WMU05460 (transcribed_cluster) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	WMU05460
Type	transcribed_cluster
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Plastocyanin
Location	Chr5 : 23000705 .. 23000982 (+)
Sequence length	285

Genome Viewer

Sequences

The following sequences are available for this feature:

transcribed_cluster sequence

ATTCCCACACAACGTGGTGTTCGATGAGGACGAAATCCCGAGCGGAGTGGACGCGGGAAAGATCTCGATGAGTGAGGAAGATCTTCTGAATGCTCCCGGCCAGGTGTACGAAGTCCAGCTAACTGAAAAAGGAAGCTACTCTTTCTACTGTTCGCCCCATCAAGGAGCTGGAATGGTCGGAAAGGGTCACCGTTAACTGATCCATTCATTAATTCCTCCTCTTCCAATTTTTTCCCCTGTAATGTTCATCTTTTTTTTTTAATATATATAATAAATTAAAGTGAT

Library


Library category	ESTs
watermelon fruit 18d library	2
watermelon fruit 34d library	1

Homology

[Close]

BLAST of WMU05460 vs. TAIR10
Match: AT1G20340.1 (AT1G20340.1 Cupredoxin superfamily protein)

HSP 1 Score: 107.8 bits (268), Expect = 3.6e-24
Identity = 48/61 (78.69%), Postives = 51/61 (83.61%), Query Frame = 2


Query: 2   FPHNVVFDEDEIPSGVDAGKISMSEEDLLNAPGQVYEVQLTEKGSYSFYCSPHQGAGMVG 61
           +PHNVVFDEDEIPSGVD  KISM E+DLLN  G+ YEV LTE G+YSFYC+PHQGAGMVG
Sbjct: 103 YPHNVVFDEDEIPSGVDVAKISMDEQDLLNGAGETYEVALTEPGTYSFYCAPHQGAGMVG 162

Query: 62  K 121
           K
Sbjct: 163 K 163

Query: 122  181
           
Sbjct: 223  163

Query: 182  185
           
Sbjct: 283  163

[Close]

BLAST of WMU05460 vs. TAIR10
Match: AT1G76100.1 (AT1G76100.1 plastocyanin 1)

HSP 1 Score: 105.9 bits (263), Expect = 1.4e-23
Identity = 49/61 (80.33%), Postives = 49/61 (80.33%), Query Frame = 2


Query: 2   FPHNVVFDEDEIPSGVDAGKISMSEEDLLNAPGQVYEVQLTEKGSYSFYCSPHQGAGMVG 61
           FPHNVVFDEDEIPSGVDA KISM E  LLN  G+ YEV LTE GSY FYC+PHQGAGMVG
Sbjct: 107 FPHNVVFDEDEIPSGVDASKISMDETALLNGAGETYEVTLTEPGSYGFYCAPHQGAGMVG 166

Query: 62  K 121
           K
Sbjct: 167 K 167

Query: 122  181
           
Sbjct: 227  167

Query: 182  185
           
Sbjct: 287  167

[Close]

BLAST of WMU05460 vs. Swiss-Prot
Match: PLAS_CUCSA (Plastocyanin OS=Cucumis sativus GN=PETE PE=1 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 3.9e-28
Identity = 54/61 (88.52%), Postives = 59/61 (96.72%), Query Frame = 2


Query: 2   FPHNVVFDEDEIPSGVDAGKISMSEEDLLNAPGQVYEVQLTEKGSYSFYCSPHQGAGMVG 61
           FPHNVVFDEDEIPSGVD+GKISM+EEDLL+APG+VY+V+LT+KGSYSFYCSPHQGAGMVG
Sbjct: 35  FPHNVVFDEDEIPSGVDSGKISMNEEDLLBAPGZVYZVZLTZKGSYSFYCSPHQGAGMVG 94

Query: 62  K 121
           K
Sbjct: 95  K 95

Query: 122  181
           
Sbjct: 155  95

Query: 182  185
           
Sbjct: 215  95

[Close]

BLAST of WMU05460 vs. Swiss-Prot
Match: PLAS_CUCPE (Plastocyanin OS=Cucurbita pepo GN=PETE PE=1 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 8.6e-28
Identity = 57/61 (93.44%), Postives = 58/61 (95.08%), Query Frame = 2


Query: 2   FPHNVVFDEDEIPSGVDAGKISMSEEDLLNAPGQVYEVQLTEKGSYSFYCSPHQGAGMVG 61
           FPHNVVFDEDEIPSGVDAGKISM+EEDLLNAPG+VY+V LTEKGSYSFYCSPHQGAGMVG
Sbjct: 35  FPHNVVFDEDEIPSGVDAGKISMNEEDLLNAPGEVYKVNLTEKGSYSFYCSPHQGAGMVG 94

Query: 62  K 121
           K
Sbjct: 95  K 95

Query: 122  181
           
Sbjct: 155  95

Query: 182  185
           
Sbjct: 215  95

[Close]

BLAST of WMU05460 vs. Swiss-Prot
Match: PLAS_SPIOL (Plastocyanin, chloroplastic OS=Spinacia oleracea GN=PETE PE=1 SV=2)

HSP 1 Score: 118.2 bits (295), Expect = 4.7e-26
Identity = 54/61 (88.52%), Postives = 55/61 (90.16%), Query Frame = 2


Query: 2   FPHNVVFDEDEIPSGVDAGKISMSEEDLLNAPGQVYEVQLTEKGSYSFYCSPHQGAGMVG 61
           FPHNVVFDEDEIPSGVDA KISMSEEDLLNAPG+ Y+V LTEKG+Y FYCSPHQGAGMVG
Sbjct: 104 FPHNVVFDEDEIPSGVDAAKISMSEEDLLNAPGETYKVTLTEKGTYKFYCSPHQGAGMVG 163

Query: 62  K 121
           K
Sbjct: 164 K 164

Query: 122  181
           
Sbjct: 224  164

Query: 182  185
           
Sbjct: 284  164

[Close]

BLAST of WMU05460 vs. Swiss-Prot
Match: PLAS_LACSA (Plastocyanin OS=Lactuca sativa GN=PETE PE=1 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 1.4e-25
Identity = 53/61 (86.89%), Postives = 55/61 (90.16%), Query Frame = 2


Query: 2   FPHNVVFDEDEIPSGVDAGKISMSEEDLLNAPGQVYEVQLTEKGSYSFYCSPHQGAGMVG 61
           FPHNVVFDEDEIP+GVDA KISMSEEDLLNAPG+ Y V LTEKG+YSFYC+PHQGAGMVG
Sbjct: 35  FPHNVVFDEDEIPAGVDASKISMSEEDLLNAPGETYAVTLTEKGTYSFYCAPHQGAGMVG 94

Query: 62  K 121
           K
Sbjct: 95  K 95

Query: 122  181
           
Sbjct: 155  95

Query: 182  185
           
Sbjct: 215  95

[Close]

BLAST of WMU05460 vs. Swiss-Prot
Match: PLAS_MERPE (Plastocyanin OS=Mercurialis perennis GN=PETE PE=1 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 1.8e-25
Identity = 54/61 (88.52%), Postives = 53/61 (86.89%), Query Frame = 2


Query: 2   FPHNVVFDEDEIPSGVDAGKISMSEEDLLNAPGQVYEVQLTEKGSYSFYCSPHQGAGMVG 61
           FPHNVVFDEDEIPSGVDA KISM E DLLNAPG+ Y V LTEKGSYSFYCSPHQGAGMVG
Sbjct: 35  FPHNVVFDEDEIPSGVDASKISMDEADLLNAPGETYAVTLTEKGSYSFYCSPHQGAGMVG 94

Query: 62  K 121
           K
Sbjct: 95  K 95

Query: 122  181
           
Sbjct: 155  95

Query: 182  185
           
Sbjct: 215  95

[Close]

BLAST of WMU05460 vs. TrEMBL
Match: A0A0A0LE99_CUCSA (Plastocyanin OS=Cucumis sativus GN=Csa_3G875430 PE=3 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 1.2e-25
Identity = 57/61 (93.44%), Postives = 59/61 (96.72%), Query Frame = 2


Query: 2   FPHNVVFDEDEIPSGVDAGKISMSEEDLLNAPGQVYEVQLTEKGSYSFYCSPHQGAGMVG 61
           FPHNVVFDEDEIPSGVD GKISM EE+LLNAPG+VYEVQLTEKGSYSFYCSPHQGAGMVG
Sbjct: 102 FPHNVVFDEDEIPSGVDVGKISMDEENLLNAPGEVYEVQLTEKGSYSFYCSPHQGAGMVG 161

Query: 62  K 121
           K
Sbjct: 162 K 162

Query: 122  181
           
Sbjct: 222  162

Query: 182  185
           
Sbjct: 282  162

[Close]

BLAST of WMU05460 vs. TrEMBL
Match: E0CQV6_VITVI (Plastocyanin OS=Vitis vinifera GN=VIT_18s0001g00760 PE=3 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 3.1e-24
Identity = 54/61 (88.52%), Postives = 57/61 (93.44%), Query Frame = 2


Query: 2   FPHNVVFDEDEIPSGVDAGKISMSEEDLLNAPGQVYEVQLTEKGSYSFYCSPHQGAGMVG 61
           FPHNVVFDEDE+PSGVD  KISMSEEDLLNAPG+VY V LTEKG+YSFYCSPHQGAGMVG
Sbjct: 104 FPHNVVFDEDEVPSGVDVSKISMSEEDLLNAPGEVYSVTLTEKGTYSFYCSPHQGAGMVG 163

Query: 62  K 121
           K
Sbjct: 164 K 164

Query: 122  181
           
Sbjct: 224  164

Query: 182  185
           
Sbjct: 284  164

[Close]

BLAST of WMU05460 vs. TrEMBL
Match: A5ALX7_VITVI (Plastocyanin OS=Vitis vinifera GN=VITISV_038998 PE=3 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 3.1e-24
Identity = 54/61 (88.52%), Postives = 57/61 (93.44%), Query Frame = 2


Query: 2   FPHNVVFDEDEIPSGVDAGKISMSEEDLLNAPGQVYEVQLTEKGSYSFYCSPHQGAGMVG 61
           FPHNVVFDEDE+PSGVD  KISMSEEDLLNAPG+VY V LTEKG+YSFYCSPHQGAGMVG
Sbjct: 104 FPHNVVFDEDEVPSGVDVSKISMSEEDLLNAPGEVYSVTLTEKGTYSFYCSPHQGAGMVG 163

Query: 62  K 121
           K
Sbjct: 164 K 164

Query: 122  181
           
Sbjct: 224  164

Query: 182  185
           
Sbjct: 284  164

[Close]

BLAST of WMU05460 vs. TrEMBL
Match: A0A0V0RCP2_9BILA (Plastocyanin (Fragment) OS=Trichinella nelsoni GN=PETE PE=4 SV=1)

HSP 1 Score: 118.6 bits (296), Expect = 4.0e-24
Identity = 54/61 (88.52%), Postives = 56/61 (91.80%), Query Frame = 2


Query: 2   FPHNVVFDEDEIPSGVDAGKISMSEEDLLNAPGQVYEVQLTEKGSYSFYCSPHQGAGMVG 61
           FPHNVVFDEDEIP GVDAGKISMSEEDLLNAPG+ Y V LTEKG+YSFYCSPHQGAGM G
Sbjct: 37  FPHNVVFDEDEIPGGVDAGKISMSEEDLLNAPGETYSVTLTEKGTYSFYCSPHQGAGMAG 96

Query: 62  K 121
           K
Sbjct: 97  K 97

Query: 122  181
           
Sbjct: 157  97

Query: 182  185
           
Sbjct: 217  97

[Close]

BLAST of WMU05460 vs. TrEMBL
Match: M5XH36_PRUPE (Plastocyanin OS=Prunus persica GN=PRUPE_ppa012521mg PE=3 SV=1)

HSP 1 Score: 118.6 bits (296), Expect = 4.0e-24
Identity = 52/61 (85.25%), Postives = 57/61 (93.44%), Query Frame = 2


Query: 2   FPHNVVFDEDEIPSGVDAGKISMSEEDLLNAPGQVYEVQLTEKGSYSFYCSPHQGAGMVG 61
           FPHN+VFDEDEIPSGVDAGKISM EEDLLNAPG+ Y + LTEKGSY+FYCSPHQGAGM+G
Sbjct: 102 FPHNIVFDEDEIPSGVDAGKISMGEEDLLNAPGETYAITLTEKGSYAFYCSPHQGAGMIG 161

Query: 62  K 121
           K
Sbjct: 162 K 162

Query: 122  181
           
Sbjct: 222  162

Query: 182  185
           
Sbjct: 282  162

[Close]

BLAST of WMU05460 vs. NCBI nr
Match: gi|130266|sp|P00293.1|PLAS_CUCSA (RecName: Full=Plastocyanin)

HSP 1 Score: 125.2 bits (313), Expect = 6.2e-26
Identity = 54/61 (88.52%), Postives = 61/61 (100.00%), Query Frame = 2


Query: 2   FPHNVVFDEDEIPSGVDAGKISMSEEDLLNAPGQVYEVQLTEKGSYSFYCSPHQGAGMVG 61
           FPHNVVFDEDEIPSGVD+GKISM+EEDLL+APG+VY+V+LT+KGSYSFYCSPHQGAGMVG
Sbjct: 35  FPHNVVFDEDEIPSGVDSGKISMNEEDLLBAPGZVYZVZLTZKGSYSFYCSPHQGAGMVG 94

Query: 62  K 121
           K
Sbjct: 95  K 95

Query: 122  181
           
Sbjct: 155  95

Query: 182  185
           
Sbjct: 215  95

[Close]

BLAST of WMU05460 vs. NCBI nr
Match: gi|659132911|ref|XP_008466451.1| (PREDICTED: plastocyanin [Cucumis melo])

HSP 1 Score: 125.2 bits (313), Expect = 6.2e-26
Identity = 58/61 (95.08%), Postives = 60/61 (98.36%), Query Frame = 2


Query: 2   FPHNVVFDEDEIPSGVDAGKISMSEEDLLNAPGQVYEVQLTEKGSYSFYCSPHQGAGMVG 61
           FPHNVVFDEDEIPSGVDAGKISM EE+LLNAPG+VYEVQLTEKGSYSFYCSPHQGAGMVG
Sbjct: 102 FPHNVVFDEDEIPSGVDAGKISMDEENLLNAPGEVYEVQLTEKGSYSFYCSPHQGAGMVG 161

Query: 62  K 121
           K
Sbjct: 162 K 162

Query: 122  181
           
Sbjct: 222  162

Query: 182  185
           
Sbjct: 282  162

[Close]

BLAST of WMU05460 vs. NCBI nr
Match: gi|130265|sp|P00292.1|PLAS_CUCPE (RecName: Full=Plastocyanin)

HSP 1 Score: 124.0 bits (310), Expect = 1.4e-25
Identity = 57/61 (93.44%), Postives = 60/61 (98.36%), Query Frame = 2


Query: 2   FPHNVVFDEDEIPSGVDAGKISMSEEDLLNAPGQVYEVQLTEKGSYSFYCSPHQGAGMVG 61
           FPHNVVFDEDEIPSGVDAGKISM+EEDLLNAPG+VY+V LTEKGSYSFYCSPHQGAGMVG
Sbjct: 35  FPHNVVFDEDEIPSGVDAGKISMNEEDLLNAPGEVYKVNLTEKGSYSFYCSPHQGAGMVG 94

Query: 62  K 121
           K
Sbjct: 95  K 95

Query: 122  181
           
Sbjct: 155  95

Query: 182  185
           
Sbjct: 215  95

[Close]

BLAST of WMU05460 vs. NCBI nr
Match: gi|449437172|ref|XP_004136366.1| (PREDICTED: plastocyanin [Cucumis sativus])

HSP 1 Score: 123.6 bits (309), Expect = 1.8e-25
Identity = 57/61 (93.44%), Postives = 59/61 (96.72%), Query Frame = 2


Query: 2   FPHNVVFDEDEIPSGVDAGKISMSEEDLLNAPGQVYEVQLTEKGSYSFYCSPHQGAGMVG 61
           FPHNVVFDEDEIPSGVD GKISM EE+LLNAPG+VYEVQLTEKGSYSFYCSPHQGAGMVG
Sbjct: 102 FPHNVVFDEDEIPSGVDVGKISMDEENLLNAPGEVYEVQLTEKGSYSFYCSPHQGAGMVG 161

Query: 62  K 121
           K
Sbjct: 162 K 162

Query: 122  181
           
Sbjct: 222  162

Query: 182  185
           
Sbjct: 282  162

[Close]

BLAST of WMU05460 vs. NCBI nr
Match: gi|694316574|ref|XP_009334523.1| (PREDICTED: plastocyanin [Pyrus x bretschneideri])

HSP 1 Score: 121.7 bits (304), Expect = 6.8e-25
Identity = 55/61 (90.16%), Postives = 58/61 (95.08%), Query Frame = 2


Query: 2   FPHNVVFDEDEIPSGVDAGKISMSEEDLLNAPGQVYEVQLTEKGSYSFYCSPHQGAGMVG 61
           FPHN+VFDEDE+PSGVDAGKISMSEEDLLNAPG+ Y V LTEKGSYSFYCSPHQGAGMVG
Sbjct: 102 FPHNIVFDEDEVPSGVDAGKISMSEEDLLNAPGETYAVTLTEKGSYSFYCSPHQGAGMVG 161

Query: 62  K 121
           K
Sbjct: 162 K 162

Query: 122  181
           
Sbjct: 222  162

Query: 182  185
           
Sbjct: 282  162

The following BLAST results are available for this feature:

BLAST of WMU05460 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G20340.1	3.6e-24	78.69	Cupredoxin superfamily protein	[more]
AT1G76100.1	1.4e-23	80.33	plastocyanin 1	[more]

BLAST of WMU05460 vs. Swiss-Prot


Match Name	E-value	Identity	Description
PLAS_CUCSA	3.9e-28	88.52	Plastocyanin OS=Cucumis sativus GN=PETE PE=1 SV=1	[more]
PLAS_CUCPE	8.6e-28	93.44	Plastocyanin OS=Cucurbita pepo GN=PETE PE=1 SV=1	[more]
PLAS_SPIOL	4.7e-26	88.52	Plastocyanin, chloroplastic OS=Spinacia oleracea GN=PETE PE=1 SV=2	[more]
PLAS_LACSA	1.4e-25	86.89	Plastocyanin OS=Lactuca sativa GN=PETE PE=1 SV=1	[more]
PLAS_MERPE	1.8e-25	88.52	Plastocyanin OS=Mercurialis perennis GN=PETE PE=1 SV=1	[more]

BLAST of WMU05460 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LE99_CUCSA	1.2e-25	93.44	Plastocyanin OS=Cucumis sativus GN=Csa_3G875430 PE=3 SV=1	[more]
E0CQV6_VITVI	3.1e-24	88.52	Plastocyanin OS=Vitis vinifera GN=VIT_18s0001g00760 PE=3 SV=1	[more]
A5ALX7_VITVI	3.1e-24	88.52	Plastocyanin OS=Vitis vinifera GN=VITISV_038998 PE=3 SV=1	[more]
A0A0V0RCP2_9BILA	4.0e-24	88.52	Plastocyanin (Fragment) OS=Trichinella nelsoni GN=PETE PE=4 SV=1	[more]
M5XH36_PRUPE	4.0e-24	85.25	Plastocyanin OS=Prunus persica GN=PRUPE_ppa012521mg PE=3 SV=1	[more]

BLAST of WMU05460 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|130266\|sp\|P00293.1\|PLAS_CUCSA	6.2e-26	88.52	RecName: Full=Plastocyanin	[more]
gi\|659132911\|ref\|XP_008466451.1\|	6.2e-26	95.08	PREDICTED: plastocyanin [Cucumis melo]	[more]
gi\|130265\|sp\|P00292.1\|PLAS_CUCPE	1.4e-25	93.44	RecName: Full=Plastocyanin	[more]
gi\|449437172\|ref\|XP_004136366.1\|	1.8e-25	93.44	PREDICTED: plastocyanin [Cucumis sativus]	[more]
gi\|694316574\|ref\|XP_009334523.1\|	6.8e-25	90.16	PREDICTED: plastocyanin [Pyrus x bretschneideri]	[more]

Relationships

This transcribed_cluster is associated with the following gene feature(s):


Feature Name	Unique Name	Type
Cla007419	Cla007419	gene

The following EST feature(s) are a part of this transcribed_cluster:


Feature Name	Unique Name	Type
S2_0116908	S2_0116908	EST
S2_0131868	S2_0131868	EST
S4_0027053	S4_0027053	EST