEQYRIDAQKLEEWARSQSAASLVEFASKEGEVESILKDIAERAASKGSFSYSRFFAIGLFRLLELANATEPSILEKVYFIFLFVI
Homology
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BLAST of Carg19098 vs. NCBI nr
Match: XP_022988874.1 (protein THYLAKOID FORMATION1, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 438.0 bits (1125), Expect = 2.1e-119
Identity = 227/229 (99.13%), Postives = 229/229 (100.00%), Query Frame = 0 

Query: 1   MAAVNSVSFSTVSQFSDRRSPVPSARSLASNFDGFRFRSSVFYHHSGVRTSSFSSRLVIH 60
           MAAVNSVSFSTVSQFSDRRSP+PSARSLASNFDGFRFRSSVFYHHSGVRTSSFSSRLVIH
Sbjct: 1   MAAVNSVSFSTVSQFSDRRSPIPSARSLASNFDGFRFRSSVFYHHSGVRTSSFSSRLVIH 60

Query: 61  CMSTGTDVTTVAETKLNFLKAYKRPIPSIYNSVLQELIVQQHLMRYKRTYRYDPVFALGF 120
           CMSTGTDVTTVAETKLNFLKAYKRPIPSIYNSVLQELIVQQHLMRYKRTYRYDPVFALGF
Sbjct: 61  CMSTGTDVTTVAETKLNFLKAYKRPIPSIYNSVLQELIVQQHLMRYKRTYRYDPVFALGF 120

Query: 121 VTVYDQLMDGYPSDEDREAIFQAYIKALNEDPEQYRIDAQKLEEWARSQSAASLVEFASK 180
           VTVYDQLMDGYPSDEDREAIFQAYIKALNEDPEQYRIDAQKLEEWARSQSAASLVEFASK
Sbjct: 121 VTVYDQLMDGYPSDEDREAIFQAYIKALNEDPEQYRIDAQKLEEWARSQSAASLVEFASK 180

Query: 181 EGEVESILKDIAERAASKGSFSYSRFFAIGLFRLLELANATEPSILEKV 230
           EGEVESILKDIAERAASKGSFSYSRFFAIGLFRLLELANATEPSILEK+
Sbjct: 181 EGEVESILKDIAERAASKGSFSYSRFFAIGLFRLLELANATEPSILEKL 229

[Close]
BLAST of Carg19098 vs. NCBI nr
Match: XP_022930881.1 (protein THYLAKOID FORMATION1, chloroplastic-like [Cucurbita moschata] >XP_023531402.1 protein THYLAKOID FORMATION1, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 436.0 bits (1120), Expect = 8.0e-119
Identity = 226/229 (98.69%), Postives = 228/229 (99.56%), Query Frame = 0 

Query: 1   MAAVNSVSFSTVSQFSDRRSPVPSARSLASNFDGFRFRSSVFYHHSGVRTSSFSSRLVIH 60
           MAAVNSVSFSTVSQFSDRRSPVPSARSLASNFDGFRFRSSVFYHHSGVRTSSFSSRLVIH
Sbjct: 1   MAAVNSVSFSTVSQFSDRRSPVPSARSLASNFDGFRFRSSVFYHHSGVRTSSFSSRLVIH 60

Query: 61  CMSTGTDVTTVAETKLNFLKAYKRPIPSIYNSVLQELIVQQHLMRYKRTYRYDPVFALGF 120
           CMS GTDVTTVAETKLNFLKAYKRPIPSIYNSVLQELIVQQHLMRYKRTYRYDPVFALGF
Sbjct: 61  CMSAGTDVTTVAETKLNFLKAYKRPIPSIYNSVLQELIVQQHLMRYKRTYRYDPVFALGF 120

Query: 121 VTVYDQLMDGYPSDEDREAIFQAYIKALNEDPEQYRIDAQKLEEWARSQSAASLVEFASK 180
           VTVYDQLMDGYPSDEDREAIFQAYIKALNEDPEQYRIDAQKLEEWARSQSAASLVEFASK
Sbjct: 121 VTVYDQLMDGYPSDEDREAIFQAYIKALNEDPEQYRIDAQKLEEWARSQSAASLVEFASK 180

Query: 181 EGEVESILKDIAERAASKGSFSYSRFFAIGLFRLLELANATEPSILEKV 230
           EGEVES+LKDIAERAASKGSFSYSRFFAIGLFRLLELANATEPSILEK+
Sbjct: 181 EGEVESVLKDIAERAASKGSFSYSRFFAIGLFRLLELANATEPSILEKL 229

[Close]
BLAST of Carg19098 vs. NCBI nr
Match: XP_008455361.1 (PREDICTED: protein THYLAKOID FORMATION1, chloroplastic [Cucumis melo])

HSP 1 Score: 402.9 bits (1034), Expect = 7.5e-109
Identity = 206/229 (89.96%), Postives = 222/229 (96.94%), Query Frame = 0 

Query: 1   MAAVNSVSFSTVSQFSDRRSPVPSARSLASNFDGFRFRSSVFYHHSGVRTSSFSSRLVIH 60
           MAAVNS+SFST++Q SDRR PVPS+RSL+SNFDGFRFR+S+F H+S VR S+FSSR+VIH
Sbjct: 1   MAAVNSISFSTLNQCSDRRFPVPSSRSLSSNFDGFRFRTSLFTHYSRVRPSTFSSRMVIH 60

Query: 61  CMSTGTDVTTVAETKLNFLKAYKRPIPSIYNSVLQELIVQQHLMRYKRTYRYDPVFALGF 120
           CMS GTDVTTVAETKLNFLKAYKRPIPSIYN+VLQELIVQQHLMRYKRTYRYDPVFALGF
Sbjct: 61  CMSAGTDVTTVAETKLNFLKAYKRPIPSIYNTVLQELIVQQHLMRYKRTYRYDPVFALGF 120

Query: 121 VTVYDQLMDGYPSDEDREAIFQAYIKALNEDPEQYRIDAQKLEEWARSQSAASLVEFASK 180
           VTVYDQLM+GYPSDEDREAIFQAYIKALNEDPEQYRIDAQKLEEWARSQ+AASLVEFAS+
Sbjct: 121 VTVYDQLMEGYPSDEDREAIFQAYIKALNEDPEQYRIDAQKLEEWARSQTAASLVEFASR 180

Query: 181 EGEVESILKDIAERAASKGSFSYSRFFAIGLFRLLELANATEPSILEKV 230
           EGEVESILKDIAERA SKG+FSYSRFFAIGLFRLLELANATEPSILEK+
Sbjct: 181 EGEVESILKDIAERAGSKGNFSYSRFFAIGLFRLLELANATEPSILEKL 229

[Close]
BLAST of Carg19098 vs. NCBI nr
Match: XP_022136235.1 (protein THYLAKOID FORMATION1, chloroplastic isoform X1 [Momordica charantia])

HSP 1 Score: 401.4 bits (1030), Expect = 2.2e-108
Identity = 207/229 (90.39%), Postives = 219/229 (95.63%), Query Frame = 0 

Query: 1   MAAVNSVSFSTVSQFSDRRSPVPSARSLASNFDGFRFRSSVFYHHSGVRTSSFSSRLVIH 60
           MAAVNSVSFS +SQ S+RR  VPSARSLASNFDGFRFR+SVF H+SGVRTSS+SSR+V+H
Sbjct: 1   MAAVNSVSFSALSQCSERRLLVPSARSLASNFDGFRFRTSVFCHYSGVRTSSYSSRMVVH 60

Query: 61  CMSTGTDVTTVAETKLNFLKAYKRPIPSIYNSVLQELIVQQHLMRYKRTYRYDPVFALGF 120
           CMS GTDVTTVAETK NFLK YKRPIPSIYN+VLQELIVQQHLMRYKRTYRYDPVFALGF
Sbjct: 61  CMSAGTDVTTVAETKANFLKVYKRPIPSIYNTVLQELIVQQHLMRYKRTYRYDPVFALGF 120

Query: 121 VTVYDQLMDGYPSDEDREAIFQAYIKALNEDPEQYRIDAQKLEEWARSQSAASLVEFASK 180
           VTVYDQLM+GYPSDEDREAIFQAYIKALNEDPEQYRIDA+KLEEWARSQ+AASLVEFASK
Sbjct: 121 VTVYDQLMEGYPSDEDREAIFQAYIKALNEDPEQYRIDAKKLEEWARSQTAASLVEFASK 180

Query: 181 EGEVESILKDIAERAASKGSFSYSRFFAIGLFRLLELANATEPSILEKV 230
           EGEVESILKDIAERA  KGSFSYSRFFAIGLFRLLELANATEPSILEK+
Sbjct: 181 EGEVESILKDIAERAGGKGSFSYSRFFAIGLFRLLELANATEPSILEKL 229

[Close]
BLAST of Carg19098 vs. NCBI nr
Match: XP_022969189.1 (protein THYLAKOID FORMATION1, chloroplastic-like isoform X2 [Cucurbita maxima])

HSP 1 Score: 397.9 bits (1021), Expect = 2.4e-107
Identity = 203/229 (88.65%), Postives = 221/229 (96.51%), Query Frame = 0 

Query: 1   MAAVNSVSFSTVSQFSDRRSPVPSARSLASNFDGFRFRSSVFYHHSGVRTSSFSSRLVIH 60
           MAAVNSVSFS +SQ SDRR P+PSARSLAS+FDGFRFR SVF H+SGVRTSSFSSR+VIH
Sbjct: 1   MAAVNSVSFSGLSQCSDRRLPIPSARSLASHFDGFRFRKSVFCHYSGVRTSSFSSRMVIH 60

Query: 61  CMSTGTDVTTVAETKLNFLKAYKRPIPSIYNSVLQELIVQQHLMRYKRTYRYDPVFALGF 120
           CM++GTDVTTVAETK NFLKAYKRPIPSIYN+V+QELIVQQHLMRYK+TYRYDPVFALGF
Sbjct: 61  CMASGTDVTTVAETKANFLKAYKRPIPSIYNTVVQELIVQQHLMRYKKTYRYDPVFALGF 120

Query: 121 VTVYDQLMDGYPSDEDREAIFQAYIKALNEDPEQYRIDAQKLEEWARSQSAASLVEFASK 180
           VTVYD+LM+GYPSDEDR+AIFQAYI ALNEDPEQYRIDAQKLEEWARSQ+AASLVEFAS+
Sbjct: 121 VTVYDRLMEGYPSDEDRDAIFQAYINALNEDPEQYRIDAQKLEEWARSQTAASLVEFASR 180

Query: 181 EGEVESILKDIAERAASKGSFSYSRFFAIGLFRLLELANATEPSILEKV 230
           EGEVESILKDIAERA SKG+FSYSRFFAIGLFRLLELANA+EPSILEK+
Sbjct: 181 EGEVESILKDIAERAGSKGNFSYSRFFAIGLFRLLELANASEPSILEKL 229

[Close]
BLAST of Carg19098 vs. TAIR10
Match: AT2G20890.1 (photosystem II reaction center PSB29 protein)

HSP 1 Score: 284.3 bits (726), Expect = 7.1e-77
Identity = 152/228 (66.67%), Postives = 189/228 (82.89%), Query Frame = 0 

Query: 3   AVNSVSFSTVSQFSDRRSPVPSARSLASNFDGFRFRSSVFYHHSGVRTSSFSSRLVIHCM 62
           A++S+SF  + Q SD+ S   S+R LAS       R    +    + + S +S+ +IHCM
Sbjct: 5   AISSLSFPALGQ-SDKISNFASSRPLAS-----AIRICTKFSRLSLNSRS-TSKSLIHCM 64

Query: 63  STGT-DVTTVAETKLNFLKAYKRPIPSIYNSVLQELIVQQHLMRYKRTYRYDPVFALGFV 122
           S  T DV  V+ETK  FLKAYKRPIPSIYN+VLQELIVQQHLMRYK+TYRYDPVFALGFV
Sbjct: 65  SNVTADVPPVSETKSKFLKAYKRPIPSIYNTVLQELIVQQHLMRYKKTYRYDPVFALGFV 124

Query: 123 TVYDQLMDGYPSDEDREAIFQAYIKALNEDPEQYRIDAQKLEEWARSQSAASLVEFASKE 182
           TVYDQLM+GYPSD+DR+AIF+AYI+ALNEDP+QYRIDAQK+EEWARSQ++ASLV+F+SKE
Sbjct: 125 TVYDQLMEGYPSDQDRDAIFKAYIEALNEDPKQYRIDAQKMEEWARSQTSASLVDFSSKE 184

Query: 183 GEVESILKDIAERAASKGSFSYSRFFAIGLFRLLELANATEPSILEKV 230
           G++E++LKDIA RA SK  FSYSRFFA+GLFRLLELA+AT+P++L+K+
Sbjct: 185 GDIEAVLKDIAGRAGSKEGFSYSRFFAVGLFRLLELASATDPTVLDKL 225

[Close]
BLAST of Carg19098 vs. Swiss-Prot
Match: sp|Q7XAB8|THF1_SOLTU (Protein THYLAKOID FORMATION1, chloroplastic OS=Solanum tuberosum OX=4113 GN=THF1 PE=2 SV=1)

HSP 1 Score: 301.6 bits (771), Expect = 7.7e-81
Identity = 154/230 (66.96%), Postives = 193/230 (83.91%), Query Frame = 0 

Query: 1   MAAVNSVSFSTVSQFSDRRSPVPSARSLASNFDGFRFRSSVFYHHSGVRTSSFSSRLVIH 60
           MAAV SVSFS ++Q ++R+S V S+RS+    D FRFRS+  +    VR+S+ +SR V+H
Sbjct: 1   MAAVTSVSFSAITQSAERKSSVSSSRSI----DTFRFRSNFSFDSVNVRSSNSTSRFVVH 60

Query: 61  C-MSTGTDVTTVAETKLNFLKAYKRPIPSIYNSVLQELIVQQHLMRYKRTYRYDPVFALG 120
           C  S+  D+ TVA+TKL FL AYKRPIP++YN+VLQELIVQQHL RYK++Y+YDPVFALG
Sbjct: 61  CTSSSAADLPTVADTKLKFLTAYKRPIPTVYNTVLQELIVQQHLTRYKKSYQYDPVFALG 120

Query: 121 FVTVYDQLMDGYPSDEDREAIFQAYIKALNEDPEQYRIDAQKLEEWARSQSAASLVEFAS 180
           FVTVYDQLM+GYPS+EDR AIF+AYI+AL EDPEQYR DAQKLEEWAR+Q+A +LV+F+S
Sbjct: 121 FVTVYDQLMEGYPSEEDRNAIFKAYIEALKEDPEQYRADAQKLEEWARTQNANTLVDFSS 180

Query: 181 KEGEVESILKDIAERAASKGSFSYSRFFAIGLFRLLELANATEPSILEKV 230
           KEGE+E+I KDIA+RA +K  F YSR FA+GLFRLLELAN T+P+ILEK+
Sbjct: 181 KEGEIENIFKDIAQRAGTKDGFCYSRLFAVGLFRLLELANVTDPTILEKL 226

[Close]
BLAST of Carg19098 vs. Swiss-Prot
Match: sp|Q9SKT0|THF1_ARATH (Protein THYLAKOID FORMATION 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=THF1 PE=1 SV=1)

HSP 1 Score: 284.3 bits (726), Expect = 1.3e-75
Identity = 152/228 (66.67%), Postives = 189/228 (82.89%), Query Frame = 0 

Query: 3   AVNSVSFSTVSQFSDRRSPVPSARSLASNFDGFRFRSSVFYHHSGVRTSSFSSRLVIHCM 62
           A++S+SF  + Q SD+ S   S+R LAS       R    +    + + S +S+ +IHCM
Sbjct: 5   AISSLSFPALGQ-SDKISNFASSRPLAS-----AIRICTKFSRLSLNSRS-TSKSLIHCM 64

Query: 63  STGT-DVTTVAETKLNFLKAYKRPIPSIYNSVLQELIVQQHLMRYKRTYRYDPVFALGFV 122
           S  T DV  V+ETK  FLKAYKRPIPSIYN+VLQELIVQQHLMRYK+TYRYDPVFALGFV
Sbjct: 65  SNVTADVPPVSETKSKFLKAYKRPIPSIYNTVLQELIVQQHLMRYKKTYRYDPVFALGFV 124

Query: 123 TVYDQLMDGYPSDEDREAIFQAYIKALNEDPEQYRIDAQKLEEWARSQSAASLVEFASKE 182
           TVYDQLM+GYPSD+DR+AIF+AYI+ALNEDP+QYRIDAQK+EEWARSQ++ASLV+F+SKE
Sbjct: 125 TVYDQLMEGYPSDQDRDAIFKAYIEALNEDPKQYRIDAQKMEEWARSQTSASLVDFSSKE 184

Query: 183 GEVESILKDIAERAASKGSFSYSRFFAIGLFRLLELANATEPSILEKV 230
           G++E++LKDIA RA SK  FSYSRFFA+GLFRLLELA+AT+P++L+K+
Sbjct: 185 GDIEAVLKDIAGRAGSKEGFSYSRFFAVGLFRLLELASATDPTVLDKL 225

[Close]
BLAST of Carg19098 vs. Swiss-Prot
Match: sp|Q84PB7|THF1_ORYSJ (Protein THYLAKOID FORMATION1, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=THF1 PE=2 SV=1)

HSP 1 Score: 271.9 bits (694), Expect = 6.5e-72
Identity = 148/230 (64.35%), Postives = 179/230 (77.83%), Query Frame = 0 

Query: 1   MAAVNSVSFSTVSQFSDRRSPVPSARSLASNFDGFRFRSSVFYHHSGVRTSSFSSRLVIH 60
           MAA++S+ F+ + + +D R   PS               SV             SR V+ 
Sbjct: 1   MAAISSLPFAALRRAADCR---PSTXXXXXXXXXXXXXXSV--------RPRRGSRSVVR 60

Query: 61  CMSTGTDV-TTVAETKLNFLKAYKRPIPSIYNSVLQELIVQQHLMRYKRTYRYDPVFALG 120
           C++T  DV  TVAETK+NFLK+YKRPI SIY++VLQEL+VQQHLMRYK TY+YD VFALG
Sbjct: 61  CVATAGDVPPTVAETKMNFLKSYKRPILSIYSTVLQELLVQQHLMRYKTTYQYDAVFALG 120

Query: 121 FVTVYDQLMDGYPSDEDREAIFQAYIKALNEDPEQYRIDAQKLEEWARSQSAASLVEFAS 180
           FVTVYDQLM+GYPS+EDR+AIF+AYI ALNEDPEQYR DAQK+EEWARSQ+  SLVEF+S
Sbjct: 121 FVTVYDQLMEGYPSNEDRDAIFKAYITALNEDPEQYRADAQKMEEWARSQNGNSLVEFSS 180

Query: 181 KEGEVESILKDIAERAASKGSFSYSRFFAIGLFRLLELANATEPSILEKV 230
           K+GE+E+ILKDI+ERA  KGSFSYSRFFA+GLFRLLELANATEP+IL+K+
Sbjct: 181 KDGEIEAILKDISERAQGKGSFSYSRFFAVGLFRLLELANATEPTILDKL 219

[Close]
BLAST of Carg19098 vs. Swiss-Prot
Match: sp|B0C3M8|THF1_ACAM1 (Protein Thf1 OS=Acaryochloris marina (strain MBIC 11017) OX=329726 GN=thf1 PE=3 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 2.2e-27
Identity = 68/157 (43.31%), Postives = 102/157 (64.97%), Query Frame = 0 

Query: 67  DVTTVAETKLNFLKAYKRPIPSIYNSVLQELIVQQHLMRYKRTYRYDPVFALGFVTVYDQ 126
           ++ TV++TK  F   + RP+ S+Y  V++EL+V+ HL+R    +RYDP+FALG  T +D+
Sbjct: 3   NLRTVSDTKRAFYSIHTRPVNSVYRRVVEELMVEMHLLRVNEDFRYDPIFALGVTTSFDR 62

Query: 127 LMDGYPSDEDREAIFQAYIKALNEDPEQYRIDAQKLEEWARSQSAASLVEF---ASKEG- 186
            MDGY  + D++AIF A  KA   DP Q + D Q+L E A+S+SA  ++++   A+  G 
Sbjct: 63  FMDGYQPENDKDAIFSAICKAQEADPVQMKKDGQRLTELAQSKSAQEMLDWITQAANSGG 122

Query: 187 -EVESILKDIAERAASKGSFSYSRFFAIGLFRLLELA 219
            E++  L++IA+       F YSR FAIGLF LLEL+
Sbjct: 123 DELQWQLRNIAQNP----KFKYSRLFAIGLFTLLELS 155

[Close]
BLAST of Carg19098 vs. Swiss-Prot
Match: sp|Q116P5|THF1_TRIEI (Protein Thf1 OS=Trichodesmium erythraeum (strain IMS101) OX=203124 GN=thf1 PE=3 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 5.4e-26
Identity = 65/152 (42.76%), Postives = 92/152 (60.53%), Query Frame = 0 

Query: 70  TVAETKLNFLKAYKRPIPSIYNSVLQELIVQQHLMRYKRTYRYDPVFALGFVTVYDQLMD 129
           TV++TK  F   + RPI SIYN V++EL+V+ HL+     Y Y+P +ALG VT +D+ M 
Sbjct: 6   TVSDTKKTFYHFHTRPINSIYNRVIEELLVEMHLISVNVDYSYNPFYALGVVTAFDRFMQ 65

Query: 130 GYPSDEDREAIFQAYIKALNEDPEQYRIDAQKLEEWARSQSAASLVEF--ASKEGEVESI 189
           GY   ED+ +IF A I+   EDP +YR DA+ LE+ A   SA+ ++ +   SK  +    
Sbjct: 66  GYSPQEDKTSIFNALIQGQEEDPNKYRSDAKGLEDLAGKISASDILSWICLSKNIDNTQY 125

Query: 190 LKDIAERAASKGSFSYSRFFAIGLFRLLELAN 220
           L+D     +    F YSR FAIGLF LLE+ +
Sbjct: 126 LQDDLRAISENSKFRYSRLFAIGLFTLLEIVD 157

[Close]
BLAST of Carg19098 vs. TrEMBL
Match: tr|A0A1S3C0V5|A0A1S3C0V5_CUCME (protein THYLAKOID FORMATION1, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103495547 PE=3 SV=1)

HSP 1 Score: 402.9 bits (1034), Expect = 5.0e-109
Identity = 206/229 (89.96%), Postives = 222/229 (96.94%), Query Frame = 0 

Query: 1   MAAVNSVSFSTVSQFSDRRSPVPSARSLASNFDGFRFRSSVFYHHSGVRTSSFSSRLVIH 60
           MAAVNS+SFST++Q SDRR PVPS+RSL+SNFDGFRFR+S+F H+S VR S+FSSR+VIH
Sbjct: 1   MAAVNSISFSTLNQCSDRRFPVPSSRSLSSNFDGFRFRTSLFTHYSRVRPSTFSSRMVIH 60

Query: 61  CMSTGTDVTTVAETKLNFLKAYKRPIPSIYNSVLQELIVQQHLMRYKRTYRYDPVFALGF 120
           CMS GTDVTTVAETKLNFLKAYKRPIPSIYN+VLQELIVQQHLMRYKRTYRYDPVFALGF
Sbjct: 61  CMSAGTDVTTVAETKLNFLKAYKRPIPSIYNTVLQELIVQQHLMRYKRTYRYDPVFALGF 120

Query: 121 VTVYDQLMDGYPSDEDREAIFQAYIKALNEDPEQYRIDAQKLEEWARSQSAASLVEFASK 180
           VTVYDQLM+GYPSDEDREAIFQAYIKALNEDPEQYRIDAQKLEEWARSQ+AASLVEFAS+
Sbjct: 121 VTVYDQLMEGYPSDEDREAIFQAYIKALNEDPEQYRIDAQKLEEWARSQTAASLVEFASR 180

Query: 181 EGEVESILKDIAERAASKGSFSYSRFFAIGLFRLLELANATEPSILEKV 230
           EGEVESILKDIAERA SKG+FSYSRFFAIGLFRLLELANATEPSILEK+
Sbjct: 181 EGEVESILKDIAERAGSKGNFSYSRFFAIGLFRLLELANATEPSILEKL 229

[Close]
BLAST of Carg19098 vs. TrEMBL
Match: tr|A0A0A0K3P0|A0A0A0K3P0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G046130 PE=3 SV=1)

HSP 1 Score: 388.3 bits (996), Expect = 1.3e-104
Identity = 200/229 (87.34%), Postives = 217/229 (94.76%), Query Frame = 0 

Query: 1   MAAVNSVSFSTVSQFSDRRSPVPSARSLASNFDGFRFRSSVFYHHSGVRTSSFSSRLVIH 60
           MAAVNS+SFST++Q SDRR  +PS+RS +SNF GF FR+SVF H+S VR S+FSSR+VIH
Sbjct: 1   MAAVNSISFSTLNQCSDRRLLLPSSRSHSSNFHGFPFRTSVFTHYSRVRASTFSSRMVIH 60

Query: 61  CMSTGTDVTTVAETKLNFLKAYKRPIPSIYNSVLQELIVQQHLMRYKRTYRYDPVFALGF 120
           CMS GTDVTTVAETKLNFLKAYKRPIPSIYN+VLQELIVQQHLMRYKRTYRYDPVFALGF
Sbjct: 61  CMSAGTDVTTVAETKLNFLKAYKRPIPSIYNTVLQELIVQQHLMRYKRTYRYDPVFALGF 120

Query: 121 VTVYDQLMDGYPSDEDREAIFQAYIKALNEDPEQYRIDAQKLEEWARSQSAASLVEFASK 180
           VTVYDQLM+GYPSDEDREAIFQAYIKALNEDPEQYRIDA+K EEWARSQ+AASLVEFAS+
Sbjct: 121 VTVYDQLMEGYPSDEDREAIFQAYIKALNEDPEQYRIDAKKFEEWARSQTAASLVEFASR 180

Query: 181 EGEVESILKDIAERAASKGSFSYSRFFAIGLFRLLELANATEPSILEKV 230
           EGEVESILKDIAERA SKG+FSYSRFFAIGLFRLLELANATEPSILEK+
Sbjct: 181 EGEVESILKDIAERAGSKGNFSYSRFFAIGLFRLLELANATEPSILEKL 229

[Close]
BLAST of Carg19098 vs. TrEMBL
Match: tr|A0A2I4G5E1|A0A2I4G5E1_9ROSI (protein THYLAKOID FORMATION1, chloroplastic-like OS=Juglans regia OX=51240 GN=LOC109004866 PE=3 SV=1)

HSP 1 Score: 354.4 bits (908), Expect = 2.0e-94
Identity = 179/229 (78.17%), Postives = 209/229 (91.27%), Query Frame = 0 

Query: 1   MAAVNSVSFSTVSQFSDRRSPVPSARSLASNFDGFRFRSSVFYHHSGVRTSSFSSRLVIH 60
           MA+V+S+SFS  SQ+ +RR+ V S R+L +NF+GFRFR+S+  H  G+R +S SSRL IH
Sbjct: 1   MASVSSLSFSVPSQYPERRAIVSSTRTLPTNFEGFRFRTSLSCHCGGIR-ASVSSRLAIH 60

Query: 61  CMSTGTDVTTVAETKLNFLKAYKRPIPSIYNSVLQELIVQQHLMRYKRTYRYDPVFALGF 120
           CMST T++ TV+ETKLNFLK+YKRPIP++YN+V+QELIVQQHLM+YKRTYRYDPVFALGF
Sbjct: 61  CMSTSTELPTVSETKLNFLKSYKRPIPTVYNNVIQELIVQQHLMKYKRTYRYDPVFALGF 120

Query: 121 VTVYDQLMDGYPSDEDREAIFQAYIKALNEDPEQYRIDAQKLEEWARSQSAASLVEFASK 180
           VTVYDQLMDGYPSDEDR+AIFQAYIKAL EDPEQYRIDAQKLEEWAR+Q+A+SLVEFAS+
Sbjct: 121 VTVYDQLMDGYPSDEDRDAIFQAYIKALKEDPEQYRIDAQKLEEWARAQTASSLVEFASR 180

Query: 181 EGEVESILKDIAERAASKGSFSYSRFFAIGLFRLLELANATEPSILEKV 230
           EGEVE ILKDIAERA  KGSFSYSRFFA+GLFRLLELANATEP+ILEK+
Sbjct: 181 EGEVEGILKDIAERAGGKGSFSYSRFFAVGLFRLLELANATEPAILEKL 228

[Close]
BLAST of Carg19098 vs. TrEMBL
Match: tr|A0A2P4HY67|A0A2P4HY67_QUESU (Protein thylakoid formation1, chloroplastic OS=Quercus suber OX=58331 GN=CFP56_34371 PE=3 SV=1)

HSP 1 Score: 347.1 bits (889), Expect = 3.2e-92
Identity = 175/229 (76.42%), Postives = 204/229 (89.08%), Query Frame = 0 

Query: 1   MAAVNSVSFSTVSQFSDRRSPVPSARSLASNFDGFRFRSSVFYHHSGVRTSSFSSRLVIH 60
           MAA+ S+SFS VSQ S+R++ V SAR+LASN + FRFR++   H+ GVR+S   S +VIH
Sbjct: 1   MAAIASLSFSAVSQCSERKATVQSARTLASNSEAFRFRTNFSCHYVGVRSSGSISPMVIH 60

Query: 61  CMSTGTDVTTVAETKLNFLKAYKRPIPSIYNSVLQELIVQQHLMRYKRTYRYDPVFALGF 120
           CMS  TDV TV+ETKLNFL  YKRPIP++YN+VLQELIVQQHLMRYKRTYRYDPVFALGF
Sbjct: 61  CMSVSTDVPTVSETKLNFLNTYKRPIPTVYNTVLQELIVQQHLMRYKRTYRYDPVFALGF 120

Query: 121 VTVYDQLMDGYPSDEDREAIFQAYIKALNEDPEQYRIDAQKLEEWARSQSAASLVEFASK 180
           VTVYDQLM+GYPSDEDR+AIFQAYIKAL EDP+QYRIDAQKLEEWAR+Q+A+SLVEF S+
Sbjct: 121 VTVYDQLMEGYPSDEDRDAIFQAYIKALKEDPQQYRIDAQKLEEWARAQTASSLVEFTSR 180

Query: 181 EGEVESILKDIAERAASKGSFSYSRFFAIGLFRLLELANATEPSILEKV 230
           EG+VE +L+DIAERA  KGSFSYSRFFA+GLFRLLELANATEP+ILEK+
Sbjct: 181 EGDVEGMLQDIAERAGGKGSFSYSRFFAVGLFRLLELANATEPTILEKL 229

[Close]
BLAST of Carg19098 vs. TrEMBL
Match: tr|A0A2C9UU33|A0A2C9UU33_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_13G152400 PE=4 SV=1)

HSP 1 Score: 346.7 bits (888), Expect = 4.2e-92
Identity = 183/235 (77.87%), Postives = 206/235 (87.66%), Query Frame = 0 

Query: 1   MAAVNSVSFSTVSQFS-DRRSPVPSARSLASNFDGFRFRSSVFYHHSGVRTSSFSSRLVI 60
           MAAV SVSFS ++Q S DR++   S RS ASNFD FRFRSS   H++GVR S+ +SR+VI
Sbjct: 1   MAAVTSVSFSAIAQSSNDRKAFASSIRSFASNFDTFRFRSSFSCHYTGVRASNSTSRMVI 60

Query: 61  HCMSTGTDVTTVAETKLNFLKAYKRPIPSIYNSVLQELIVQQHLMRYKRTYRYDPVFALG 120
           HCMST TDV TV+ETK NFLKAY +PIPSIYN+VLQELIVQQHLMRYKRTYRYDPVFALG
Sbjct: 61  HCMSTATDVPTVSETKFNFLKAYNKPIPSIYNTVLQELIVQQHLMRYKRTYRYDPVFALG 120

Query: 121 FVTVYDQLMDGYPSDEDREAIFQAYIKALNEDPEQYRIDAQKLEEWARSQSAASLVEFAS 180
           FVTVYDQLM+GYPSDEDR+AIFQAYI AL EDPEQYRIDA++LEEWARSQ+A SLV+F+S
Sbjct: 121 FVTVYDQLMEGYPSDEDRDAIFQAYINALKEDPEQYRIDAKRLEEWARSQTATSLVDFSS 180

Query: 181 KEGEVESILKDIAERAASKGSFSYSRFFAIGLFRLLELANATEPSILEKVYFIFL 235
           +EGEVE  LKDIAERA + GSFSYSRFFAIGLFRLLEL+NATEP+ILEKV F  L
Sbjct: 181 REGEVEGTLKDIAERAGN-GSFSYSRFFAIGLFRLLELSNATEPTILEKVCFALL 234

The following BLAST results are available for this feature:
BLAST of Carg19098 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022988874.12.1e-11999.13protein THYLAKOID FORMATION1, chloroplastic-like [Cucurbita maxima][more]
XP_022930881.18.0e-11998.69protein THYLAKOID FORMATION1, chloroplastic-like [Cucurbita moschata] >XP_023531... [more]
XP_008455361.17.5e-10989.96PREDICTED: protein THYLAKOID FORMATION1, chloroplastic [Cucumis melo][more]
XP_022136235.12.2e-10890.39protein THYLAKOID FORMATION1, chloroplastic isoform X1 [Momordica charantia][more]
XP_022969189.12.4e-10788.65protein THYLAKOID FORMATION1, chloroplastic-like isoform X2 [Cucurbita maxima][more]
BLAST of Carg19098 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G20890.17.1e-7766.67photosystem II reaction center PSB29 protein[more]
BLAST of Carg19098 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q7XAB8|THF1_SOLTU7.7e-8166.96Protein THYLAKOID FORMATION1, chloroplastic OS=Solanum tuberosum OX=4113 GN=THF1... [more]
sp|Q9SKT0|THF1_ARATH1.3e-7566.67Protein THYLAKOID FORMATION 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=... [more]
sp|Q84PB7|THF1_ORYSJ6.5e-7264.35Protein THYLAKOID FORMATION1, chloroplastic OS=Oryza sativa subsp. japonica OX=3... [more]
sp|B0C3M8|THF1_ACAM12.2e-2743.31Protein Thf1 OS=Acaryochloris marina (strain MBIC 11017) OX=329726 GN=thf1 PE=3 ... [more]
sp|Q116P5|THF1_TRIEI5.4e-2642.76Protein Thf1 OS=Trichodesmium erythraeum (strain IMS101) OX=203124 GN=thf1 PE=3 ... [more]
BLAST of Carg19098 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3C0V5|A0A1S3C0V5_CUCME5.0e-10989.96protein THYLAKOID FORMATION1, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103495... [more]
tr|A0A0A0K3P0|A0A0A0K3P0_CUCSA1.3e-10487.34Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G046130 PE=3 SV=1[more]
tr|A0A2I4G5E1|A0A2I4G5E1_9ROSI2.0e-9478.17protein THYLAKOID FORMATION1, chloroplastic-like OS=Juglans regia OX=51240 GN=LO... [more]
tr|A0A2P4HY67|A0A2P4HY67_QUESU3.2e-9276.42Protein thylakoid formation1, chloroplastic OS=Quercus suber OX=58331 GN=CFP56_3... [more]
tr|A0A2C9UU33|A0A2C9UU33_MANES4.2e-9277.87Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_13G152400 PE=4 SV=... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0010207photosystem II assembly
GO:0015979photosynthesis
Vocabulary: INTERPRO
TermDefinition
IPR017499Thf1
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0010207 photosystem II assembly
biological_process GO:0015979 photosynthesis
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg19098-RACarg19098-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR017499Protein Thf1PFAMPF11264ThylakoidFormatcoord: 70..221
e-value: 1.1E-58
score: 198.4
IPR017499Protein Thf1PANTHERPTHR34793FAMILY NOT NAMEDcoord: 1..229
NoneNo IPR availablePANTHERPTHR34793:SF5SUBFAMILY NOT NAMEDcoord: 1..229

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Carg19098Cla007720Watermelon (97103) v1carwmB0718
Carg19098Csa7G046130Cucumber (Chinese Long) v2carcuB0739
Carg19098MELO3C018772Melon (DHL92) v3.5.1carmeB0715
Carg19098ClCG02G001360Watermelon (Charleston Gray)carwcgB0696
Carg19098CSPI07G04230Wild cucumber (PI 183967)carcpiB0755
Carg19098Cucsa.148030Cucumber (Gy14) v1carcgyB0810
Carg19098CmaCh19G009590Cucurbita maxima (Rimu)carcmaB1008
Carg19098CmaCh11G018540Cucurbita maxima (Rimu)carcmaB1006
Carg19098CmoCh19G009890Cucurbita moschata (Rifu)carcmoB0981
Carg19098CmoCh11G019300Cucurbita moschata (Rifu)carcmoB0979
Carg19098Lsi11G015090Bottle gourd (USVL1VR-Ls)carlsiB659
Carg19098Cp4.1LG15g07800Cucurbita pepo (Zucchini)carcpeB1013
Carg19098Cp4.1LG04g03250Cucurbita pepo (Zucchini)carcpeB1015
Carg19098CsGy7G003860Cucumber (Gy14) v2carcgybB0717
Carg19098MELO3C018772.2Melon (DHL92) v3.6.1carmedB0728
Carg19098CsaV3_7G004070Cucumber (Chinese Long) v3carcucB0758
Carg19098Cla97C02G027820Watermelon (97103) v2carwmbB0752
Carg19098Bhi05G001568Wax gourdcarwgoB0847
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Carg19098Wax gourdcarwgoB0849
Carg19098Silver-seed gourdcarcarB035
Carg19098Silver-seed gourdcarcarB176
Carg19098Silver-seed gourdcarcarB590
Carg19098Cucumber (Gy14) v1carcgyB0809
Carg19098Cucurbita maxima (Rimu)carcmaB1010
Carg19098Cucurbita moschata (Rifu)carcmoB0980
Carg19098Cucurbita moschata (Rifu)carcmoB0983
Carg19098Cucurbita pepo (Zucchini)carcpeB1012
Carg19098Cucurbita pepo (Zucchini)carcpeB1016
Carg19098Bottle gourd (USVL1VR-Ls)carlsiB657