Cla007419 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla007419
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Plastocyanin (AHRD V1 ***- D7KT97_ARALL); contains Interpro domain(s) IPR002387 Plastocyanin
Location	Chr5 : 23000400 .. 23000903 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCGCCGTCACCTCCGCCGCCGTTGCCATCCCCTCCTTCACCGGCCTCAAGTCCGCCGGCGCCACATCAAAACCCACCGCGGCCGTCCGCGTCTCCTCCCCTGCAACCCCAAAGCTGAGCATGAGAGCATCTCTGAAGGACGTGGGCGTGGCCGTGGCAGCCACCGCCGCCACCGCCCTGCTGGCCTCAAACGCCATGGCCATCGAGATCTTGCTGGGCGGCAACGACGGATCTCTGGCGTTCGTTCCGAACGATTTCTCGGTGGCGTCGGGTGAGAAAATCGTGTTCAAGAACAACGCGGGATTCCCACACAACGTGGTGTTCGATGAGGACGAAATCCCGAGCGGAGTGGACGCGGGAAAGATCTCGATGAGTGAGGAAGATCTTCTGAATGCTCCCGGCCAGGTGTACGAAGTCCAGCTAACTGAAAAAGGAAGCTACTCTTTCTACTGTTCGCCCCATCAAGGAGCTGGAATGGTCGGAAAGGTCACCGTTAACTGA

mRNA sequence

ATGGCCGCCGTCACCTCCGCCGCCGTTGCCATCCCCTCCTTCACCGGCCTCAAGTCCGCCGGCGCCACATCAAAACCCACCGCGGCCGTCCGCGTCTCCTCCCCTGCAACCCCAAAGCTGAGCATGAGAGCATCTCTGAAGGACGTGGGCGTGGCCGTGGCAGCCACCGCCGCCACCGCCCTGCTGGCCTCAAACGCCATGGCCATCGAGATCTTGCTGGGCGGCAACGACGGATCTCTGGCGTTCGTTCCGAACGATTTCTCGGTGGCGTCGGGTGAGAAAATCGTGTTCAAGAACAACGCGGGATTCCCACACAACGTGGTGTTCGATGAGGACGAAATCCCGAGCGGAGTGGACGCGGGAAAGATCTCGATGAGTGAGGAAGATCTTCTGAATGCTCCCGGCCAGGTGTACGAAGTCCAGCTAACTGAAAAAGGAAGCTACTCTTTCTACTGTTCGCCCCATCAAGGAGCTGGAATGGTCGGAAAGGTCACCGTTAACTGA

Coding sequence (CDS)

ATGGCCGCCGTCACCTCCGCCGCCGTTGCCATCCCCTCCTTCACCGGCCTCAAGTCCGCCGGCGCCACATCAAAACCCACCGCGGCCGTCCGCGTCTCCTCCCCTGCAACCCCAAAGCTGAGCATGAGAGCATCTCTGAAGGACGTGGGCGTGGCCGTGGCAGCCACCGCCGCCACCGCCCTGCTGGCCTCAAACGCCATGGCCATCGAGATCTTGCTGGGCGGCAACGACGGATCTCTGGCGTTCGTTCCGAACGATTTCTCGGTGGCGTCGGGTGAGAAAATCGTGTTCAAGAACAACGCGGGATTCCCACACAACGTGGTGTTCGATGAGGACGAAATCCCGAGCGGAGTGGACGCGGGAAAGATCTCGATGAGTGAGGAAGATCTTCTGAATGCTCCCGGCCAGGTGTACGAAGTCCAGCTAACTGAAAAAGGAAGCTACTCTTTCTACTGTTCGCCCCATCAAGGAGCTGGAATGGTCGGAAAGGTCACCGTTAACTGA

Protein sequence

MAAVTSAAVAIPSFTGLKSAGATSKPTAAVRVSSPATPKLSMRASLKDVGVAVAATAATALLASNAMAIEILLGGNDGSLAFVPNDFSVASGEKIVFKNNAGFPHNVVFDEDEIPSGVDAGKISMSEEDLLNAPGQVYEVQLTEKGSYSFYCSPHQGAGMVGKVTVN

Homology

[Close]

BLAST of Cla007419 vs. Swiss-Prot
Match: PLAS_SPIOL (Plastocyanin, chloroplastic OS=Spinacia oleracea GN=PETE PE=1 SV=2)

HSP 1 Score: 253.8 bits (647), Expect = 1.3e-66
Identity = 127/168 (75.60%), Postives = 144/168 (85.71%), Query Frame = 1


Query: 1   MAAV-TSAAVAIPSFTGLKSAGATSKPTAAVRVSSPATPKLSMRASLKDVGVAVAATAAT 60
           MA V +SAAVA+PSFTGLK++G+    TA +  ++ A P+LS++ASLK+VG AV ATAA 
Sbjct: 1   MATVASSAAVAVPSFTGLKASGSIKPTTAKIIPTTTAVPRLSVKASLKNVGAAVVATAAA 60

Query: 61  ALLASNAMAIEILLGGNDGSLAFVPNDFSVASGEKIVFKNNAGFPHNVVFDEDEIPSGVD 120
            LLA NAMA+E+LLGG DGSLAF+P DFSVASGE+IVFKNNAGFPHNVVFDEDEIPSGVD
Sbjct: 61  GLLAGNAMAVEVLLGGGDGSLAFLPGDFSVASGEEIVFKNNAGFPHNVVFDEDEIPSGVD 120

Query: 121 AGKISMSEEDLLNAPGQVYEVQLTEKGSYSFYCSPHQGAGMVGKVTVN 168
           A KISMSEEDLLNAPG+ Y+V LTEKG+Y FYCSPHQGAGMVGKVTVN
Sbjct: 121 AAKISMSEEDLLNAPGETYKVTLTEKGTYKFYCSPHQGAGMVGKVTVN 168

[Close]

BLAST of Cla007419 vs. Swiss-Prot
Match: PLAS1_POPNI (Plastocyanin A, chloroplastic OS=Populus nigra GN=PETE PE=1 SV=2)

HSP 1 Score: 248.1 bits (632), Expect = 7.0e-65
Identity = 122/168 (72.62%), Postives = 146/168 (86.90%), Query Frame = 1


Query: 1   MAAVTSAAVAIPSFTGLKSAGATS-KPTAAVRVSSPATPKLSMRASLKDVGVAVAATAAT 60
           MA VTSAAV+IPSFTGLK+  A++ K +A+ +VS+   P+LS++AS+KDVG AV ATAA+
Sbjct: 1   MATVTSAAVSIPSFTGLKAGSASNAKVSASAKVSASPLPRLSIKASMKDVGAAVVATAAS 60

Query: 61  ALLASNAMAIEILLGGNDGSLAFVPNDFSVASGEKIVFKNNAGFPHNVVFDEDEIPSGVD 120
           A++ASNAMAI++LLG +DGSLAFVP++FS++ GEKIVFKNNAGFPHN+VFDED IPSGVD
Sbjct: 61  AMIASNAMAIDVLLGADDGSLAFVPSEFSISPGEKIVFKNNAGFPHNIVFDEDSIPSGVD 120

Query: 121 AGKISMSEEDLLNAPGQVYEVQLTEKGSYSFYCSPHQGAGMVGKVTVN 168
           A KISMSEEDLLNA G+ +EV L+ KG YSFYCSPHQGAGMVGKVTVN
Sbjct: 121 ASKISMSEEDLLNAKGETFEVALSNKGEYSFYCSPHQGAGMVGKVTVN 168

[Close]

BLAST of Cla007419 vs. Swiss-Prot
Match: PLAS2_POPNI (Plastocyanin B, chloroplastic OS=Populus nigra GN=PETE PE=1 SV=2)

HSP 1 Score: 244.6 bits (623), Expect = 7.7e-64
Identity = 120/168 (71.43%), Postives = 147/168 (87.50%), Query Frame = 1


Query: 1   MAAVTSAAVAIPSFTGLKSAGATS-KPTAAVRVSSPATPKLSMRASLKDVGVAVAATAAT 60
           MAAVTSAAV+IPSFTGLK+A A++ K +A+ +VS+   P+LS++ASLK+VG AV ATAA+
Sbjct: 1   MAAVTSAAVSIPSFTGLKAASASNAKVSASAKVSASPLPRLSIKASLKEVGAAVVATAAS 60

Query: 61  ALLASNAMAIEILLGGNDGSLAFVPNDFSVASGEKIVFKNNAGFPHNVVFDEDEIPSGVD 120
           A++ASNAMA+++LLG +DGSLAFVP++FSV +GEKIVFKNNAGFPHNV+FDED +PSGVD
Sbjct: 61  AMIASNAMAVDVLLGADDGSLAFVPSEFSVPAGEKIVFKNNAGFPHNVLFDEDAVPSGVD 120

Query: 121 AGKISMSEEDLLNAPGQVYEVQLTEKGSYSFYCSPHQGAGMVGKVTVN 168
             KISMSEEDLLNA G+ +EV L++KG Y+FYCSPHQGAGMVGKV VN
Sbjct: 121 VSKISMSEEDLLNAKGETFEVALSDKGEYTFYCSPHQGAGMVGKVIVN 168

[Close]

BLAST of Cla007419 vs. Swiss-Prot
Match: PLAS2_ARATH (Plastocyanin major isoform, chloroplastic OS=Arabidopsis thaliana GN=DRT112 PE=1 SV=2)

HSP 1 Score: 243.8 bits (621), Expect = 1.3e-63
Identity = 118/167 (70.66%), Postives = 138/167 (82.63%), Query Frame = 1


Query: 1   MAAVTSAAVAIPSFTGLKSAGATSKPTAAVRVSSPATPKLSMRASLKDVGVAVAATAATA 60
           MA+VTSA VAIPSFTGLK++   S  T  ++ ++ A+PKL++++SLK+ GVA  A AA+ 
Sbjct: 1   MASVTSATVAIPSFTGLKASTIKSSATVRIQTAAVASPKLTVKSSLKNFGVAAVAAAASI 60

Query: 61  LLASNAMAIEILLGGNDGSLAFVPNDFSVASGEKIVFKNNAGFPHNVVFDEDEIPSGVDA 120
            LA NAMAIE+LLGG DGSLAF+PNDFS+A GEKIVFKNNAG+PHNVVFDEDEIPSGVD 
Sbjct: 61  ALAGNAMAIEVLLGGGDGSLAFIPNDFSIAKGEKIVFKNNAGYPHNVVFDEDEIPSGVDV 120

Query: 121 GKISMSEEDLLNAPGQVYEVQLTEKGSYSFYCSPHQGAGMVGKVTVN 168
            KISM E+DLLN  G+ YEV LTE G+YSFYC+PHQGAGMVGKVTVN
Sbjct: 121 AKISMDEQDLLNGAGETYEVALTEPGTYSFYCAPHQGAGMVGKVTVN 167

[Close]

BLAST of Cla007419 vs. Swiss-Prot
Match: PLAS_SOLLC (Plastocyanin, chloroplastic OS=Solanum lycopersicum GN=PETE PE=2 SV=1)

HSP 1 Score: 243.0 bits (619), Expect = 2.3e-63
Identity = 120/170 (70.59%), Postives = 144/170 (84.71%), Query Frame = 1


Query: 1   MAAVTSAAVAIPSFTGLKSAGATSKPT---AAVRVSSPATPKLSMRASLKDVGVAVAATA 60
           MA VTSAAVAIPSFTGLK+  ++S      A+ +V++    +L+++ASLKDVG  VAATA
Sbjct: 1   MATVTSAAVAIPSFTGLKAGASSSSRVSTGASAKVAAAPVARLTVKASLKDVGAVVAATA 60

Query: 61  ATALLASNAMAIEILLGGNDGSLAFVPNDFSVASGEKIVFKNNAGFPHNVVFDEDEIPSG 120
            +A+LASNAMA+E+LLGG+DGSLAF+P +FSV++GEKI FKNNAGFPHNVVFDEDEIP+G
Sbjct: 61  VSAMLASNAMALEVLLGGDDGSLAFIPGNFSVSAGEKITFKNNAGFPHNVVFDEDEIPAG 120

Query: 121 VDAGKISMSEEDLLNAPGQVYEVQLTEKGSYSFYCSPHQGAGMVGKVTVN 168
           VDA KISMSEEDLLNA G+ Y V L+EKG+Y+FYC+PHQGAGMVGKVTVN
Sbjct: 121 VDASKISMSEEDLLNAAGETYSVTLSEKGTYTFYCAPHQGAGMVGKVTVN 170

[Close]

BLAST of Cla007419 vs. TrEMBL
Match: A0A0A0LE99_CUCSA (Plastocyanin OS=Cucumis sativus GN=Csa_3G875430 PE=3 SV=1)

HSP 1 Score: 285.0 bits (728), Expect = 5.8e-74
Identity = 145/167 (86.83%), Postives = 159/167 (95.21%), Query Frame = 1


Query: 1   MAAVTSAAVAIPSFTGLKSAGATSKPTAAVRVSSPATPKLSMRASLKDVGVAVAATAATA 60
           MAAVTSAAVAIPSFTGLKS  ++SKPT+ +R+ SPA+PKL ++ASLKDVGVAVAATAA+A
Sbjct: 1   MAAVTSAAVAIPSFTGLKST-SSSKPTSLIRLPSPASPKLCIKASLKDVGVAVAATAASA 60

Query: 61  LLASNAMAIEILLGGNDGSLAFVPNDFSVASGEKIVFKNNAGFPHNVVFDEDEIPSGVDA 120
           LLASNAMAIEILLGG+DGSLAFVPN+F+VASGEKI FKNNAGFPHNVVFDEDEIPSGVD 
Sbjct: 61  LLASNAMAIEILLGGDDGSLAFVPNNFTVASGEKITFKNNAGFPHNVVFDEDEIPSGVDV 120

Query: 121 GKISMSEEDLLNAPGQVYEVQLTEKGSYSFYCSPHQGAGMVGKVTVN 168
           GKISM EE+LLNAPG+VYEVQLTEKGSYSFYCSPHQGAGMVGKVTVN
Sbjct: 121 GKISMDEENLLNAPGEVYEVQLTEKGSYSFYCSPHQGAGMVGKVTVN 166

[Close]

BLAST of Cla007419 vs. TrEMBL
Match: A0A067KPD8_JATCU (Plastocyanin OS=Jatropha curcas GN=JCGZ_08159 PE=3 SV=1)

HSP 1 Score: 263.8 bits (673), Expect = 1.4e-67
Identity = 132/168 (78.57%), Postives = 152/168 (90.48%), Query Frame = 1


Query: 1   MAAVTSAAVAIPSFTGLKSA-GATSKPTAAVRVSSPATPKLSMRASLKDVGVAVAATAAT 60
           MAAVTSAAV IPSFTGLK+A G T+K  A+V+ ++   P+LS++AS+KDVGVAV ATAA+
Sbjct: 1   MAAVTSAAVGIPSFTGLKAANGTTAKVNASVKPAACPVPRLSVKASMKDVGVAVVATAAS 60

Query: 61  ALLASNAMAIEILLGGNDGSLAFVPNDFSVASGEKIVFKNNAGFPHNVVFDEDEIPSGVD 120
           A+LASNAMA+E+LLGG+DGSLAFVP+DFSVA GE IVFKNNAGFPHNV+FDEDEIP GVD
Sbjct: 61  AILASNAMAVEVLLGGDDGSLAFVPSDFSVAPGETIVFKNNAGFPHNVIFDEDEIPGGVD 120

Query: 121 AGKISMSEEDLLNAPGQVYEVQLTEKGSYSFYCSPHQGAGMVGKVTVN 168
           A KISMSEEDLLNAPG+ Y+V LTEKGSY+FYCSPHQGAGMVGKVTVN
Sbjct: 121 ASKISMSEEDLLNAPGETYKVTLTEKGSYAFYCSPHQGAGMVGKVTVN 168

[Close]

BLAST of Cla007419 vs. TrEMBL
Match: I1JSY7_SOYBN (Plastocyanin OS=Glycine max GN=GLYMA_04G020300 PE=3 SV=1)

HSP 1 Score: 263.5 bits (672), Expect = 1.8e-67
Identity = 134/167 (80.24%), Postives = 151/167 (90.42%), Query Frame = 1


Query: 1   MAAVTSAAVAIPSFTGLKSAGATSKPTAAVRVSSPATPKLSMRASLKDVGVAVAATAATA 60
           MA VTSAAVAIPSFTGLK++    K +AAV+VS+P   +L ++ASLKDVGVAV ATAA+A
Sbjct: 1   MATVTSAAVAIPSFTGLKASAG--KVSAAVKVSAPQATRLGIKASLKDVGVAVVATAASA 60

Query: 61  LLASNAMAIEILLGGNDGSLAFVPNDFSVASGEKIVFKNNAGFPHNVVFDEDEIPSGVDA 120
           +LASNAMAIE+LLGG+DGSLAFVPN+FSVASGEKIVFKNNAGFPHNVVFDEDEIPSGVDA
Sbjct: 61  VLASNAMAIEVLLGGDDGSLAFVPNNFSVASGEKIVFKNNAGFPHNVVFDEDEIPSGVDA 120

Query: 121 GKISMSEEDLLNAPGQVYEVQLTEKGSYSFYCSPHQGAGMVGKVTVN 168
           GKISMS+EDLLNAPG+ Y V L  KG+YSF+CSPHQGAGMVGKVTVN
Sbjct: 121 GKISMSDEDLLNAPGETYSVTLDAKGTYSFFCSPHQGAGMVGKVTVN 165

[Close]

BLAST of Cla007419 vs. TrEMBL
Match: A0A0B2RGW1_GLYSO (Plastocyanin OS=Glycine soja GN=glysoja_013832 PE=3 SV=1)

HSP 1 Score: 263.5 bits (672), Expect = 1.8e-67
Identity = 134/167 (80.24%), Postives = 151/167 (90.42%), Query Frame = 1


Query: 1   MAAVTSAAVAIPSFTGLKSAGATSKPTAAVRVSSPATPKLSMRASLKDVGVAVAATAATA 60
           MA VTSAAVAIPSFTGLK++    K +AAV+VS+P   +L ++ASLKDVGVAV ATAA+A
Sbjct: 1   MATVTSAAVAIPSFTGLKASAG--KVSAAVKVSAPQATRLGIKASLKDVGVAVVATAASA 60

Query: 61  LLASNAMAIEILLGGNDGSLAFVPNDFSVASGEKIVFKNNAGFPHNVVFDEDEIPSGVDA 120
           +LASNAMAIE+LLGG+DGSLAFVPN+FSVASGEKIVFKNNAGFPHNVVFDEDEIPSGVDA
Sbjct: 61  VLASNAMAIEVLLGGDDGSLAFVPNNFSVASGEKIVFKNNAGFPHNVVFDEDEIPSGVDA 120

Query: 121 GKISMSEEDLLNAPGQVYEVQLTEKGSYSFYCSPHQGAGMVGKVTVN 168
           GKISMS+EDLLNAPG+ Y V L  KG+YSF+CSPHQGAGMVGKVTVN
Sbjct: 121 GKISMSDEDLLNAPGETYSVTLDAKGTYSFFCSPHQGAGMVGKVTVN 165

[Close]

BLAST of Cla007419 vs. TrEMBL
Match: B9R8G0_RICCO (Plastocyanin OS=Ricinus communis GN=RCOM_1599580 PE=3 SV=1)

HSP 1 Score: 263.5 bits (672), Expect = 1.8e-67
Identity = 131/168 (77.98%), Postives = 151/168 (89.88%), Query Frame = 1


Query: 1   MAAVTSAAVAIPSFTGLKSAGATS-KPTAAVRVSSPATPKLSMRASLKDVGVAVAATAAT 60
           MA VTSAAVAIPSFTGLK+A A S K  A+ +V++P+ P++S++AS+K+VGVAV ATAA+
Sbjct: 1   MATVTSAAVAIPSFTGLKAASAASTKVNASAKVAAPSLPRMSIKASMKEVGVAVMATAAS 60

Query: 61  ALLASNAMAIEILLGGNDGSLAFVPNDFSVASGEKIVFKNNAGFPHNVVFDEDEIPSGVD 120
           A+LASNAMAIEILLG +DG LAFVPN FSVA GEKIVFKNNAGFPHN+VFDEDE+PSGVD
Sbjct: 61  AMLASNAMAIEILLGSDDGGLAFVPNSFSVAPGEKIVFKNNAGFPHNIVFDEDEVPSGVD 120

Query: 121 AGKISMSEEDLLNAPGQVYEVQLTEKGSYSFYCSPHQGAGMVGKVTVN 168
           AGKISMSEEDLLN PG+ Y V LTEKG+YSFYC+PHQGAGMVGKVTVN
Sbjct: 121 AGKISMSEEDLLNGPGETYAVTLTEKGTYSFYCAPHQGAGMVGKVTVN 168

[Close]

BLAST of Cla007419 vs. NCBI nr
Match: gi|659132911|ref|XP_008466451.1| (PREDICTED: plastocyanin [Cucumis melo])

HSP 1 Score: 291.2 bits (744), Expect = 1.2e-75
Identity = 149/167 (89.22%), Postives = 163/167 (97.60%), Query Frame = 1


Query: 1   MAAVTSAAVAIPSFTGLKSAGATSKPTAAVRVSSPATPKLSMRASLKDVGVAVAATAATA 60
           MAAVTSAAVAIPSFTGLKS+ ++SKPT+A+R+ SPA+PKLS+RASLKDVGVAVAATAA+A
Sbjct: 1   MAAVTSAAVAIPSFTGLKSS-SSSKPTSAIRLPSPASPKLSVRASLKDVGVAVAATAASA 60

Query: 61  LLASNAMAIEILLGGNDGSLAFVPNDFSVASGEKIVFKNNAGFPHNVVFDEDEIPSGVDA 120
           LLASNAMAIEILLGG+DGSLAFVPN+F+VASGE IVFKNNAGFPHNVVFDEDEIPSGVDA
Sbjct: 61  LLASNAMAIEILLGGDDGSLAFVPNNFTVASGETIVFKNNAGFPHNVVFDEDEIPSGVDA 120

Query: 121 GKISMSEEDLLNAPGQVYEVQLTEKGSYSFYCSPHQGAGMVGKVTVN 168
           GKISM EE+LLNAPG+VYEVQLTEKGSYSFYCSPHQGAGMVGKVTVN
Sbjct: 121 GKISMDEENLLNAPGEVYEVQLTEKGSYSFYCSPHQGAGMVGKVTVN 166

[Close]

BLAST of Cla007419 vs. NCBI nr
Match: gi|449437172|ref|XP_004136366.1| (PREDICTED: plastocyanin [Cucumis sativus])

HSP 1 Score: 285.0 bits (728), Expect = 8.3e-74
Identity = 145/167 (86.83%), Postives = 159/167 (95.21%), Query Frame = 1


Query: 1   MAAVTSAAVAIPSFTGLKSAGATSKPTAAVRVSSPATPKLSMRASLKDVGVAVAATAATA 60
           MAAVTSAAVAIPSFTGLKS  ++SKPT+ +R+ SPA+PKL ++ASLKDVGVAVAATAA+A
Sbjct: 1   MAAVTSAAVAIPSFTGLKST-SSSKPTSLIRLPSPASPKLCIKASLKDVGVAVAATAASA 60

Query: 61  LLASNAMAIEILLGGNDGSLAFVPNDFSVASGEKIVFKNNAGFPHNVVFDEDEIPSGVDA 120
           LLASNAMAIEILLGG+DGSLAFVPN+F+VASGEKI FKNNAGFPHNVVFDEDEIPSGVD 
Sbjct: 61  LLASNAMAIEILLGGDDGSLAFVPNNFTVASGEKITFKNNAGFPHNVVFDEDEIPSGVDV 120

Query: 121 GKISMSEEDLLNAPGQVYEVQLTEKGSYSFYCSPHQGAGMVGKVTVN 168
           GKISM EE+LLNAPG+VYEVQLTEKGSYSFYCSPHQGAGMVGKVTVN
Sbjct: 121 GKISMDEENLLNAPGEVYEVQLTEKGSYSFYCSPHQGAGMVGKVTVN 166

[Close]

BLAST of Cla007419 vs. NCBI nr
Match: gi|470110096|ref|XP_004291323.1| (PREDICTED: plastocyanin [Fragaria vesca subsp. vesca])

HSP 1 Score: 269.2 bits (687), Expect = 4.7e-69
Identity = 134/167 (80.24%), Postives = 152/167 (91.02%), Query Frame = 1


Query: 1   MAAVTSAAVAIPSFTGLKSAGATSKPTAAVRVSSPATPKLSMRASLKDVGVAVAATAATA 60
           MA VT AAVAIPSFTGLKSAGAT     +V+VS+ + P++S+++SLK+VGVAVAATAA+A
Sbjct: 1   MATVTPAAVAIPSFTGLKSAGATKLVPTSVKVSAASVPRMSIKSSLKNVGVAVAATAASA 60

Query: 61  LLASNAMAIEILLGGNDGSLAFVPNDFSVASGEKIVFKNNAGFPHNVVFDEDEIPSGVDA 120
           LLASNA+AIEILLG +DGSLAFVPNDFSV++G+KIVFKNNAGFPHNVVFDEDEIP GVDA
Sbjct: 61  LLASNALAIEILLGASDGSLAFVPNDFSVSAGDKIVFKNNAGFPHNVVFDEDEIPGGVDA 120

Query: 121 GKISMSEEDLLNAPGQVYEVQLTEKGSYSFYCSPHQGAGMVGKVTVN 168
           GKISMSEEDLLNAPG+ Y V LTEKG+YSFYCSPHQGAGM GKVTVN
Sbjct: 121 GKISMSEEDLLNAPGETYSVTLTEKGTYSFYCSPHQGAGMAGKVTVN 167

[Close]

BLAST of Cla007419 vs. NCBI nr
Match: gi|802607282|ref|XP_012073717.1| (PREDICTED: plastocyanin [Jatropha curcas])

HSP 1 Score: 263.8 bits (673), Expect = 2.0e-67
Identity = 132/168 (78.57%), Postives = 152/168 (90.48%), Query Frame = 1


Query: 1   MAAVTSAAVAIPSFTGLKSA-GATSKPTAAVRVSSPATPKLSMRASLKDVGVAVAATAAT 60
           MAAVTSAAV IPSFTGLK+A G T+K  A+V+ ++   P+LS++AS+KDVGVAV ATAA+
Sbjct: 1   MAAVTSAAVGIPSFTGLKAANGTTAKVNASVKPAACPVPRLSVKASMKDVGVAVVATAAS 60

Query: 61  ALLASNAMAIEILLGGNDGSLAFVPNDFSVASGEKIVFKNNAGFPHNVVFDEDEIPSGVD 120
           A+LASNAMA+E+LLGG+DGSLAFVP+DFSVA GE IVFKNNAGFPHNV+FDEDEIP GVD
Sbjct: 61  AILASNAMAVEVLLGGDDGSLAFVPSDFSVAPGETIVFKNNAGFPHNVIFDEDEIPGGVD 120

Query: 121 AGKISMSEEDLLNAPGQVYEVQLTEKGSYSFYCSPHQGAGMVGKVTVN 168
           A KISMSEEDLLNAPG+ Y+V LTEKGSY+FYCSPHQGAGMVGKVTVN
Sbjct: 121 ASKISMSEEDLLNAPGETYKVTLTEKGSYAFYCSPHQGAGMVGKVTVN 168

[Close]

BLAST of Cla007419 vs. NCBI nr
Match: gi|255539076|ref|XP_002510603.1| (PREDICTED: plastocyanin B'/B'' [Ricinus communis])

HSP 1 Score: 263.5 bits (672), Expect = 2.6e-67
Identity = 131/168 (77.98%), Postives = 151/168 (89.88%), Query Frame = 1


Query: 1   MAAVTSAAVAIPSFTGLKSAGATS-KPTAAVRVSSPATPKLSMRASLKDVGVAVAATAAT 60
           MA VTSAAVAIPSFTGLK+A A S K  A+ +V++P+ P++S++AS+K+VGVAV ATAA+
Sbjct: 1   MATVTSAAVAIPSFTGLKAASAASTKVNASAKVAAPSLPRMSIKASMKEVGVAVMATAAS 60

Query: 61  ALLASNAMAIEILLGGNDGSLAFVPNDFSVASGEKIVFKNNAGFPHNVVFDEDEIPSGVD 120
           A+LASNAMAIEILLG +DG LAFVPN FSVA GEKIVFKNNAGFPHN+VFDEDE+PSGVD
Sbjct: 61  AMLASNAMAIEILLGSDDGGLAFVPNSFSVAPGEKIVFKNNAGFPHNIVFDEDEVPSGVD 120

Query: 121 AGKISMSEEDLLNAPGQVYEVQLTEKGSYSFYCSPHQGAGMVGKVTVN 168
           AGKISMSEEDLLN PG+ Y V LTEKG+YSFYC+PHQGAGMVGKVTVN
Sbjct: 121 AGKISMSEEDLLNGPGETYAVTLTEKGTYSFYCAPHQGAGMVGKVTVN 168

The following BLAST results are available for this feature:

BLAST of Cla007419 vs. Swiss-Prot


Match Name	E-value	Identity	Description
PLAS_SPIOL	1.3e-66	75.60	Plastocyanin, chloroplastic OS=Spinacia oleracea GN=PETE PE=1 SV=2	[more]
PLAS1_POPNI	7.0e-65	72.62	Plastocyanin A, chloroplastic OS=Populus nigra GN=PETE PE=1 SV=2	[more]
PLAS2_POPNI	7.7e-64	71.43	Plastocyanin B, chloroplastic OS=Populus nigra GN=PETE PE=1 SV=2	[more]
PLAS2_ARATH	1.3e-63	70.66	Plastocyanin major isoform, chloroplastic OS=Arabidopsis thaliana GN=DRT112 PE=1...	[more]
PLAS_SOLLC	2.3e-63	70.59	Plastocyanin, chloroplastic OS=Solanum lycopersicum GN=PETE PE=2 SV=1	[more]

BLAST of Cla007419 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LE99_CUCSA	5.8e-74	86.83	Plastocyanin OS=Cucumis sativus GN=Csa_3G875430 PE=3 SV=1	[more]
A0A067KPD8_JATCU	1.4e-67	78.57	Plastocyanin OS=Jatropha curcas GN=JCGZ_08159 PE=3 SV=1	[more]
I1JSY7_SOYBN	1.8e-67	80.24	Plastocyanin OS=Glycine max GN=GLYMA_04G020300 PE=3 SV=1	[more]
A0A0B2RGW1_GLYSO	1.8e-67	80.24	Plastocyanin OS=Glycine soja GN=glysoja_013832 PE=3 SV=1	[more]
B9R8G0_RICCO	1.8e-67	77.98	Plastocyanin OS=Ricinus communis GN=RCOM_1599580 PE=3 SV=1	[more]

BLAST of Cla007419 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659132911\|ref\|XP_008466451.1\|	1.2e-75	89.22	PREDICTED: plastocyanin [Cucumis melo]	[more]
gi\|449437172\|ref\|XP_004136366.1\|	8.3e-74	86.83	PREDICTED: plastocyanin [Cucumis sativus]	[more]
gi\|470110096\|ref\|XP_004291323.1\|	4.7e-69	80.24	PREDICTED: plastocyanin [Fragaria vesca subsp. vesca]	[more]
gi\|802607282\|ref\|XP_012073717.1\|	2.0e-67	78.57	PREDICTED: plastocyanin [Jatropha curcas]	[more]
gi\|255539076\|ref\|XP_002510603.1\|	2.6e-67	77.98	PREDICTED: plastocyanin B'/B'' [Ricinus communis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR000923	BlueCu_1
IPR001235	Copper_blue_Plastocyanin
IPR002387	Plastocyanin
IPR008972	Cupredoxin

Vocabulary: **Molecular Function**
Term	Definition
GO:0005507	copper ion binding
GO:0009055	electron carrier activity

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0043481	anthocyanin accumulation in tissues in response to UV light
biological_process	GO:0010155	regulation of proton transport
biological_process	GO:0022900	electron transport chain
biological_process	GO:0008150	biological_process
biological_process	GO:0055114	oxidation-reduction process
biological_process	GO:0048767	root hair elongation
biological_process	GO:0009744	response to sucrose
biological_process	GO:0010114	response to red light
biological_process	GO:0009644	response to high light intensity
biological_process	GO:0009932	cell tip growth
biological_process	GO:0046686	response to cadmium ion
biological_process	GO:0009637	response to blue light
biological_process	GO:0010218	response to far red light
biological_process	GO:0010817	regulation of hormone levels
biological_process	GO:0019344	cysteine biosynthetic process
biological_process	GO:0000271	polysaccharide biosynthetic process
biological_process	GO:0009657	plastid organization
biological_process	GO:0006098	pentose-phosphate shunt
biological_process	GO:0017148	negative regulation of translation
biological_process	GO:0009825	multidimensional cell growth
biological_process	GO:0009965	leaf morphogenesis
biological_process	GO:0042744	hydrogen peroxide catabolic process
biological_process	GO:0071555	cell wall organization
biological_process	GO:0045893	positive regulation of transcription, DNA-templated
biological_process	GO:0055070	copper ion homeostasis
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0055035	plastid thylakoid membrane
cellular_component	GO:0031977	thylakoid lumen
cellular_component	GO:0009534	chloroplast thylakoid
cellular_component	GO:0009570	chloroplast stroma
cellular_component	GO:0009507	chloroplast
molecular_function	GO:0009055	electron carrier activity
molecular_function	GO:0005507	copper ion binding

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
WMU05460	watermelon unigene v2 vs TrEMBL	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla007419	Cla007419.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
WMU05460	WMU05460	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000923	Blue (type 1) copper domain	PFAM	PF00127	Copper-bind	coord: 70..167 score: 6.3
IPR001235	Blue (type 1) copper protein, plastocyanin-type	PRINTS	PR00156	COPPERBLUE	coord: 144..158 score: 6.4E-14coord: 88..101 score: 6.4E-14coord: 103..118 score: 6.4
IPR002387	Plastocyanin	PRINTS	PR00157	PLASTOCYANIN	coord: 74..93 score: 1.1E-33coord: 97..115 score: 1.1E-33coord: 146..165 score: 1.1
IPR002387	Plastocyanin	TIGRFAMs	TIGR02656	TIGR02656	coord: 69..167 score: 1.8
IPR008972	Cupredoxin	GENE3D	G3DSA:2.60.40.420		coord: 71..167 score: 1.0
IPR008972	Cupredoxin	unknown	SSF49503	Cupredoxins	coord: 66..167 score: 8.57
None	No IPR available	PANTHER	PTHR34192	FAMILY NOT NAMED	coord: 1..167 score: 1.5
None	No IPR available	PANTHER	PTHR34192:SF2	PLASTOCYANIN MAJOR ISOFORM, CHLOROPLASTIC-RELATED	coord: 1..167 score: 1.5

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla007419	Cla97C05G096440	Watermelon (97103) v2	wmwmbB207
Cla007419	Csa3G875430	Cucumber (Chinese Long) v2	cuwmB250
Cla007419	MELO3C003725	Melon (DHL92) v3.5.1	mewmB369
Cla007419	ClCG05G015390	Watermelon (Charleston Gray)	wcgwmB285
Cla007419	CSPI03G43700	Wild cucumber (PI 183967)	cpiwmB249
Cla007419	Cucsa.343280	Cucumber (Gy14) v1	cgywmB616
Cla007419	CmaCh09G000820	Cucurbita maxima (Rimu)	cmawmB029
Cla007419	CmoCh09G000810	Cucurbita moschata (Rifu)	cmowmB021
Cla007419	Lsi04G017810	Bottle gourd (USVL1VR-Ls)	lsiwmB319
Cla007419	Cp4.1LG06g00360	Cucurbita pepo (Zucchini)	cpewmB768
Cla007419	CsGy3G041220	Cucumber (Gy14) v2	cgybwmB235
Cla007419	MELO3C003725.2	Melon (DHL92) v3.6.1	medwmB365
Cla007419	Carg08654	Silver-seed gourd	carwmB0103
Cla007419	CsaV3_3G046150	Cucumber (Chinese Long) v3	cucwmB258

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla007419	Cucurbita maxima (Rimu)	cmawmB444
Cla007419	Cucurbita moschata (Rifu)	cmowmB437
Cla007419	Cucurbita pepo (Zucchini)	cpewmB563