Lsi11G015090 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi11G015090
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Thf1-like protein
Location	chr11 : 23555771 .. 23558670 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTCAGTCTCACCCTCTCTTCTTTCCTTTTTTCCCAGAAAATTTCTTCGAATTTCATTTTCTATACGTCTTTCTCCCTCTCTTCTTCGATATGAAATCCATTTTCTCCAAAAATTCTTAAGCTTCGCAGATTTTTCCTCATTCTTCTTCAATGGCGGCTGTTAATTCCATTTCATTCTCAACATTGAACCAATGTTCTGATAGAAGATTGCCGGTTCCGTCCGCTCGTTCACTCGCCTCCAATTTCGACGGCTTTCGTTTTCGTACGAGCGTTTTCAGTCATTATTCCCGAGTTCGAGCATCCACCTTCAGTTCTCGCATGGTCATTCATTGCATGTCCGCCGGAACAGGTAGCTTCTGGTGATCTGTTTTTCCTTACTCGCTTATTAGACTATTCCGTTGCCAGAAGAAAACAGCCTCGTTTCTCTGATTCCGATTGAGTTTGCGAATCTCTGTTCTGTTTTTAGTTTTCCTCATTTGTAGAGATGGAATGTTATGGAGGGAATTAGAAGTTTTAAGTAACAATTAAGCTTTCAATAATTCAGTTGGATCAGTTCTATACTTGTGTAGTGTGTTGAGATTTCTCTAGTTCGTTTTCTTGCTACTTAGGTTTAGAAATTGATGCGTTATTTTGACGGCTCAGATGTGACAACTGTAGCCGAGACAAAATTGAACTTCCTCAAGGCGTATAAACGGCCTATCCCTAGCATTTACAACACTGTTCTGCAAGAATTGATTGTTCAACAGCATTTGATGAGGTATAAGAGGACATACCGTTATGACCCTGTTTTCGCTCTTGGTTTTGTTACTGTATATGATCAGCTTATGGACGGGTACCCTAGCGATGAGGATCGTGATGCCATCTTCCAAGCATACATTGAGGCATTGAATGAGGATCCAGAGCAATATAGGTTTGGCCATGTATTCCCCTTTGCTTTTACCATCCCTGATCTCTATCTATTCCTGTCAGCTAAAAACTTCCGTAGCCTTATTTATAGGTAGACACTGTTAAGTTAGAAAATCATAAACGTGAGTCCCTTTAGCTGTCTAAACGACTAAATTGTACCTGGTAATCAAATTTACGAATGTTAATTCTTTGTTCAATAACTCCAAGAGTGTAATATTCTTCACTGGAAATTATTTCCTACCTTCGACCATTTTTCCAATAATTTCAAGAAGGGTTTTTCTTTATTTTATGTAATATTTTCTGTTATACCGTCCAGAATTGATGCTAAAAAATTGGAAGAGTGGGCTCGGTCTCAGACTGCAGCTTCATTGGTTGAGTTTGCATCAAGAGAAGGAGAAGTTGAGAGTACTTTGAAGGACATTGCAGAACGAGCAGGGAGTAAAGGGAATTTTAGTTACAGCCGATTTTTTGCTATTGGACTTTTTCGACTCCTTGAATTGGCAAATGCTACTGAACCCAGTATCCTGGAAAAGGTTTATGTCATTTTCCTATTTGTGAATATAGCTTTTAAGTTGATGAAGATTTTGATTTGACAGTTTATCGACCTTCTTATTGCTAAATTAAATGGCAGCCAGCCCTTTTCATAGGACTTTTACGGATAAATTATATTATTTCTCTGAGTGCTGCCATTTATAAAGTATAATAGCCTTTCTGGTTCATTAGTTATCTTTCTACTCGTTAGAGAAATTGGATCTTGATGGAATATTGCCTAACCTTATTCTGTTCGAGACTCGAGAAAATTAGGTTCAAAGGCTTCTTTTCTGCATAAGGCTGCATTTTATTTTCTACCTAACTATTTTTTGGAACATTTGCCCCTCTCCCCTTCCACCCTCGCCCCCAACCTAAACCTAACACACACACACGCACACACTTACAGAGCTTTTGTGGTATTTCCTTTCTTTCTTGTGAAAACCAACTCCATTTAGTGAGACAATCACTGAAGATATAATAGTTTTGATTTTTAAAACAGCTAAAGCTATATATTCGAACAGTTTTTTAAATCAGCTGAATTCATGTGATGGAGATTTGATCCGAGTTTTGGCATCTAACTTCTTACCACTTCTTAACAGCTCTGTGCCGCTTTAAACATAGACAAAAAAGGTGTAGACCGAGACCTTGATGTATACCGCAACCTGCTTTCAAAGTTGGTTCAAGCGAAAGAGCTCCTAAAGGAATACGTCGATAGGTAAAAACTGTTAATTTCCTGGTTCTAAGCATGATAGATTAATATGCTCTTTCAAACCATCATTTTTTCACAGACTTTATGAATATAATCGATTTGAAAACTGTCAATCTTGCATGTGTCAAATTTTCTGCAAGTCAATGTCATAGCATTTATATTCATTGGATATCCACCACATGTTTCCCATCCTTAATTCTACATTTTGCCTTTTCGTATATGGATATTGGCTGAGGTTTAAATGAGGTAGAATTGGGTGGATCATGGTGCTTCTAAGAGTCAGATTTTAAGGATAAAAGTTTGTATGATTAACCAGTGGTTTTCAATTCTATAGAGAGAAGAAGAAAAGAGATGAGAGGACTGGATCACAGACAGCTAATGAGGCCATAACTAAATGCTTGGGAGAATACAGCATGCAGACTGGTTTATAAAAAGGTGATTGGAGCATTTCCTAATTTGAGATAGACTTGAGAGTTATAGCAATATTCTAAATACCTGATAGATATGCATCTGTAATGTATTGTTGGGTCTCATGCATTTGGTAAATTTTGTATTCAGCCAGGCAGAACCTTTATTTCTCATTTGACGTGACCACCTCAAGCTATTTTTTAATCATTTGTATTACATATTTTGAGTGCAATTGTCAATACAAATGCTTTCGCACTCTGTGCAGTAATCTATTTGACCATCTGCTTTTGTATGTGCAATCATTTATGGGTTATTATGATATTTCACCCTTTGCTTTATGGTCTAAA

mRNA sequence

CTCAGTCTCACCCTCTCTTCTTTCCTTTTTTCCCAGAAAATTTCTTCGAATTTCATTTTCTATACGTCTTTCTCCCTCTCTTCTTCGATATGAAATCCATTTTCTCCAAAAATTCTTAAGCTTCGCAGATTTTTCCTCATTCTTCTTCAATGGCGGCTGTTAATTCCATTTCATTCTCAACATTGAACCAATGTTCTGATAGAAGATTGCCGGTTCCGTCCGCTCGTTCACTCGCCTCCAATTTCGACGGCTTTCGTTTTCGTACGAGCGTTTTCAGTCATTATTCCCGAGTTCGAGCATCCACCTTCAGTTCTCGCATGGTCATTCATTGCATGTCCGCCGGAACAGATGTGACAACTGTAGCCGAGACAAAATTGAACTTCCTCAAGGCGTATAAACGGCCTATCCCTAGCATTTACAACACTGTTCTGCAAGAATTGATTGTTCAACAGCATTTGATGAGGTATAAGAGGACATACCGTTATGACCCTGTTTTCGCTCTTGGTTTTGTTACTGTATATGATCAGCTTATGGACGGGTACCCTAGCGATGAGGATCGTGATGCCATCTTCCAAGCATACATTGAGGCATTGAATGAGGATCCAGAGCAATATAGAATTGATGCTAAAAAATTGGAAGAGTGGGCTCGGTCTCAGACTGCAGCTTCATTGGTTGAGTTTGCATCAAGAGAAGGAGAAGTTGAGAGTACTTTGAAGGACATTGCAGAACGAGCAGGGAGTAAAGGGAATTTTAGTTACAGCCGATTTTTTGCTATTGGACTTTTTCGACTCCTTGAATTGGCAAATGCTACTGAACCCAGTATCCTGGAAAAGCTCTGTGCCGCTTTAAACATAGACAAAAAAGGTGTAGACCGAGACCTTGATGTATACCGCAACCTGCTTTCAAAGTTGGTTCAAGCGAAAGAGCTCCTAAAGGAATACGTCGATAGAGAGAAGAAGAAAAGAGATGAGAGGACTGGATCACAGACAGCTAATGAGGCCATAACTAAATGCTTGGGAGAATACAGCATGCAGACTGGTTTATAAAAAGGTGATTGGAGCATTTCCTAATTTGAGATAGACTTGAGAGTTATAGCAATATTCTAAATACCTGATAGATATGCATCTGTAATGTATTGTTGGGTCTCATGCATTTGGTAAATTTTGTATTCAGCCAGGCAGAACCTTTATTTCTCATTTGACGTGACCACCTCAAGCTATTTTTTAATCATTTGTATTACATATTTTGAGTGCAATTGTCAATACAAATGCTTTCGCACTCTGTGCAGTAATCTATTTGACCATCTGCTTTTGTATGTGCAATCATTTATGGGTTATTATGATATTTCACCCTTTGCTTTATGGTCTAAA

Coding sequence (CDS)

ATGGCGGCTGTTAATTCCATTTCATTCTCAACATTGAACCAATGTTCTGATAGAAGATTGCCGGTTCCGTCCGCTCGTTCACTCGCCTCCAATTTCGACGGCTTTCGTTTTCGTACGAGCGTTTTCAGTCATTATTCCCGAGTTCGAGCATCCACCTTCAGTTCTCGCATGGTCATTCATTGCATGTCCGCCGGAACAGATGTGACAACTGTAGCCGAGACAAAATTGAACTTCCTCAAGGCGTATAAACGGCCTATCCCTAGCATTTACAACACTGTTCTGCAAGAATTGATTGTTCAACAGCATTTGATGAGGTATAAGAGGACATACCGTTATGACCCTGTTTTCGCTCTTGGTTTTGTTACTGTATATGATCAGCTTATGGACGGGTACCCTAGCGATGAGGATCGTGATGCCATCTTCCAAGCATACATTGAGGCATTGAATGAGGATCCAGAGCAATATAGAATTGATGCTAAAAAATTGGAAGAGTGGGCTCGGTCTCAGACTGCAGCTTCATTGGTTGAGTTTGCATCAAGAGAAGGAGAAGTTGAGAGTACTTTGAAGGACATTGCAGAACGAGCAGGGAGTAAAGGGAATTTTAGTTACAGCCGATTTTTTGCTATTGGACTTTTTCGACTCCTTGAATTGGCAAATGCTACTGAACCCAGTATCCTGGAAAAGCTCTGTGCCGCTTTAAACATAGACAAAAAAGGTGTAGACCGAGACCTTGATGTATACCGCAACCTGCTTTCAAAGTTGGTTCAAGCGAAAGAGCTCCTAAAGGAATACGTCGATAGAGAGAAGAAGAAAAGAGATGAGAGGACTGGATCACAGACAGCTAATGAGGCCATAACTAAATGCTTGGGAGAATACAGCATGCAGACTGGTTTATAA

Protein sequence

MAAVNSISFSTLNQCSDRRLPVPSARSLASNFDGFRFRTSVFSHYSRVRASTFSSRMVIHCMSAGTDVTTVAETKLNFLKAYKRPIPSIYNTVLQELIVQQHLMRYKRTYRYDPVFALGFVTVYDQLMDGYPSDEDRDAIFQAYIEALNEDPEQYRIDAKKLEEWARSQTAASLVEFASREGEVESTLKDIAERAGSKGNFSYSRFFAIGLFRLLELANATEPSILEKLCAALNIDKKGVDRDLDVYRNLLSKLVQAKELLKEYVDREKKKRDERTGSQTANEAITKCLGEYSMQTGL

Homology

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BLAST of Lsi11G015090 vs. Swiss-Prot
Match: THF1_SOLTU (Protein THYLAKOID FORMATION1, chloroplastic OS=Solanum tuberosum GN=THF1 PE=2 SV=1)

HSP 1 Score: 394.0 bits (1011), Expect = 1.4e-108
Identity = 203/293 (69.28%), Postives = 246/293 (83.96%), Query Frame = 1


Query: 1   MAAVNSISFSTLNQCSDRRLPVPSARSLASNFDGFRFRTSVFSHYSRVRASTFSSRMVIH 60
           MAAV S+SFS + Q ++R+  V S+RS+    D FRFR++       VR+S  +SR V+H
Sbjct: 1   MAAVTSVSFSAITQSAERKSSVSSSRSI----DTFRFRSNFSFDSVNVRSSNSTSRFVVH 60

Query: 61  CMSAGT-DVTTVAETKLNFLKAYKRPIPSIYNTVLQELIVQQHLMRYKRTYRYDPVFALG 120
           C S+   D+ TVA+TKL FL AYKRPIP++YNTVLQELIVQQHL RYK++Y+YDPVFALG
Sbjct: 61  CTSSSAADLPTVADTKLKFLTAYKRPIPTVYNTVLQELIVQQHLTRYKKSYQYDPVFALG 120

Query: 121 FVTVYDQLMDGYPSDEDRDAIFQAYIEALNEDPEQYRIDAKKLEEWARSQTAASLVEFAS 180
           FVTVYDQLM+GYPS+EDR+AIF+AYIEAL EDPEQYR DA+KLEEWAR+Q A +LV+F+S
Sbjct: 121 FVTVYDQLMEGYPSEEDRNAIFKAYIEALKEDPEQYRADAQKLEEWARTQNANTLVDFSS 180

Query: 181 REGEVESTLKDIAERAGSKGNFSYSRFFAIGLFRLLELANATEPSILEKLCAALNIDKKG 240
           +EGE+E+  KDIA+RAG+K  F YSR FA+GLFRLLELAN T+P+ILEKLCAALN++KK 
Sbjct: 181 KEGEIENIFKDIAQRAGTKDGFCYSRLFAVGLFRLLELANVTDPTILEKLCAALNVNKKS 240

Query: 241 VDRDLDVYRNLLSKLVQAKELLKEYVDREKKKRDERTGSQTANEAITKCLGEY 293
           VDRDLDVYRNLLSKLVQAKELLKEYV+REKKKR ER  +Q ANE +TKCLG+Y
Sbjct: 241 VDRDLDVYRNLLSKLVQAKELLKEYVEREKKKRGERE-TQKANETVTKCLGDY 288

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BLAST of Lsi11G015090 vs. Swiss-Prot
Match: THF1_ARATH (Protein THYLAKOID FORMATION 1, chloroplastic OS=Arabidopsis thaliana GN=THF1 PE=1 SV=1)

HSP 1 Score: 387.9 bits (995), Expect = 1.0e-106
Identity = 211/290 (72.76%), Postives = 245/290 (84.48%), Query Frame = 1


Query: 3   AVNSISFSTLNQCSDRRLPVPSARSLASNFDGFRFRTSVFSHYSRVRASTFSSRMVIHCM 62
           A++S+SF  L Q SD+     S+R LAS     R  T  FS  S    ST  S+ +IHCM
Sbjct: 5   AISSLSFPALGQ-SDKISNFASSRPLAS---AIRICTK-FSRLSLNSRST--SKSLIHCM 64

Query: 63  SAGT-DVTTVAETKLNFLKAYKRPIPSIYNTVLQELIVQQHLMRYKRTYRYDPVFALGFV 122
           S  T DV  V+ETK  FLKAYKRPIPSIYNTVLQELIVQQHLMRYK+TYRYDPVFALGFV
Sbjct: 65  SNVTADVPPVSETKSKFLKAYKRPIPSIYNTVLQELIVQQHLMRYKKTYRYDPVFALGFV 124

Query: 123 TVYDQLMDGYPSDEDRDAIFQAYIEALNEDPEQYRIDAKKLEEWARSQTAASLVEFASRE 182
           TVYDQLM+GYPSD+DRDAIF+AYIEALNEDP+QYRIDA+K+EEWARSQT+ASLV+F+S+E
Sbjct: 125 TVYDQLMEGYPSDQDRDAIFKAYIEALNEDPKQYRIDAQKMEEWARSQTSASLVDFSSKE 184

Query: 183 GEVESTLKDIAERAGSKGNFSYSRFFAIGLFRLLELANATEPSILEKLCAALNIDKKGVD 242
           G++E+ LKDIA RAGSK  FSYSRFFA+GLFRLLELA+AT+P++L+KLCA+LNI+KK VD
Sbjct: 185 GDIEAVLKDIAGRAGSKEGFSYSRFFAVGLFRLLELASATDPTVLDKLCASLNINKKSVD 244

Query: 243 RDLDVYRNLLSKLVQAKELLKEYVDREKKKRDERTGSQTANEAITKCLGE 292
           RDLDVYRNLLSKLVQAKELLKEYV+REKKK+ ER  SQ ANE I+KCLG+
Sbjct: 245 RDLDVYRNLLSKLVQAKELLKEYVEREKKKQGERAQSQKANETISKCLGD 287

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BLAST of Lsi11G015090 vs. Swiss-Prot
Match: THF1_ORYSJ (Protein THYLAKOID FORMATION1, chloroplastic OS=Oryza sativa subsp. japonica GN=THF1 PE=2 SV=1)

HSP 1 Score: 362.5 bits (929), Expect = 4.6e-99
Identity = 195/288 (67.71%), Postives = 235/288 (81.60%), Query Frame = 1


Query: 1   MAAVNSISFSTLNQCSDRRLPVPSARSLASNFDGFRFRTSVFSHYSRVRASTFSSRMVIH 60
           MAA++S+ F+ L + +D R   PS  + A+         SV     R R     SR V+ 
Sbjct: 1   MAAISSLPFAALRRAADCR---PSTAAAAAGAGAGAVVLSV-----RPRRG---SRSVVR 60

Query: 61  CMSAGTDVT-TVAETKLNFLKAYKRPIPSIYNTVLQELIVQQHLMRYKRTYRYDPVFALG 120
           C++   DV  TVAETK+NFLK+YKRPI SIY+TVLQEL+VQQHLMRYK TY+YD VFALG
Sbjct: 61  CVATAGDVPPTVAETKMNFLKSYKRPILSIYSTVLQELLVQQHLMRYKTTYQYDAVFALG 120

Query: 121 FVTVYDQLMDGYPSDEDRDAIFQAYIEALNEDPEQYRIDAKKLEEWARSQTAASLVEFAS 180
           FVTVYDQLM+GYPS+EDRDAIF+AYI ALNEDPEQYR DA+K+EEWARSQ   SLVEF+S
Sbjct: 121 FVTVYDQLMEGYPSNEDRDAIFKAYITALNEDPEQYRADAQKMEEWARSQNGNSLVEFSS 180

Query: 181 REGEVESTLKDIAERAGSKGNFSYSRFFAIGLFRLLELANATEPSILEKLCAALNIDKKG 240
           ++GE+E+ LKDI+ERA  KG+FSYSRFFA+GLFRLLELANATEP+IL+KLCAALNI+K+ 
Sbjct: 181 KDGEIEAILKDISERAQGKGSFSYSRFFAVGLFRLLELANATEPTILDKLCAALNINKRS 240

Query: 241 VDRDLDVYRNLLSKLVQAKELLKEYVDREKKKRDERTGSQTANEAITK 288
           VDRDLDVYRN+LSKLVQAKELLKEYV+REKKKR+ER+ +  +NEA+TK
Sbjct: 241 VDRDLDVYRNILSKLVQAKELLKEYVEREKKKREERSETPKSNEAVTK 277

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BLAST of Lsi11G015090 vs. Swiss-Prot
Match: THF1_ACAM1 (Protein Thf1 OS=Acaryochloris marina (strain MBIC 11017) GN=thf1 PE=3 SV=1)

HSP 1 Score: 151.4 bits (381), Expect = 1.6e-35
Identity = 83/219 (37.90%), Postives = 136/219 (62.10%), Query Frame = 1


Query: 67  DVTTVAETKLNFLKAYKRPIPSIYNTVLQELIVQQHLMRYKRTYRYDPVFALGFVTVYDQ 126
           ++ TV++TK  F   + RP+ S+Y  V++EL+V+ HL+R    +RYDP+FALG  T +D+
Sbjct: 3   NLRTVSDTKRAFYSIHTRPVNSVYRRVVEELMVEMHLLRVNEDFRYDPIFALGVTTSFDR 62

Query: 127 LMDGYPSDEDRDAIFQAYIEALNEDPEQYRIDAKKLEEWARSQTAASLVEF---ASREG- 186
            MDGY  + D+DAIF A  +A   DP Q + D ++L E A+S++A  ++++   A+  G 
Sbjct: 63  FMDGYQPENDKDAIFSAICKAQEADPVQMKKDGQRLTELAQSKSAQEMLDWITQAANSGG 122

Query: 187 -EVESTLKDIAERAGSKGNFSYSRFFAIGLFRLLELA--NATE-----PSILEKLCAALN 246
            E++  L++IA+       F YSR FAIGLF LLEL+  N T+        L  +C  LN
Sbjct: 123 DELQWQLRNIAQNP----KFKYSRLFAIGLFTLLELSEGNITQDEESLAEFLPNICTVLN 182

Query: 247 IDKKGVDRDLDVYRNLLSKLVQAKELLKEYVDREKKKRD 274
           I +  + +DL++YR  L K+ Q ++ + + ++ +KK+R+
Sbjct: 183 ISESKLQKDLEIYRGNLDKIAQVRQAMDDILEAQKKRRE 217

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BLAST of Lsi11G015090 vs. Swiss-Prot
Match: THF1_TRIEI (Protein Thf1 OS=Trichodesmium erythraeum (strain IMS101) GN=thf1 PE=3 SV=1)

HSP 1 Score: 145.2 bits (365), Expect = 1.1e-33
Identity = 79/216 (36.57%), Postives = 129/216 (59.72%), Query Frame = 1


Query: 70  TVAETKLNFLKAYKRPIPSIYNTVLQELIVQQHLMRYKRTYRYDPVFALGFVTVYDQLMD 129
           TV++TK  F   + RPI SIYN V++EL+V+ HL+     Y Y+P +ALG VT +D+ M 
Sbjct: 6   TVSDTKKTFYHFHTRPINSIYNRVIEELLVEMHLISVNVDYSYNPFYALGVVTAFDRFMQ 65

Query: 130 GYPSDEDRDAIFQAYIEALNEDPEQYRIDAKKLEEWARSQTAASLVEFASREGEVEST-- 189
           GY   ED+ +IF A I+   EDP +YR DAK LE+ A   +A+ ++ +      +++T  
Sbjct: 66  GYSPQEDKTSIFNALIQGQEEDPNKYRSDAKGLEDLAGKISASDILSWICLSKNIDNTQY 125

Query: 190 LKDIAERAGSKGNFSYSRFFAIGLFRLLELANA-------TEPSILEKLCAALNIDKKGV 249
           L+D          F YSR FAIGLF LLE+ +             L+K+C +LN+ ++ +
Sbjct: 126 LQDDLRAISENSKFRYSRLFAIGLFTLLEIVDTELIKEQEKRTEALKKICQSLNLVEEKL 185

Query: 250 DRDLDVYRNLLSKLVQAKELLKEYVDREKKKRDERT 277
            +D+D+Y + L ++ QA+  +++ +   +KKR++R+
Sbjct: 186 LKDIDLYLSNLERVAQARSAMEDTLAAMRKKREKRS 221

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BLAST of Lsi11G015090 vs. TrEMBL
Match: A0A0A0K3P0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G046130 PE=3 SV=1)

HSP 1 Score: 548.9 bits (1413), Expect = 3.8e-153
Identity = 284/298 (95.30%), Postives = 291/298 (97.65%), Query Frame = 1


Query: 1   MAAVNSISFSTLNQCSDRRLPVPSARSLASNFDGFRFRTSVFSHYSRVRASTFSSRMVIH 60
           MAAVNSISFSTLNQCSDRRL +PS+RS +SNF GF FRTSVF+HYSRVRASTFSSRMVIH
Sbjct: 1   MAAVNSISFSTLNQCSDRRLLLPSSRSHSSNFHGFPFRTSVFTHYSRVRASTFSSRMVIH 60

Query: 61  CMSAGTDVTTVAETKLNFLKAYKRPIPSIYNTVLQELIVQQHLMRYKRTYRYDPVFALGF 120
           CMSAGTDVTTVAETKLNFLKAYKRPIPSIYNTVLQELIVQQHLMRYKRTYRYDPVFALGF
Sbjct: 61  CMSAGTDVTTVAETKLNFLKAYKRPIPSIYNTVLQELIVQQHLMRYKRTYRYDPVFALGF 120

Query: 121 VTVYDQLMDGYPSDEDRDAIFQAYIEALNEDPEQYRIDAKKLEEWARSQTAASLVEFASR 180
           VTVYDQLM+GYPSDEDR+AIFQAYI+ALNEDPEQYRIDAKK EEWARSQTAASLVEFASR
Sbjct: 121 VTVYDQLMEGYPSDEDREAIFQAYIKALNEDPEQYRIDAKKFEEWARSQTAASLVEFASR 180

Query: 181 EGEVESTLKDIAERAGSKGNFSYSRFFAIGLFRLLELANATEPSILEKLCAALNIDKKGV 240
           EGEVES LKDIAERAGSKGNFSYSRFFAIGLFRLLELANATEPSILEKLCAALNIDKKGV
Sbjct: 181 EGEVESILKDIAERAGSKGNFSYSRFFAIGLFRLLELANATEPSILEKLCAALNIDKKGV 240

Query: 241 DRDLDVYRNLLSKLVQAKELLKEYVDREKKKRDERTGSQTANEAITKCLGEYSMQTGL 299
           DRDLDVYRNLLSKLVQAKELLKEYVDREKKKRDER GSQTANEAITKCLGEYSMQTGL
Sbjct: 241 DRDLDVYRNLLSKLVQAKELLKEYVDREKKKRDERAGSQTANEAITKCLGEYSMQTGL 298

[Close]

BLAST of Lsi11G015090 vs. TrEMBL
Match: A0A061E4M4_THECC (Photosystem II reaction center PSB29 protein OS=Theobroma cacao GN=TCM_007929 PE=3 SV=1)

HSP 1 Score: 450.3 bits (1157), Expect = 1.8e-123
Identity = 233/292 (79.79%), Postives = 261/292 (89.38%), Query Frame = 1


Query: 1   MAAVNSISFSTLNQCS-DRRLPVPSARSLASNFDGFRFRTSVFSHYSRVRASTFSSRMVI 60
           MAAV+S+S S + Q S DR++ VPSAR LASNF+G RFRTSV  H   VR S  +S  V+
Sbjct: 1   MAAVSSLSLSAIGQTSGDRKVNVPSARYLASNFEGLRFRTSVLYHSVGVRGSASASPSVV 60

Query: 61  HCMSAGTDVTTVAETKLNFLKAYKRPIPSIYNTVLQELIVQQHLMRYKRTYRYDPVFALG 120
           HCM A TDV TV+ETKLNFLKAYKRPIPS+YNTVLQELIVQQHLMRYK TYRYD VFALG
Sbjct: 61  HCMCAATDVPTVSETKLNFLKAYKRPIPSVYNTVLQELIVQQHLMRYKWTYRYDAVFALG 120

Query: 121 FVTVYDQLMDGYPSDEDRDAIFQAYIEALNEDPEQYRIDAKKLEEWARSQTAASLVEFAS 180
           FVTVYDQLM+GYPSDEDRDAIFQAYI+AL EDP+QYRIDA+KLEEWARSQT++SLVEF+S
Sbjct: 121 FVTVYDQLMEGYPSDEDRDAIFQAYIKALKEDPQQYRIDAQKLEEWARSQTSSSLVEFSS 180

Query: 181 REGEVESTLKDIAERAGSKGNFSYSRFFAIGLFRLLELANATEPSILEKLCAALNIDKKG 240
           R+GEVE+ LKDIAERAG  G+FSYSRFFA+GLFRLLELANATEP++LEKLCAALNI+K+ 
Sbjct: 181 RDGEVEAILKDIAERAGRMGSFSYSRFFAVGLFRLLELANATEPTVLEKLCAALNINKRS 240

Query: 241 VDRDLDVYRNLLSKLVQAKELLKEYVDREKKKRDERTGSQTANEAITKCLGE 292
           VDRDLDVYRNLLSKLVQAKELLKEYVDREKKKR+ER+ SQ ANEA+ KCLGE
Sbjct: 241 VDRDLDVYRNLLSKLVQAKELLKEYVDREKKKREERSESQKANEAVKKCLGE 292

[Close]

BLAST of Lsi11G015090 vs. TrEMBL
Match: A0A0D2V4U5_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_012G132100 PE=3 SV=1)

HSP 1 Score: 449.1 bits (1154), Expect = 4.1e-123
Identity = 232/293 (79.18%), Postives = 261/293 (89.08%), Query Frame = 1


Query: 1   MAAVNSISFSTLNQCS-DRRLPVPSARSLASNFDGFRFRTSVFSHYSRVRASTFSSRMVI 60
           MAAV+S+SF  + Q S DR+L VPSAR LASNF+GFRFRTS+      +RAST +S  V 
Sbjct: 1   MAAVSSLSFPAIGQTSGDRKLNVPSARYLASNFEGFRFRTSLLYQSVGLRASTTASPSVF 60

Query: 61  HCMSAGTDVTTVAETKLNFLKAYKRPIPSIYNTVLQELIVQQHLMRYKRTYRYDPVFALG 120
           +CMS  TD  TV+ETK +FLKAYKRPIPS+YNTVLQELIVQQHLMRYK+TYRYD VFALG
Sbjct: 61  YCMSTATDTPTVSETKSSFLKAYKRPIPSVYNTVLQELIVQQHLMRYKKTYRYDAVFALG 120

Query: 121 FVTVYDQLMDGYPSDEDRDAIFQAYIEALNEDPEQYRIDAKKLEEWARSQTAASLVEFAS 180
           FVTVYDQLM+GYPSDEDRDAIFQAYI AL EDP+QYR DA+KLEEWAR+QT++SLVEF+S
Sbjct: 121 FVTVYDQLMEGYPSDEDRDAIFQAYINALKEDPQQYRADAQKLEEWARAQTSSSLVEFSS 180

Query: 181 REGEVESTLKDIAERAGSKGNFSYSRFFAIGLFRLLELANATEPSILEKLCAALNIDKKG 240
           R+GEVE+ LKDIAERAGSKG+FSYSRFFAIGLFRLLELANATEP++LEKLCAALNIDK+ 
Sbjct: 181 RDGEVEAILKDIAERAGSKGSFSYSRFFAIGLFRLLELANATEPTVLEKLCAALNIDKRS 240

Query: 241 VDRDLDVYRNLLSKLVQAKELLKEYVDREKKKRDERTGSQTANEAITKCLGEY 293
           VDRDLDVYRNLLSKLVQAKELLKEYVDREKKKR+ER+ S  ANEA+ KCLGEY
Sbjct: 241 VDRDLDVYRNLLSKLVQAKELLKEYVDREKKKREERSESPKANEAVKKCLGEY 293

[Close]

BLAST of Lsi11G015090 vs. TrEMBL
Match: F6HHI1_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_12s0057g00020 PE=3 SV=1)

HSP 1 Score: 447.6 bits (1150), Expect = 1.2e-122
Identity = 230/292 (78.77%), Postives = 257/292 (88.01%), Query Frame = 1


Query: 1   MAAVNSISFSTLNQCSDRRLPVPSARSLASNFDGFRFRTSVFSHYSRVRASTFSSRMVIH 60
           MAAV S+SFS L Q S+R++PVP+ RS AS F+ FRFR + ++   R  +S+ SSRMV+ 
Sbjct: 1   MAAVTSLSFSALGQSSERKVPVPTTRSFASAFEAFRFRANFYAVGVRSSSSSSSSRMVVQ 60

Query: 61  CMSAGTDVTTVAETKLNFLKAYKRPIPSIYNTVLQELIVQQHLMRYKRTYRYDPVFALGF 120
           CMS+ TDV TV+ETK+NFLK YKRPIPSIYNT+LQEL+VQQHLMRYKRTYRYD VFALGF
Sbjct: 61  CMSSVTDVPTVSETKMNFLKNYKRPIPSIYNTLLQELMVQQHLMRYKRTYRYDAVFALGF 120

Query: 121 VTVYDQLMDGYPSDEDRDAIFQAYIEALNEDPEQYRIDAKKLEEWARSQTAASLVEFASR 180
           VTVYDQLMDGYPSDEDRD IFQ YI+AL EDPEQYR DA+ LEEWARSQTA+SLVEF+S+
Sbjct: 121 VTVYDQLMDGYPSDEDRDIIFQVYIKALREDPEQYRKDAQMLEEWARSQTASSLVEFSSK 180

Query: 181 EGEVESTLKDIAERAGSKGNFSYSRFFAIGLFRLLELANATEPSILEKLCAALNIDKKGV 240
           EGEVE  LKDIAERAG KG+FSYSRFFAIGLFRLLELANATEP+ILEKLCAA NI K+ V
Sbjct: 181 EGEVEGILKDIAERAGGKGSFSYSRFFAIGLFRLLELANATEPTILEKLCAAFNISKRSV 240

Query: 241 DRDLDVYRNLLSKLVQAKELLKEYVDREKKKRDERTGSQTANEAITKCLGEY 293
           DRDLDVYRNLL+KLVQAKELLKEYVDREKKKR+ER  SQ ANEAITKCLGEY
Sbjct: 241 DRDLDVYRNLLTKLVQAKELLKEYVDREKKKREERVESQKANEAITKCLGEY 292

[Close]

BLAST of Lsi11G015090 vs. TrEMBL
Match: A0A067EX58_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g022333mg PE=3 SV=1)

HSP 1 Score: 447.6 bits (1150), Expect = 1.2e-122
Identity = 230/294 (78.23%), Postives = 260/294 (88.44%), Query Frame = 1


Query: 1   MAAVNSISFSTLNQCS-DRRLPVPSARSLASNFDGFRFRTSVFSHYSRVRASTFSSRMVI 60
           MA++ S++F+++ Q S  R++ V S RSL SNF+GFRFRTS+F H  R RAS+ SSRM+I
Sbjct: 1   MASLTSVAFTSIGQTSCQRKVNVSSTRSLVSNFEGFRFRTSLFCHCVRFRASSSSSRMII 60

Query: 61  HCMSAGTDVT-TVAETKLNFLKAYKRPIPSIYNTVLQELIVQQHLMRYKRTYRYDPVFAL 120
            CMS  TDV  TVAETK+NFLK YKRPIPSIYNTVLQELIVQQHLMRYKRTY+YDPVFAL
Sbjct: 61  QCMSTATDVPPTVAETKMNFLKLYKRPIPSIYNTVLQELIVQQHLMRYKRTYQYDPVFAL 120

Query: 121 GFVTVYDQLMDGYPSDEDRDAIFQAYIEALNEDPEQYRIDAKKLEEWARSQTAASLVEFA 180
           GFVTVYD+LM+GYPS+EDR+AIFQAYI AL EDPEQYRIDA+KLEEWAR QTA+SLVEF 
Sbjct: 121 GFVTVYDRLMEGYPSEEDREAIFQAYITALKEDPEQYRIDAQKLEEWARGQTASSLVEFP 180

Query: 181 SREGEVESTLKDIAERAGSKGNFSYSRFFAIGLFRLLELANATEPSILEKLCAALNIDKK 240
           S+EGEVE  LKDIAERA  KGNFSYSRFFA+GLFRLLELANATEP++LEKLCA LN++K+
Sbjct: 181 SKEGEVEGLLKDIAERASGKGNFSYSRFFAVGLFRLLELANATEPTVLEKLCAVLNVNKR 240

Query: 241 GVDRDLDVYRNLLSKLVQAKELLKEYVDREKKKRDERTGSQTANEAITKCLGEY 293
            VDRDLDVYRNLLSKL+QAKELLKEYVDREKKKR+ERT  Q ANEAI KCLGEY
Sbjct: 241 SVDRDLDVYRNLLSKLLQAKELLKEYVDREKKKREERTEPQKANEAIKKCLGEY 294

[Close]

BLAST of Lsi11G015090 vs. TAIR10
Match: AT2G20890.1 (AT2G20890.1 photosystem II reaction center PSB29 protein)

HSP 1 Score: 387.9 bits (995), Expect = 5.7e-108
Identity = 211/290 (72.76%), Postives = 245/290 (84.48%), Query Frame = 1


Query: 3   AVNSISFSTLNQCSDRRLPVPSARSLASNFDGFRFRTSVFSHYSRVRASTFSSRMVIHCM 62
           A++S+SF  L Q SD+     S+R LAS     R  T  FS  S    ST  S+ +IHCM
Sbjct: 5   AISSLSFPALGQ-SDKISNFASSRPLAS---AIRICTK-FSRLSLNSRST--SKSLIHCM 64

Query: 63  SAGT-DVTTVAETKLNFLKAYKRPIPSIYNTVLQELIVQQHLMRYKRTYRYDPVFALGFV 122
           S  T DV  V+ETK  FLKAYKRPIPSIYNTVLQELIVQQHLMRYK+TYRYDPVFALGFV
Sbjct: 65  SNVTADVPPVSETKSKFLKAYKRPIPSIYNTVLQELIVQQHLMRYKKTYRYDPVFALGFV 124

Query: 123 TVYDQLMDGYPSDEDRDAIFQAYIEALNEDPEQYRIDAKKLEEWARSQTAASLVEFASRE 182
           TVYDQLM+GYPSD+DRDAIF+AYIEALNEDP+QYRIDA+K+EEWARSQT+ASLV+F+S+E
Sbjct: 125 TVYDQLMEGYPSDQDRDAIFKAYIEALNEDPKQYRIDAQKMEEWARSQTSASLVDFSSKE 184

Query: 183 GEVESTLKDIAERAGSKGNFSYSRFFAIGLFRLLELANATEPSILEKLCAALNIDKKGVD 242
           G++E+ LKDIA RAGSK  FSYSRFFA+GLFRLLELA+AT+P++L+KLCA+LNI+KK VD
Sbjct: 185 GDIEAVLKDIAGRAGSKEGFSYSRFFAVGLFRLLELASATDPTVLDKLCASLNINKKSVD 244

Query: 243 RDLDVYRNLLSKLVQAKELLKEYVDREKKKRDERTGSQTANEAITKCLGE 292
           RDLDVYRNLLSKLVQAKELLKEYV+REKKK+ ER  SQ ANE I+KCLG+
Sbjct: 245 RDLDVYRNLLSKLVQAKELLKEYVEREKKKQGERAQSQKANETISKCLGD 287

[Close]

BLAST of Lsi11G015090 vs. NCBI nr
Match: gi|659110691|ref|XP_008455361.1| (PREDICTED: protein THYLAKOID FORMATION1, chloroplastic [Cucumis melo])

HSP 1 Score: 557.0 bits (1434), Expect = 2.0e-155
Identity = 285/298 (95.64%), Postives = 294/298 (98.66%), Query Frame = 1


Query: 1   MAAVNSISFSTLNQCSDRRLPVPSARSLASNFDGFRFRTSVFSHYSRVRASTFSSRMVIH 60
           MAAVNSISFSTLNQCSDRR PVPS+RSL+SNFDGFRFRTS+F+HYSRVR STFSSRMVIH
Sbjct: 1   MAAVNSISFSTLNQCSDRRFPVPSSRSLSSNFDGFRFRTSLFTHYSRVRPSTFSSRMVIH 60

Query: 61  CMSAGTDVTTVAETKLNFLKAYKRPIPSIYNTVLQELIVQQHLMRYKRTYRYDPVFALGF 120
           CMSAGTDVTTVAETKLNFLKAYKRPIPSIYNTVLQELIVQQHLMRYKRTYRYDPVFALGF
Sbjct: 61  CMSAGTDVTTVAETKLNFLKAYKRPIPSIYNTVLQELIVQQHLMRYKRTYRYDPVFALGF 120

Query: 121 VTVYDQLMDGYPSDEDRDAIFQAYIEALNEDPEQYRIDAKKLEEWARSQTAASLVEFASR 180
           VTVYDQLM+GYPSDEDR+AIFQAYI+ALNEDPEQYRIDA+KLEEWARSQTAASLVEFASR
Sbjct: 121 VTVYDQLMEGYPSDEDREAIFQAYIKALNEDPEQYRIDAQKLEEWARSQTAASLVEFASR 180

Query: 181 EGEVESTLKDIAERAGSKGNFSYSRFFAIGLFRLLELANATEPSILEKLCAALNIDKKGV 240
           EGEVES LKDIAERAGSKGNFSYSRFFAIGLFRLLELANATEPSILEKLCAALNIDKKGV
Sbjct: 181 EGEVESILKDIAERAGSKGNFSYSRFFAIGLFRLLELANATEPSILEKLCAALNIDKKGV 240

Query: 241 DRDLDVYRNLLSKLVQAKELLKEYVDREKKKRDERTGSQTANEAITKCLGEYSMQTGL 299
           DRDLDVYRNLLSKLVQAKELLKEY+DREKKKRDER GSQTANEAITKCLGEYSMQTGL
Sbjct: 241 DRDLDVYRNLLSKLVQAKELLKEYIDREKKKRDERAGSQTANEAITKCLGEYSMQTGL 298

[Close]

BLAST of Lsi11G015090 vs. NCBI nr
Match: gi|449438054|ref|XP_004136805.1| (PREDICTED: protein THYLAKOID FORMATION1, chloroplastic [Cucumis sativus])

HSP 1 Score: 548.9 bits (1413), Expect = 5.5e-153
Identity = 284/298 (95.30%), Postives = 291/298 (97.65%), Query Frame = 1


Query: 1   MAAVNSISFSTLNQCSDRRLPVPSARSLASNFDGFRFRTSVFSHYSRVRASTFSSRMVIH 60
           MAAVNSISFSTLNQCSDRRL +PS+RS +SNF GF FRTSVF+HYSRVRASTFSSRMVIH
Sbjct: 1   MAAVNSISFSTLNQCSDRRLLLPSSRSHSSNFHGFPFRTSVFTHYSRVRASTFSSRMVIH 60

Query: 61  CMSAGTDVTTVAETKLNFLKAYKRPIPSIYNTVLQELIVQQHLMRYKRTYRYDPVFALGF 120
           CMSAGTDVTTVAETKLNFLKAYKRPIPSIYNTVLQELIVQQHLMRYKRTYRYDPVFALGF
Sbjct: 61  CMSAGTDVTTVAETKLNFLKAYKRPIPSIYNTVLQELIVQQHLMRYKRTYRYDPVFALGF 120

Query: 121 VTVYDQLMDGYPSDEDRDAIFQAYIEALNEDPEQYRIDAKKLEEWARSQTAASLVEFASR 180
           VTVYDQLM+GYPSDEDR+AIFQAYI+ALNEDPEQYRIDAKK EEWARSQTAASLVEFASR
Sbjct: 121 VTVYDQLMEGYPSDEDREAIFQAYIKALNEDPEQYRIDAKKFEEWARSQTAASLVEFASR 180

Query: 181 EGEVESTLKDIAERAGSKGNFSYSRFFAIGLFRLLELANATEPSILEKLCAALNIDKKGV 240
           EGEVES LKDIAERAGSKGNFSYSRFFAIGLFRLLELANATEPSILEKLCAALNIDKKGV
Sbjct: 181 EGEVESILKDIAERAGSKGNFSYSRFFAIGLFRLLELANATEPSILEKLCAALNIDKKGV 240

Query: 241 DRDLDVYRNLLSKLVQAKELLKEYVDREKKKRDERTGSQTANEAITKCLGEYSMQTGL 299
           DRDLDVYRNLLSKLVQAKELLKEYVDREKKKRDER GSQTANEAITKCLGEYSMQTGL
Sbjct: 241 DRDLDVYRNLLSKLVQAKELLKEYVDREKKKRDERAGSQTANEAITKCLGEYSMQTGL 298

[Close]

BLAST of Lsi11G015090 vs. NCBI nr
Match: gi|658025445|ref|XP_008348123.1| (PREDICTED: protein THYLAKOID FORMATION1, chloroplastic-like [Malus domestica])

HSP 1 Score: 458.0 bits (1177), Expect = 1.3e-125
Identity = 231/295 (78.31%), Postives = 263/295 (89.15%), Query Frame = 1


Query: 1   MAAVNSISFSTLNQCSDRRLPVPSARSLASNFDGFRFRTSVFSHYSRVRASTFSSRMVIH 60
           MAAV S+SFS L+QCSDR+  V SAR+L SN +G RFRTS+ SHY  +RAS+ SSRMV+H
Sbjct: 1   MAAVASLSFSALSQCSDRKSVVSSARNLGSNAEGIRFRTSISSHYGGIRASSSSSRMVVH 60

Query: 61  CMSAGTDVTTVAETKLNFLKAYKRPIPSIYNTVLQELIVQQHLMRYKRTYRYDPVFALGF 120
           CM+  +D  TVA+TKLNFLKAYKRPIPS+YN+VLQELIVQQHLM+YKRTYRYDPVFALGF
Sbjct: 61  CMAGSSDAPTVADTKLNFLKAYKRPIPSVYNSVLQELIVQQHLMKYKRTYRYDPVFALGF 120

Query: 121 VTVYDQLMDGYPSDEDRDAIFQAYIEALNEDPEQYRIDAKKLEEWARSQTAASLVEFASR 180
           VTVYDQLMDGYPSDEDR+AIFQAYI+ALNEDPEQYR DA+KLEEWAR+QT++SLVEF SR
Sbjct: 121 VTVYDQLMDGYPSDEDREAIFQAYIKALNEDPEQYRTDAQKLEEWARAQTSSSLVEFPSR 180

Query: 181 EGEVESTLKDIAERAGSKGNFSYSRFFAIGLFRLLELANATEPSILEKLCAALNIDKKGV 240
           EGEVE  LKDIAERA  K +FSYSRFFAIGLFRLLE+A ATEP++LEKLCAALNIDK+ V
Sbjct: 181 EGEVEVALKDIAERAAGKESFSYSRFFAIGLFRLLEVAKATEPTVLEKLCAALNIDKRSV 240

Query: 241 DRDLDVYRNLLSKLVQAKELLKEYVDREKKKRDERTGSQTANEAITKCLGEYSMQ 296
           DRDLDVYRNLLSKLVQAKELL+EYV REKKKR+ER  +Q A+E +TKCLG+Y  Q
Sbjct: 241 DRDLDVYRNLLSKLVQAKELLREYVAREKKKREERVETQKASETVTKCLGDYVCQ 295

[Close]

BLAST of Lsi11G015090 vs. NCBI nr
Match: gi|694324363|ref|XP_009353207.1| (PREDICTED: protein THYLAKOID FORMATION1, chloroplastic-like [Pyrus x bretschneideri])

HSP 1 Score: 457.6 bits (1176), Expect = 1.7e-125
Identity = 230/295 (77.97%), Postives = 264/295 (89.49%), Query Frame = 1


Query: 1   MAAVNSISFSTLNQCSDRRLPVPSARSLASNFDGFRFRTSVFSHYSRVRASTFSSRMVIH 60
           MAAV S+SFS L+QCSDR+  V  AR+L SN +G RFRTS+ SHY  +RAS++SSRMV+H
Sbjct: 1   MAAVASLSFSALSQCSDRKSVVSPARNLGSNAEGIRFRTSISSHYGGIRASSWSSRMVVH 60

Query: 61  CMSAGTDVTTVAETKLNFLKAYKRPIPSIYNTVLQELIVQQHLMRYKRTYRYDPVFALGF 120
           CM+  +D  TVA+TKLNFLKAYKRPIPS+YN+VLQELIVQQHLM+YKRTYRYDPVFALGF
Sbjct: 61  CMAGSSDSPTVADTKLNFLKAYKRPIPSVYNSVLQELIVQQHLMKYKRTYRYDPVFALGF 120

Query: 121 VTVYDQLMDGYPSDEDRDAIFQAYIEALNEDPEQYRIDAKKLEEWARSQTAASLVEFASR 180
           VTVYDQLMDGYPSDEDR+AIFQAYI+ALNEDPEQYR DA+KLEEWAR+QT++SLVEF SR
Sbjct: 121 VTVYDQLMDGYPSDEDREAIFQAYIKALNEDPEQYRTDAQKLEEWARAQTSSSLVEFPSR 180

Query: 181 EGEVESTLKDIAERAGSKGNFSYSRFFAIGLFRLLELANATEPSILEKLCAALNIDKKGV 240
           EGEVE+ LKDIAERA  K +FSYSRFFAIGLFRLLE+A ATEP++LEKLCAALNIDK+ V
Sbjct: 181 EGEVEAALKDIAERAAGKESFSYSRFFAIGLFRLLEVAKATEPTVLEKLCAALNIDKRSV 240

Query: 241 DRDLDVYRNLLSKLVQAKELLKEYVDREKKKRDERTGSQTANEAITKCLGEYSMQ 296
           DRDLDVYRNLLSKLVQAKELL+EYV REKKKR+ER  +Q A+E +TKCLG+Y  Q
Sbjct: 241 DRDLDVYRNLLSKLVQAKELLREYVAREKKKREERAETQKASETVTKCLGDYVCQ 295

[Close]

BLAST of Lsi11G015090 vs. NCBI nr
Match: gi|1009128024|ref|XP_015881005.1| (PREDICTED: protein THYLAKOID FORMATION1, chloroplastic [Ziziphus jujuba])

HSP 1 Score: 454.1 bits (1167), Expect = 1.8e-124
Identity = 234/293 (79.86%), Postives = 262/293 (89.42%), Query Frame = 1


Query: 1   MAAVNSISFSTLNQCSDRR-LPVPSARSLASNFDGFRFRTSVFSHYSRVRASTFSSRMVI 60
           MAA+ S+SFS L+  SDR+ L   S R+ ASN DGFR RTS   HY   R ST SSRMVI
Sbjct: 1   MAALTSLSFSALSHFSDRKALIASSTRNSASNSDGFRLRTSFSCHYVGFRTSTSSSRMVI 60

Query: 61  HCMSAGTDVTTVAETKLNFLKAYKRPIPSIYNTVLQELIVQQHLMRYKRTYRYDPVFALG 120
           HCMS+ T + TV+ETKLNFLKAYKRPIPSIYN+VL ELIVQQHL+RYKRTY YDPVFALG
Sbjct: 61  HCMSSTTALPTVSETKLNFLKAYKRPIPSIYNSVLLELIVQQHLIRYKRTYSYDPVFALG 120

Query: 121 FVTVYDQLMDGYPSDEDRDAIFQAYIEALNEDPEQYRIDAKKLEEWARSQTAASLVEFAS 180
           FVTVYDQLMDGYPSDEDR+AIFQAYI+ALNEDPEQYRIDAKK+EEWARSQTA+SLV+F+S
Sbjct: 121 FVTVYDQLMDGYPSDEDREAIFQAYIKALNEDPEQYRIDAKKMEEWARSQTASSLVDFSS 180

Query: 181 REGEVESTLKDIAERAGSKGNFSYSRFFAIGLFRLLELANATEPSILEKLCAALNIDKKG 240
           REGEVE TLKDIAERAG KG+FSYSRFFA+GLFRLLELANA+EP++LEKLCAALNI+KK 
Sbjct: 181 REGEVEGTLKDIAERAGGKGSFSYSRFFAVGLFRLLELANASEPTVLEKLCAALNINKKS 240

Query: 241 VDRDLDVYRNLLSKLVQAKELLKEYVDREKKKRDERTGSQTANEAITKCLGEY 293
           VDRDLD+YRNLLSKLVQAK+LLKEYVDREKKKR+ER  SQ ANEA+T+CLG+Y
Sbjct: 241 VDRDLDIYRNLLSKLVQAKDLLKEYVDREKKKREERAESQKANEAVTQCLGDY 293

The following BLAST results are available for this feature:

BLAST of Lsi11G015090 vs. Swiss-Prot


Match Name	E-value	Identity	Description
THF1_SOLTU	1.4e-108	69.28	Protein THYLAKOID FORMATION1, chloroplastic OS=Solanum tuberosum GN=THF1 PE=2 SV...	[more]
THF1_ARATH	1.0e-106	72.76	Protein THYLAKOID FORMATION 1, chloroplastic OS=Arabidopsis thaliana GN=THF1 PE=...	[more]
THF1_ORYSJ	4.6e-99	67.71	Protein THYLAKOID FORMATION1, chloroplastic OS=Oryza sativa subsp. japonica GN=T...	[more]
THF1_ACAM1	1.6e-35	37.90	Protein Thf1 OS=Acaryochloris marina (strain MBIC 11017) GN=thf1 PE=3 SV=1	[more]
THF1_TRIEI	1.1e-33	36.57	Protein Thf1 OS=Trichodesmium erythraeum (strain IMS101) GN=thf1 PE=3 SV=1	[more]

BLAST of Lsi11G015090 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K3P0_CUCSA	3.8e-153	95.30	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G046130 PE=3 SV=1	[more]
A0A061E4M4_THECC	1.8e-123	79.79	Photosystem II reaction center PSB29 protein OS=Theobroma cacao GN=TCM_007929 PE...	[more]
A0A0D2V4U5_GOSRA	4.1e-123	79.18	Uncharacterized protein OS=Gossypium raimondii GN=B456_012G132100 PE=3 SV=1	[more]
F6HHI1_VITVI	1.2e-122	78.77	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_12s0057g00020 PE=3 SV=...	[more]
A0A067EX58_CITSI	1.2e-122	78.23	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g022333mg PE=3 SV=1	[more]

BLAST of Lsi11G015090 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G20890.1	5.7e-108	72.76	photosystem II reaction center PSB29 protein	[more]

BLAST of Lsi11G015090 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659110691\|ref\|XP_008455361.1\|	2.0e-155	95.64	PREDICTED: protein THYLAKOID FORMATION1, chloroplastic [Cucumis melo]	[more]
gi\|449438054\|ref\|XP_004136805.1\|	5.5e-153	95.30	PREDICTED: protein THYLAKOID FORMATION1, chloroplastic [Cucumis sativus]	[more]
gi\|658025445\|ref\|XP_008348123.1\|	1.3e-125	78.31	PREDICTED: protein THYLAKOID FORMATION1, chloroplastic-like [Malus domestica]	[more]
gi\|694324363\|ref\|XP_009353207.1\|	1.7e-125	77.97	PREDICTED: protein THYLAKOID FORMATION1, chloroplastic-like [Pyrus x bretschneid...	[more]
gi\|1009128024\|ref\|XP_015881005.1\|	1.8e-124	79.86	PREDICTED: protein THYLAKOID FORMATION1, chloroplastic [Ziziphus jujuba]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0015979	photosynthesis
GO:0010207	photosystem II assembly

Vocabulary: **INTERPRO**
Term	Definition
IPR017499	Thf1

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010207	photosystem II assembly
biological_process	GO:0009902	chloroplast relocation
biological_process	GO:0042793	transcription from plastid promoter
biological_process	GO:0006364	rRNA processing
biological_process	GO:0006417	regulation of translation
biological_process	GO:0035304	regulation of protein dephosphorylation
biological_process	GO:0045893	positive regulation of transcription, DNA-templated
biological_process	GO:0009773	photosynthetic electron transport in photosystem I
biological_process	GO:0006655	phosphatidylglycerol biosynthetic process
biological_process	GO:0019288	isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway
biological_process	GO:0007186	G-protein coupled receptor signaling pathway
biological_process	GO:0042742	defense response to bacterium
biological_process	GO:0015979	photosynthesis
biological_process	GO:0010027	thylakoid membrane organization
biological_process	GO:0010182	sugar mediated signaling pathway
biological_process	GO:0045038	protein import into chloroplast thylakoid membrane
biological_process	GO:0045037	protein import into chloroplast stroma
biological_process	GO:0015996	chlorophyll catabolic process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0009527	plastid outer membrane
cellular_component	GO:0009528	plastid inner membrane
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0009570	chloroplast stroma
cellular_component	GO:0009941	chloroplast envelope
cellular_component	GO:0010319	stromule
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi11G015090.1	Lsi11G015090.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR017499	Protein Thf1	HAMAP	MF_01843	Thf1	coord: 65..273 score: 22
IPR017499	Protein Thf1	PFAM	PF11264	ThylakoidFormat	coord: 70..275 score: 6.3
IPR017499	Protein Thf1	TIGRFAMs	TIGR03060	TIGR03060	coord: 67..272 score: 6.9
None	No IPR available	unknown	Coil	Coil	coord: 247..274 scor
None	No IPR available	PANTHER	PTHR34793	FAMILY NOT NAMED	coord: 2..297 score: 4.3E
None	No IPR available	PANTHER	PTHR34793:SF1	PROTEIN THYLAKOID FORMATION 1, CHLOROPLASTIC	coord: 2..297 score: 4.3E

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi11G015090	Csa7G046130	Cucumber (Chinese Long) v2	culsiB494
Lsi11G015090	CSPI07G04230	Wild cucumber (PI 183967)	cpilsiB505
Lsi11G015090	Cucsa.148030	Cucumber (Gy14) v1	cgylsiB237
Lsi11G015090	CmaCh11G018540	Cucurbita maxima (Rimu)	cmalsiB091
Lsi11G015090	CmaCh19G009590	Cucurbita maxima (Rimu)	cmalsiB472
Lsi11G015090	CmoCh19G009890	Cucurbita moschata (Rifu)	cmolsiB457
Lsi11G015090	CmoCh11G019300	Cucurbita moschata (Rifu)	cmolsiB080
Lsi11G015090	Cla007720	Watermelon (97103) v1	lsiwmB100
Lsi11G015090	MELO3C018772	Melon (DHL92) v3.5.1	lsimeB095
Lsi11G015090	ClCG02G001360	Watermelon (Charleston Gray)	lsiwcgB097
Lsi11G015090	MELO3C018772.2	Melon (DHL92) v3.6.1	lsimedB101
Lsi11G015090	Cla97C02G027820	Watermelon (97103) v2	lsiwmbB086
Lsi11G015090	Bhi05G001568	Wax gourd	lsiwgoB116
Lsi11G015090	Cp4.1LG04g03250	Cucurbita pepo (Zucchini)	cpelsiB526
Lsi11G015090	Cp4.1LG15g07800	Cucurbita pepo (Zucchini)	cpelsiB199
Lsi11G015090	CsGy7G003860	Cucumber (Gy14) v2	cgyblsiB462
Lsi11G015090	Carg19098	Silver-seed gourd	carlsiB659

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi11G015090	Cucumber (Chinese Long) v3	cuclsiB009
Lsi11G015090	Cucumber (Chinese Long) v3	cuclsiB453
Lsi11G015090	Cucumber (Chinese Long) v3	cuclsiB529
Lsi11G015090	Watermelon (97103) v2	lsiwmbB073
Lsi11G015090	Watermelon (97103) v2	lsiwmbB092
Lsi11G015090	Wax gourd	lsiwgoB129
Lsi11G015090	Wax gourd	lsiwgoB130
Lsi11G015090	Bottle gourd (USVL1VR-Ls)	lsilsiB024
Lsi11G015090	Bottle gourd (USVL1VR-Ls)	lsilsiB048
Lsi11G015090	Bottle gourd (USVL1VR-Ls)	lsilsiB049
Lsi11G015090	Cucumber (Gy14) v1	cgylsiB021
Lsi11G015090	Cucurbita maxima (Rimu)	cmalsiB198
Lsi11G015090	Cucurbita maxima (Rimu)	cmalsiB561
Lsi11G015090	Cucurbita maxima (Rimu)	cmalsiB785
Lsi11G015090	Cucurbita moschata (Rifu)	cmolsiB188
Lsi11G015090	Cucurbita moschata (Rifu)	cmolsiB544
Lsi11G015090	Cucurbita moschata (Rifu)	cmolsiB581
Lsi11G015090	Cucurbita pepo (Zucchini)	cpelsiB606
Lsi11G015090	Wild cucumber (PI 183967)	cpilsiB011
Lsi11G015090	Wild cucumber (PI 183967)	cpilsiB430
Lsi11G015090	Cucumber (Chinese Long) v2	culsiB012
Lsi11G015090	Melon (DHL92) v3.5.1	lsimeB090
Lsi11G015090	Melon (DHL92) v3.5.1	lsimeB119
Lsi11G015090	Watermelon (Charleston Gray)	lsiwcgB104
Lsi11G015090	Watermelon (Charleston Gray)	lsiwcgB089
Lsi11G015090	Watermelon (97103) v1	lsiwmB093
Lsi11G015090	Watermelon (97103) v1	lsiwmB099
Lsi11G015090	Melon (DHL92) v3.6.1	lsimedB096
Lsi11G015090	Melon (DHL92) v3.6.1	lsimedB126
Lsi11G015090	Silver-seed gourd	carlsiB028
Lsi11G015090	Silver-seed gourd	carlsiB584
Lsi11G015090	Silver-seed gourd	carlsiB795