WMU04737 (transcribed_cluster) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	WMU04737
Type	transcribed_cluster
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Protein THYLAKOID FORMATION1, chloroplastic
Location	Chr2 : 616373 .. 624235 (-)
Sequence length	455

Genome Viewer

Sequences

The following sequences are available for this feature:

transcribed_cluster sequence

CCTTGATGTATACCGCAACCTGCTTTCAAAGTTGGTTCAAGCGAAGGAGCTCCTAAAGGAATACGTCGATAGAGAGAAGAAGAAAAGAGATGAGAGGAGTGGATCACAGACAGCTAATGAGGCCATAACTAAATGCTTGGGAGAATACAGCATGCAGACTGGTTTGTAAAGAAAAGATGATTGGAGCACTTCCTAATTTGAGATAGACTTGAGAGTTTATAGCAATATTCTAAATTACCCTATAGATATGCATCTGTAATGAATTGTTGGGTCTCATGCATTTGGTAAATTTTGTATTCAGCCAGGCACTACCTTTATTTCTCATTTGATATAACCACCACTCAAGCTATTTTTAATCATTTGTATTACATATTTTAGAGCGCAATTGTTAATACAAATGCTATCGCACTCTGTGCAGTAATCACTCTCCAAGTGATATTTGACATAAAAAAAAA

Library


Library category	ESTs
watermelon fruit 10d library	1
watermelon fruit 18d library	1
watermelon fruit 26d library	2
watermelon fruit 34d library	5

Homology

[Close]

BLAST of WMU04737 vs. TAIR10
Match: AT2G20890.1 (AT2G20890.1 photosystem II reaction center PSB29 protein)

HSP 1 Score: 79.7 bits (195), Expect = 1.7e-15
Identity = 39/48 (81.25%), Postives = 42/48 (87.50%), Query Frame = 2


Query: 2   LDVYRNLLSKLVQAKELLKEYVDREKKKRDERSGSQTANEAITKCLGE 61
           LDVYRNLLSKLVQAKELLKEYV+REKKK+ ER+ SQ ANE I+KCLG+
Sbjct: 240 LDVYRNLLSKLVQAKELLKEYVEREKKKQGERAQSQKANETISKCLGD 287

Query: 62   121
           
Sbjct: 300  287

Query: 122  146
           
Sbjct: 360  287

[Close]

BLAST of WMU04737 vs. Swiss-Prot
Match: THF1_SOLTU (Protein THYLAKOID FORMATION1, chloroplastic OS=Solanum tuberosum GN=THF1 PE=2 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 3.0e-14
Identity = 40/49 (81.63%), Postives = 42/49 (85.71%), Query Frame = 2


Query: 2   LDVYRNLLSKLVQAKELLKEYVDREKKKRDERSGSQTANEAITKCLGEY 61
           LDVYRNLLSKLVQAKELLKEYV+REKKKR ER  +Q ANE +TKCLG+Y
Sbjct: 241 LDVYRNLLSKLVQAKELLKEYVEREKKKRGERE-TQKANETVTKCLGDY 288

Query: 62   121
           
Sbjct: 301  288

Query: 122  149
           
Sbjct: 361  288

[Close]

BLAST of WMU04737 vs. Swiss-Prot
Match: THF1_ARATH (Protein THYLAKOID FORMATION 1, chloroplastic OS=Arabidopsis thaliana GN=THF1 PE=1 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 3.0e-14
Identity = 39/48 (81.25%), Postives = 42/48 (87.50%), Query Frame = 2


Query: 2   LDVYRNLLSKLVQAKELLKEYVDREKKKRDERSGSQTANEAITKCLGE 61
           LDVYRNLLSKLVQAKELLKEYV+REKKK+ ER+ SQ ANE I+KCLG+
Sbjct: 240 LDVYRNLLSKLVQAKELLKEYVEREKKKQGERAQSQKANETISKCLGD 287

Query: 62   121
           
Sbjct: 300  287

Query: 122  146
           
Sbjct: 360  287

[Close]

BLAST of WMU04737 vs. Swiss-Prot
Match: THF1_ORYSJ (Protein THYLAKOID FORMATION1, chloroplastic OS=Oryza sativa subsp. japonica GN=THF1 PE=2 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 3.6e-12
Identity = 35/44 (79.55%), Postives = 39/44 (88.64%), Query Frame = 2


Query: 2   LDVYRNLLSKLVQAKELLKEYVDREKKKRDERSGSQTANEAITK 61
           LDVYRN+LSKLVQAKELLKEYV+REKKKR+ERS +  +NEA+TK
Sbjct: 234 LDVYRNILSKLVQAKELLKEYVEREKKKREERSETPKSNEAVTK 277

Query: 62   121
           
Sbjct: 294  277

Query: 122  134
           
Sbjct: 354  277

[Close]

BLAST of WMU04737 vs. TrEMBL
Match: A0A0A0K3P0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G046130 PE=3 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 5.1e-21
Identity = 54/55 (98.18%), Postives = 55/55 (100.00%), Query Frame = 2


Query: 2   LDVYRNLLSKLVQAKELLKEYVDREKKKRDERSGSQTANEAITKCLGEYSMQTGL 61
           LDVYRNLLSKLVQAKELLKEYVDREKKKRDER+GSQTANEAITKCLGEYSMQTGL
Sbjct: 244 LDVYRNLLSKLVQAKELLKEYVDREKKKRDERAGSQTANEAITKCLGEYSMQTGL 298

Query: 62   121
           
Sbjct: 304  298

Query: 122  167
           
Sbjct: 364  298

[Close]

BLAST of WMU04737 vs. TrEMBL
Match: M0TZM8_MUSAM (Uncharacterized protein OS=Musa acuminata subsp. malaccensis PE=3 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 3.2e-15
Identity = 44/53 (83.02%), Postives = 48/53 (90.57%), Query Frame = 2


Query: 2   LDVYRNLLSKLVQAKELLKEYVDREKKKRDERSGSQTANEAITKCLGEYSMQT 61
           LDVYRNLLSKLVQAKELLKEYVDREKKKR+ERSG+Q ANEAITKC G++   T
Sbjct: 230 LDVYRNLLSKLVQAKELLKEYVDREKKKREERSGTQKANEAITKCTGDFRSVT 282

Query: 62   121
           
Sbjct: 290  282

Query: 122  161
           
Sbjct: 350  282

[Close]

BLAST of WMU04737 vs. TrEMBL
Match: A0A059DG08_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_A01774 PE=3 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 4.2e-15
Identity = 44/49 (89.80%), Postives = 46/49 (93.88%), Query Frame = 2


Query: 2   LDVYRNLLSKLVQAKELLKEYVDREKKKRDERSGSQTANEAITKCLGEY 61
           LDVYRNLLSKLVQAKELLKEYVDREKKKR+ER  SQ ANEAITKC+GEY
Sbjct: 256 LDVYRNLLSKLVQAKELLKEYVDREKKKREERKESQKANEAITKCVGEY 304

Query: 62   121
           
Sbjct: 316  304

Query: 122  149
           
Sbjct: 376  304

[Close]

BLAST of WMU04737 vs. TrEMBL
Match: F6HHI1_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_12s0057g00020 PE=3 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 7.2e-15
Identity = 44/49 (89.80%), Postives = 46/49 (93.88%), Query Frame = 2


Query: 2   LDVYRNLLSKLVQAKELLKEYVDREKKKRDERSGSQTANEAITKCLGEY 61
           LDVYRNLL+KLVQAKELLKEYVDREKKKR+ER  SQ ANEAITKCLGEY
Sbjct: 244 LDVYRNLLTKLVQAKELLKEYVDREKKKREERVESQKANEAITKCLGEY 292

Query: 62   121
           
Sbjct: 304  292

Query: 122  149
           
Sbjct: 364  292

[Close]

BLAST of WMU04737 vs. TrEMBL
Match: V7BZ23_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_005G108600g PE=3 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 1.2e-14
Identity = 44/48 (91.67%), Postives = 45/48 (93.75%), Query Frame = 2


Query: 2   LDVYRNLLSKLVQAKELLKEYVDREKKKRDERSGSQTANEAITKCLGE 61
           LDVYRNLLSKLVQAKELLKEYVDREKKKRDER+  Q ANEAITKCLGE
Sbjct: 245 LDVYRNLLSKLVQAKELLKEYVDREKKKRDERAEPQKANEAITKCLGE 292

Query: 62   121
           
Sbjct: 305  292

Query: 122  146
           
Sbjct: 365  292

[Close]

BLAST of WMU04737 vs. NCBI nr
Match: gi|449438054|ref|XP_004136805.1| (PREDICTED: protein THYLAKOID FORMATION1, chloroplastic [Cucumis sativus])

HSP 1 Score: 106.3 bits (264), Expect = 4.8e-20
Identity = 54/55 (98.18%), Postives = 55/55 (100.00%), Query Frame = 2


Query: 2   LDVYRNLLSKLVQAKELLKEYVDREKKKRDERSGSQTANEAITKCLGEYSMQTGL 61
           LDVYRNLLSKLVQAKELLKEYVDREKKKRDER+GSQTANEAITKCLGEYSMQTGL
Sbjct: 244 LDVYRNLLSKLVQAKELLKEYVDREKKKRDERAGSQTANEAITKCLGEYSMQTGL 298

Query: 62   121
           
Sbjct: 304  298

Query: 122  167
           
Sbjct: 364  298

[Close]

BLAST of WMU04737 vs. NCBI nr
Match: gi|659110691|ref|XP_008455361.1| (PREDICTED: protein THYLAKOID FORMATION1, chloroplastic [Cucumis melo])

HSP 1 Score: 105.9 bits (263), Expect = 6.2e-20
Identity = 53/55 (96.36%), Postives = 55/55 (100.00%), Query Frame = 2


Query: 2   LDVYRNLLSKLVQAKELLKEYVDREKKKRDERSGSQTANEAITKCLGEYSMQTGL 61
           LDVYRNLLSKLVQAKELLKEY+DREKKKRDER+GSQTANEAITKCLGEYSMQTGL
Sbjct: 244 LDVYRNLLSKLVQAKELLKEYIDREKKKRDERAGSQTANEAITKCLGEYSMQTGL 298

Query: 62   121
           
Sbjct: 304  298

Query: 122  167
           
Sbjct: 364  298

[Close]

BLAST of WMU04737 vs. NCBI nr
Match: gi|695057951|ref|XP_009417272.1| (PREDICTED: protein THYLAKOID FORMATION1, chloroplastic-like [Musa acuminata subsp. malaccensis])

HSP 1 Score: 86.7 bits (213), Expect = 3.9e-14
Identity = 44/53 (83.02%), Postives = 48/53 (90.57%), Query Frame = 2


Query: 2   LDVYRNLLSKLVQAKELLKEYVDREKKKRDERSGSQTANEAITKCLGEYSMQT 61
           LDVYRNLLSKLVQAKELLKEYVDREKKKR+ERSG+Q ANEAITKC G++   T
Sbjct: 230 LDVYRNLLSKLVQAKELLKEYVDREKKKREERSGTQKANEAITKCTGDFRSVT 282

Query: 62   121
           
Sbjct: 290  282

Query: 122  161
           
Sbjct: 350  282

[Close]

BLAST of WMU04737 vs. NCBI nr
Match: gi|702244538|ref|XP_010051514.1| (PREDICTED: protein THYLAKOID FORMATION1, chloroplastic [Eucalyptus grandis])

HSP 1 Score: 86.3 bits (212), Expect = 5.1e-14
Identity = 44/49 (89.80%), Postives = 46/49 (93.88%), Query Frame = 2


Query: 2   LDVYRNLLSKLVQAKELLKEYVDREKKKRDERSGSQTANEAITKCLGEY 61
           LDVYRNLLSKLVQAKELLKEYVDREKKKR+ER  SQ ANEAITKC+GEY
Sbjct: 256 LDVYRNLLSKLVQAKELLKEYVDREKKKREERKESQKANEAITKCVGEY 304

Query: 62   121
           
Sbjct: 316  304

Query: 122  149
           
Sbjct: 376  304

[Close]

BLAST of WMU04737 vs. NCBI nr
Match: gi|720041318|ref|XP_010268869.1| (PREDICTED: protein THYLAKOID FORMATION1, chloroplastic-like [Nelumbo nucifera])

HSP 1 Score: 85.9 bits (211), Expect = 6.7e-14
Identity = 43/49 (87.76%), Postives = 47/49 (95.92%), Query Frame = 2


Query: 2   LDVYRNLLSKLVQAKELLKEYVDREKKKRDERSGSQTANEAITKCLGEY 61
           LDVYRNLLSKLVQAKELLKEYVDREKKKR+ER GSQ ANEAI+KC+GE+
Sbjct: 244 LDVYRNLLSKLVQAKELLKEYVDREKKKREERMGSQKANEAISKCVGEF 292

Query: 62   121
           
Sbjct: 304  292

Query: 122  149
           
Sbjct: 364  292

The following BLAST results are available for this feature:

BLAST of WMU04737 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G20890.1	1.7e-15	81.25	photosystem II reaction center PSB29 protein	[more]

BLAST of WMU04737 vs. Swiss-Prot


Match Name	E-value	Identity	Description
THF1_SOLTU	3.0e-14	81.63	Protein THYLAKOID FORMATION1, chloroplastic OS=Solanum tuberosum GN=THF1 PE=2 SV...	[more]
THF1_ARATH	3.0e-14	81.25	Protein THYLAKOID FORMATION 1, chloroplastic OS=Arabidopsis thaliana GN=THF1 PE=...	[more]
THF1_ORYSJ	3.6e-12	79.55	Protein THYLAKOID FORMATION1, chloroplastic OS=Oryza sativa subsp. japonica GN=T...	[more]

BLAST of WMU04737 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K3P0_CUCSA	5.1e-21	98.18	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G046130 PE=3 SV=1	[more]
M0TZM8_MUSAM	3.2e-15	83.02	Uncharacterized protein OS=Musa acuminata subsp. malaccensis PE=3 SV=1	[more]
A0A059DG08_EUCGR	4.2e-15	89.80	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_A01774 PE=3 SV=1	[more]
F6HHI1_VITVI	7.2e-15	89.80	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_12s0057g00020 PE=3 SV=...	[more]
V7BZ23_PHAVU	1.2e-14	91.67	Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_005G108600g PE=3 SV=1	[more]

BLAST of WMU04737 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449438054\|ref\|XP_004136805.1\|	4.8e-20	98.18	PREDICTED: protein THYLAKOID FORMATION1, chloroplastic [Cucumis sativus]	[more]
gi\|659110691\|ref\|XP_008455361.1\|	6.2e-20	96.36	PREDICTED: protein THYLAKOID FORMATION1, chloroplastic [Cucumis melo]	[more]
gi\|695057951\|ref\|XP_009417272.1\|	3.9e-14	83.02	PREDICTED: protein THYLAKOID FORMATION1, chloroplastic-like [Musa acuminata subs...	[more]
gi\|702244538\|ref\|XP_010051514.1\|	5.1e-14	89.80	PREDICTED: protein THYLAKOID FORMATION1, chloroplastic [Eucalyptus grandis]	[more]
gi\|720041318\|ref\|XP_010268869.1\|	6.7e-14	87.76	PREDICTED: protein THYLAKOID FORMATION1, chloroplastic-like [Nelumbo nucifera]	[more]

Annotated Terms

The following terms have been associated with this transcribed_cluster:

Vocabulary: **INTERPRO**
Term	Definition
IPR017499	Thf1

Vocabulary: **Biological Process**
Term	Definition
GO:0010207	photosystem II assembly
GO:0015979	photosynthesis

GO Annotation

GO Assignments

This transcribed_cluster is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015979	photosynthesis
biological_process	GO:0010207	photosystem II assembly

Relationships

This transcribed_cluster is associated with the following gene feature(s):


Feature Name	Unique Name	Type
Cla007720	Cla007720	gene

The following EST feature(s) are a part of this transcribed_cluster:


Feature Name	Unique Name	Type
S1_0127952	S1_0127952	EST
S2_0013573	S2_0013573	EST
S3_0087373	S3_0087373	EST
S3_0099348	S3_0099348	EST
S4_0053831	S4_0053831	EST
S4_0054858	S4_0054858	EST
S4_0063361	S4_0063361	EST
S4_0075265	S4_0075265	EST
S4_0084205	S4_0084205	EST

InterPro

Analysis Name: InterPro Annotations of watermelon unigene v2
Date Performed: 2016-11-16


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR017499	Protein Thf1	PFAM	PF11264	ThylakoidFormat	coord: 2..33 score: 1.
None	No IPR available	unknown	Coil	Coil	coord: 5..32 scor
None	No IPR available	PANTHER	PTHR34793	FAMILY NOT NAMED	coord: 2..55 score: 6.0
None	No IPR available	PANTHER	PTHR34793:SF1	PROTEIN THYLAKOID FORMATION 1, CHLOROPLASTIC	coord: 2..55 score: 6.0