Carg08654 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg08654
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Plastocyanin
Location	Cucurbita_argyrosperma_scaffold_057 : 355272 .. 355775 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCACCGTCACCTCCGCCACCGTTGCCATCCCCTCCTTCACCGGCCTCAAGTCCTCCGCCACCGCTTCCAAATCCACCTCCGCCGTCCGCGTCTCCTCCCCCGCGGTCCCCAAGCTGACCGTCAGAGCCTCTCTGAAGGACGTTGGCGTGGCCGTGGCCGCCACCGCCGCCAGTGCCCTCCTGGCCTCAAACGCCTTGGCCATTGAGGTCTTGCTAGGCGGCGACGACGGATCTCTAGCCTTCATTCCAAACGATTTCTCGGTGGCGGCCGGGGAGAAAATCGTGTTCAAGAACAACGCGGGTTTCCCACACAACGTGGTGTTCGACGAGGACGAAATCCCAAGCGGAGTGGACGCCGGCAAGATCTCGATGAACGAGGAAGATCTTCTCAACGCCGCCGGCGAGGTCTACGAAGTCAATCTCACCGAGAAAGGAAGCTACTCCTTCTACTGTTCGCCACATCAAGGAGCTGGAATGGTCGGCAAAGTCACCGTTAACTGA

mRNA sequence

ATGGCCACCGTCACCTCCGCCACCGTTGCCATCCCCTCCTTCACCGGCCTCAAGTCCTCCGCCACCGCTTCCAAATCCACCTCCGCCGTCCGCGTCTCCTCCCCCGCGGTCCCCAAGCTGACCGTCAGAGCCTCTCTGAAGGACGTTGGCGTGGCCGTGGCCGCCACCGCCGCCAGTGCCCTCCTGGCCTCAAACGCCTTGGCCATTGAGGTCTTGCTAGGCGGCGACGACGGATCTCTAGCCTTCATTCCAAACGATTTCTCGGTGGCGGCCGGGGAGAAAATCGTGTTCAAGAACAACGCGGGTTTCCCACACAACGTGGTGTTCGACGAGGACGAAATCCCAAGCGGAGTGGACGCCGGCAAGATCTCGATGAACGAGGAAGATCTTCTCAACGCCGCCGGCGAGGTCTACGAAGTCAATCTCACCGAGAAAGGAAGCTACTCCTTCTACTGTTCGCCACATCAAGGAGCTGGAATGGTCGGCAAAGTCACCGTTAACTGA

Coding sequence (CDS)

ATGGCCACCGTCACCTCCGCCACCGTTGCCATCCCCTCCTTCACCGGCCTCAAGTCCTCCGCCACCGCTTCCAAATCCACCTCCGCCGTCCGCGTCTCCTCCCCCGCGGTCCCCAAGCTGACCGTCAGAGCCTCTCTGAAGGACGTTGGCGTGGCCGTGGCCGCCACCGCCGCCAGTGCCCTCCTGGCCTCAAACGCCTTGGCCATTGAGGTCTTGCTAGGCGGCGACGACGGATCTCTAGCCTTCATTCCAAACGATTTCTCGGTGGCGGCCGGGGAGAAAATCGTGTTCAAGAACAACGCGGGTTTCCCACACAACGTGGTGTTCGACGAGGACGAAATCCCAAGCGGAGTGGACGCCGGCAAGATCTCGATGAACGAGGAAGATCTTCTCAACGCCGCCGGCGAGGTCTACGAAGTCAATCTCACCGAGAAAGGAAGCTACTCCTTCTACTGTTCGCCACATCAAGGAGCTGGAATGGTCGGCAAAGTCACCGTTAACTGA

Protein sequence

MATVTSATVAIPSFTGLKSSATASKSTSAVRVSSPAVPKLTVRASLKDVGVAVAATAASALLASNALAIEVLLGGDDGSLAFIPNDFSVAAGEKIVFKNNAGFPHNVVFDEDEIPSGVDAGKISMNEEDLLNAAGEVYEVNLTEKGSYSFYCSPHQGAGMVGKVTVN

Homology

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BLAST of Carg08654 vs. NCBI nr
Match: XP_023534891.1 (plastocyanin [Cucurbita pepo subsp. pepo])

HSP 1 Score: 303.9 bits (777), Expect = 3.3e-79
Identity = 165/167 (98.80%), Postives = 166/167 (99.40%), Query Frame = 0


Query: 1   MATVTSATVAIPSFTGLKSSATASKSTSAVRVSSPAVPKLTVRASLKDVGVAVAATAASA 60
           MATVTSATVAIPSFTGLKSSATASKST+AVRVSSPAVPKLTVRASLKDVGVAVAATAASA
Sbjct: 1   MATVTSATVAIPSFTGLKSSATASKSTAAVRVSSPAVPKLTVRASLKDVGVAVAATAASA 60

Query: 61  LLASNALAIEVLLGGDDGSLAFIPNDFSVAAGEKIVFKNNAGFPHNVVFDEDEIPSGVDA 120
           LLASNALAIEVLLGGDDGSLAFIPNDFSVAAGEKIVFKNNAGFPHNVVFDEDEIPSGVDA
Sbjct: 61  LLASNALAIEVLLGGDDGSLAFIPNDFSVAAGEKIVFKNNAGFPHNVVFDEDEIPSGVDA 120

Query: 121 GKISMNEEDLLNAAGEVYEVNLTEKGSYSFYCSPHQGAGMVGKVTVN 168
           GKISMNEEDLLNA GEVYEVNLTEKGSYSFYCSPHQGAGMVGKVTVN
Sbjct: 121 GKISMNEEDLLNAPGEVYEVNLTEKGSYSFYCSPHQGAGMVGKVTVN 167

[Close]

BLAST of Carg08654 vs. NCBI nr
Match: XP_022976282.1 (plastocyanin [Cucurbita maxima])

HSP 1 Score: 300.4 bits (768), Expect = 3.7e-78
Identity = 162/167 (97.01%), Postives = 166/167 (99.40%), Query Frame = 0


Query: 1   MATVTSATVAIPSFTGLKSSATASKSTSAVRVSSPAVPKLTVRASLKDVGVAVAATAASA 60
           MATVTSATVAIPSFTGLK+SATASKST+AVRVSSP+VPKLTVRASLKD+GVAVAATAASA
Sbjct: 1   MATVTSATVAIPSFTGLKTSATASKSTAAVRVSSPSVPKLTVRASLKDLGVAVAATAASA 60

Query: 61  LLASNALAIEVLLGGDDGSLAFIPNDFSVAAGEKIVFKNNAGFPHNVVFDEDEIPSGVDA 120
           LLASNALAIEVLLGGDDGSLAFIPNDFSVAAGEKIVFKNNAGFPHNVVFDEDEIPSGVDA
Sbjct: 61  LLASNALAIEVLLGGDDGSLAFIPNDFSVAAGEKIVFKNNAGFPHNVVFDEDEIPSGVDA 120

Query: 121 GKISMNEEDLLNAAGEVYEVNLTEKGSYSFYCSPHQGAGMVGKVTVN 168
           GKISMNEEDLLNA GEVYEVNLTEKGSYSFYCSPHQGAGMVGKVTVN
Sbjct: 121 GKISMNEEDLLNAPGEVYEVNLTEKGSYSFYCSPHQGAGMVGKVTVN 167

[Close]

BLAST of Carg08654 vs. NCBI nr
Match: XP_022937324.1 (plastocyanin [Cucurbita moschata])

HSP 1 Score: 298.5 bits (763), Expect = 1.4e-77
Identity = 161/167 (96.41%), Postives = 164/167 (98.20%), Query Frame = 0


Query: 1   MATVTSATVAIPSFTGLKSSATASKSTSAVRVSSPAVPKLTVRASLKDVGVAVAATAASA 60
           MATVTSATVAIP+FTGLKS ATASK T+AVRVSSPAVPKLTVRASLKD+GVAVAATAASA
Sbjct: 1   MATVTSATVAIPTFTGLKSPATASKPTAAVRVSSPAVPKLTVRASLKDIGVAVAATAASA 60

Query: 61  LLASNALAIEVLLGGDDGSLAFIPNDFSVAAGEKIVFKNNAGFPHNVVFDEDEIPSGVDA 120
           LLASNALAIEVLLGGDDGSLAFIPNDFSVAAGEKIVFKNNAGFPHNVVFDEDEIPSGVDA
Sbjct: 61  LLASNALAIEVLLGGDDGSLAFIPNDFSVAAGEKIVFKNNAGFPHNVVFDEDEIPSGVDA 120

Query: 121 GKISMNEEDLLNAAGEVYEVNLTEKGSYSFYCSPHQGAGMVGKVTVN 168
           GKISMNEEDLLNA GEVYEVNLTEKGSYSFYCSPHQGAGMVGKVTVN
Sbjct: 121 GKISMNEEDLLNAPGEVYEVNLTEKGSYSFYCSPHQGAGMVGKVTVN 167

[Close]

BLAST of Carg08654 vs. NCBI nr
Match: XP_008466451.1 (PREDICTED: plastocyanin [Cucumis melo])

HSP 1 Score: 269.2 bits (687), Expect = 9.1e-69
Identity = 145/167 (86.83%), Postives = 158/167 (94.61%), Query Frame = 0


Query: 1   MATVTSATVAIPSFTGLKSSATASKSTSAVRVSSPAVPKLTVRASLKDVGVAVAATAASA 60
           MA VTSA VAIPSFTGLKSS ++SK TSA+R+ SPA PKL+VRASLKDVGVAVAATAASA
Sbjct: 1   MAAVTSAAVAIPSFTGLKSS-SSSKPTSAIRLPSPASPKLSVRASLKDVGVAVAATAASA 60

Query: 61  LLASNALAIEVLLGGDDGSLAFIPNDFSVAAGEKIVFKNNAGFPHNVVFDEDEIPSGVDA 120
           LLASNA+AIE+LLGGDDGSLAF+PN+F+VA+GE IVFKNNAGFPHNVVFDEDEIPSGVDA
Sbjct: 61  LLASNAMAIEILLGGDDGSLAFVPNNFTVASGETIVFKNNAGFPHNVVFDEDEIPSGVDA 120

Query: 121 GKISMNEEDLLNAAGEVYEVNLTEKGSYSFYCSPHQGAGMVGKVTVN 168
           GKISM+EE+LLNA GEVYEV LTEKGSYSFYCSPHQGAGMVGKVTVN
Sbjct: 121 GKISMDEENLLNAPGEVYEVQLTEKGSYSFYCSPHQGAGMVGKVTVN 166

[Close]

BLAST of Carg08654 vs. NCBI nr
Match: XP_004136366.1 (PREDICTED: plastocyanin [Cucumis sativus] >KGN60068.1 Plastocyanin A, chloroplast [Cucumis sativus])

HSP 1 Score: 263.1 bits (671), Expect = 6.5e-67
Identity = 140/167 (83.83%), Postives = 155/167 (92.81%), Query Frame = 0


Query: 1   MATVTSATVAIPSFTGLKSSATASKSTSAVRVSSPAVPKLTVRASLKDVGVAVAATAASA 60
           MA VTSA VAIPSFTGLKS+ ++SK TS +R+ SPA PKL ++ASLKDVGVAVAATAASA
Sbjct: 1   MAAVTSAAVAIPSFTGLKST-SSSKPTSLIRLPSPASPKLCIKASLKDVGVAVAATAASA 60

Query: 61  LLASNALAIEVLLGGDDGSLAFIPNDFSVAAGEKIVFKNNAGFPHNVVFDEDEIPSGVDA 120
           LLASNA+AIE+LLGGDDGSLAF+PN+F+VA+GEKI FKNNAGFPHNVVFDEDEIPSGVD 
Sbjct: 61  LLASNAMAIEILLGGDDGSLAFVPNNFTVASGEKITFKNNAGFPHNVVFDEDEIPSGVDV 120

Query: 121 GKISMNEEDLLNAAGEVYEVNLTEKGSYSFYCSPHQGAGMVGKVTVN 168
           GKISM+EE+LLNA GEVYEV LTEKGSYSFYCSPHQGAGMVGKVTVN
Sbjct: 121 GKISMDEENLLNAPGEVYEVQLTEKGSYSFYCSPHQGAGMVGKVTVN 166

[Close]

BLAST of Carg08654 vs. TAIR10
Match: AT1G20340.1 (Cupredoxin superfamily protein)

HSP 1 Score: 238.4 bits (607), Expect = 3.1e-63
Identity = 126/167 (75.45%), Postives = 143/167 (85.63%), Query Frame = 0


Query: 1   MATVTSATVAIPSFTGLKSSATASKSTSAVRVSSPAVPKLTVRASLKDVGVAVAATAASA 60
           MA+VTSATVAIPSFTGLK+S   S +T  ++ ++ A PKLTV++SLK+ GVA  A AAS 
Sbjct: 1   MASVTSATVAIPSFTGLKASTIKSSATVRIQTAAVASPKLTVKSSLKNFGVAAVAAAASI 60

Query: 61  LLASNALAIEVLLGGDDGSLAFIPNDFSVAAGEKIVFKNNAGFPHNVVFDEDEIPSGVDA 120
            LA NA+AIEVLLGG DGSLAFIPNDFS+A GEKIVFKNNAG+PHNVVFDEDEIPSGVD 
Sbjct: 61  ALAGNAMAIEVLLGGGDGSLAFIPNDFSIAKGEKIVFKNNAGYPHNVVFDEDEIPSGVDV 120

Query: 121 GKISMNEEDLLNAAGEVYEVNLTEKGSYSFYCSPHQGAGMVGKVTVN 168
            KISM+E+DLLN AGE YEV LTE G+YSFYC+PHQGAGMVGKVTVN
Sbjct: 121 AKISMDEQDLLNGAGETYEVALTEPGTYSFYCAPHQGAGMVGKVTVN 167

[Close]

BLAST of Carg08654 vs. TAIR10
Match: AT1G76100.1 (plastocyanin 1)

HSP 1 Score: 219.9 bits (559), Expect = 1.2e-57
Identity = 122/174 (70.11%), Postives = 139/174 (79.89%), Query Frame = 0


Query: 1   MATVTSATVAIPSFTGL--------KSSATASKSTSAVRVSSPAVPKLTVRASLKDVGVA 60
           MA +TSATV IPSFTGL        K+ +T S+STSA R    A PKL +++SLKD GV 
Sbjct: 1   MAAITSATVTIPSFTGLKLAVSSKPKTLSTISRSTSATR----APPKLALKSSLKDFGVI 60

Query: 61  VAATAASALLASNALAIEVLLGGDDGSLAFIPNDFSVAAGEKIVFKNNAGFPHNVVFDED 120
             ATAAS +LA NA+A+EVLLG DDGSLAF+P++F+VA GEKIVFKNNAGFPHNVVFDED
Sbjct: 61  AVATAASIVLAGNAMAMEVLLGSDDGSLAFVPSEFTVAKGEKIVFKNNAGFPHNVVFDED 120

Query: 121 EIPSGVDAGKISMNEEDLLNAAGEVYEVNLTEKGSYSFYCSPHQGAGMVGKVTV 167
           EIPSGVDA KISM+E  LLN AGE YEV LTE GSY FYC+PHQGAGMVGK+TV
Sbjct: 121 EIPSGVDASKISMDETALLNGAGETYEVTLTEPGSYGFYCAPHQGAGMVGKLTV 170

[Close]

BLAST of Carg08654 vs. Swiss-Prot
Match: sp|P42699|PLAS2_ARATH (Plastocyanin major isoform, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=DRT112 PE=1 SV=2)

HSP 1 Score: 238.4 bits (607), Expect = 5.6e-62
Identity = 126/167 (75.45%), Postives = 143/167 (85.63%), Query Frame = 0


Query: 1   MATVTSATVAIPSFTGLKSSATASKSTSAVRVSSPAVPKLTVRASLKDVGVAVAATAASA 60
           MA+VTSATVAIPSFTGLK+S   S +T  ++ ++ A PKLTV++SLK+ GVA  A AAS 
Sbjct: 1   MASVTSATVAIPSFTGLKASTIKSSATVRIQTAAVASPKLTVKSSLKNFGVAAVAAAASI 60

Query: 61  LLASNALAIEVLLGGDDGSLAFIPNDFSVAAGEKIVFKNNAGFPHNVVFDEDEIPSGVDA 120
            LA NA+AIEVLLGG DGSLAFIPNDFS+A GEKIVFKNNAG+PHNVVFDEDEIPSGVD 
Sbjct: 61  ALAGNAMAIEVLLGGGDGSLAFIPNDFSIAKGEKIVFKNNAGYPHNVVFDEDEIPSGVDV 120

Query: 121 GKISMNEEDLLNAAGEVYEVNLTEKGSYSFYCSPHQGAGMVGKVTVN 168
            KISM+E+DLLN AGE YEV LTE G+YSFYC+PHQGAGMVGKVTVN
Sbjct: 121 AKISMDEQDLLNGAGETYEVALTEPGTYSFYCAPHQGAGMVGKVTVN 167

[Close]

BLAST of Carg08654 vs. Swiss-Prot
Match: sp|P00289|PLAS_SPIOL (Plastocyanin, chloroplastic OS=Spinacia oleracea OX=3562 GN=PETE PE=1 SV=2)

HSP 1 Score: 236.1 bits (601), Expect = 2.8e-61
Identity = 125/168 (74.40%), Postives = 147/168 (87.50%), Query Frame = 0


Query: 1   MATV-TSATVAIPSFTGLKSSATASKSTSAVRVSSPAVPKLTVRASLKDVGVAVAATAAS 60
           MATV +SA VA+PSFTGLK+S +   +T+ +  ++ AVP+L+V+ASLK+VG AV ATAA+
Sbjct: 1   MATVASSAAVAVPSFTGLKASGSIKPTTAKIIPTTTAVPRLSVKASLKNVGAAVVATAAA 60

Query: 61  ALLASNALAIEVLLGGDDGSLAFIPNDFSVAAGEKIVFKNNAGFPHNVVFDEDEIPSGVD 120
            LLA NA+A+EVLLGG DGSLAF+P DFSVA+GE+IVFKNNAGFPHNVVFDEDEIPSGVD
Sbjct: 61  GLLAGNAMAVEVLLGGGDGSLAFLPGDFSVASGEEIVFKNNAGFPHNVVFDEDEIPSGVD 120

Query: 121 AGKISMNEEDLLNAAGEVYEVNLTEKGSYSFYCSPHQGAGMVGKVTVN 168
           A KISM+EEDLLNA GE Y+V LTEKG+Y FYCSPHQGAGMVGKVTVN
Sbjct: 121 AAKISMSEEDLLNAPGETYKVTLTEKGTYKFYCSPHQGAGMVGKVTVN 168

[Close]

BLAST of Carg08654 vs. Swiss-Prot
Match: sp|P00299|PLAS1_POPNI (Plastocyanin A, chloroplastic OS=Populus nigra OX=3691 GN=PETE PE=1 SV=2)

HSP 1 Score: 233.4 bits (594), Expect = 1.8e-60
Identity = 124/169 (73.37%), Postives = 147/169 (86.98%), Query Frame = 0


Query: 1   MATVTSATVAIPSFTGLK--SSATASKSTSAVRVSSPAVPKLTVRASLKDVGVAVAATAA 60
           MATVTSA V+IPSFTGLK  S++ A  S SA   +SP +P+L+++AS+KDVG AV ATAA
Sbjct: 1   MATVTSAAVSIPSFTGLKAGSASNAKVSASAXXXASP-LPRLSIKASMKDVGAAVVATAA 60

Query: 61  SALLASNALAIEVLLGGDDGSLAFIPNDFSVAAGEKIVFKNNAGFPHNVVFDEDEIPSGV 120
           SA++ASNA+AI+VLLG DDGSLAF+P++FS++ GEKIVFKNNAGFPHN+VFDED IPSGV
Sbjct: 61  SAMIASNAMAIDVLLGADDGSLAFVPSEFSISPGEKIVFKNNAGFPHNIVFDEDSIPSGV 120

Query: 121 DAGKISMNEEDLLNAAGEVYEVNLTEKGSYSFYCSPHQGAGMVGKVTVN 168
           DA KISM+EEDLLNA GE +EV L+ KG YSFYCSPHQGAGMVGKVTVN
Sbjct: 121 DASKISMSEEDLLNAKGETFEVALSNKGEYSFYCSPHQGAGMVGKVTVN 168

[Close]

BLAST of Carg08654 vs. Swiss-Prot
Match: sp|P16002|PLAS_PEA (Plastocyanin, chloroplastic OS=Pisum sativum OX=3888 GN=PETE PE=3 SV=1)

HSP 1 Score: 221.5 bits (563), Expect = 7.1e-57
Identity = 121/168 (72.02%), Postives = 136/168 (80.95%), Query Frame = 0


Query: 1   MATVTSATVAIPSFTGLKSSATASKSTSA-VRVSSPAVPKLTVRASLKDVGVAVAATAAS 60
           MATVTS TVAIPSF+GLK++A    S  A +  S+   P+L VRASLKD GVA+ ATAAS
Sbjct: 1   MATVTSTTVAIPSFSGLKTNAATKVSAMAKIPTSTSQSPRLCVRASLKDFGVALVATAAS 60

Query: 61  ALLASNALAIEVLLGGDDGSLAFIPNDFSVAAGEKIVFKNNAGFPHNVVFDEDEIPSGVD 120
           A+LASNALA+EVLLG  DG LAF+P+   V+AGE IVFKNNAGFPHNVVFDEDEIP+GVD
Sbjct: 61  AVLASNALAVEVLLGASDGGLAFVPSSLEVSAGETIVFKNNAGFPHNVVFDEDEIPAGVD 120

Query: 121 AGKISMNEEDLLNAAGEVYEVNLTEKGSYSFYCSPHQGAGMVGKVTVN 168
           A KISM EEDLLNA GE Y V L  KG+Y FYCSPHQGAGMVG+VTVN
Sbjct: 121 ASKISMPEEDLLNAPGETYSVKLDAKGTYKFYCSPHQGAGMVGQVTVN 168

[Close]

BLAST of Carg08654 vs. Swiss-Prot
Match: sp|P11970|PLAS2_POPNI (Plastocyanin B, chloroplastic OS=Populus nigra OX=3691 GN=PETE PE=1 SV=2)

HSP 1 Score: 220.3 bits (560), Expect = 1.6e-56
Identity = 116/168 (69.05%), Postives = 141/168 (83.93%), Query Frame = 0


Query: 1   MATVTSATVAIPSFTGLK-SSATASKSTSAVRVSSPAVPKLTVRASLKDVGVAVAATAAS 60
           MA VTSA V+IPSFTGLK +SA+ +K           +P+L+++ASLK+VG AV ATAAS
Sbjct: 1   MAAVTSAAVSIPSFTGLKAASASNAKVXXXXXXXXXPLPRLSIKASLKEVGAAVVATAAS 60

Query: 61  ALLASNALAIEVLLGGDDGSLAFIPNDFSVAAGEKIVFKNNAGFPHNVVFDEDEIPSGVD 120
           A++ASNA+A++VLLG DDGSLAF+P++FSV AGEKIVFKNNAGFPHNV+FDED +PSGVD
Sbjct: 61  AMIASNAMAVDVLLGADDGSLAFVPSEFSVPAGEKIVFKNNAGFPHNVLFDEDAVPSGVD 120

Query: 121 AGKISMNEEDLLNAAGEVYEVNLTEKGSYSFYCSPHQGAGMVGKVTVN 168
             KISM+EEDLLNA GE +EV L++KG Y+FYCSPHQGAGMVGKV VN
Sbjct: 121 VSKISMSEEDLLNAKGETFEVALSDKGEYTFYCSPHQGAGMVGKVIVN 168

[Close]

BLAST of Carg08654 vs. TrEMBL
Match: tr|A0A1S3CRA6|A0A1S3CRA6_CUCME (Plastocyanin OS=Cucumis melo OX=3656 GN=LOC103503851 PE=3 SV=1)

HSP 1 Score: 269.2 bits (687), Expect = 6.0e-69
Identity = 145/167 (86.83%), Postives = 158/167 (94.61%), Query Frame = 0


Query: 1   MATVTSATVAIPSFTGLKSSATASKSTSAVRVSSPAVPKLTVRASLKDVGVAVAATAASA 60
           MA VTSA VAIPSFTGLKSS ++SK TSA+R+ SPA PKL+VRASLKDVGVAVAATAASA
Sbjct: 1   MAAVTSAAVAIPSFTGLKSS-SSSKPTSAIRLPSPASPKLSVRASLKDVGVAVAATAASA 60

Query: 61  LLASNALAIEVLLGGDDGSLAFIPNDFSVAAGEKIVFKNNAGFPHNVVFDEDEIPSGVDA 120
           LLASNA+AIE+LLGGDDGSLAF+PN+F+VA+GE IVFKNNAGFPHNVVFDEDEIPSGVDA
Sbjct: 61  LLASNAMAIEILLGGDDGSLAFVPNNFTVASGETIVFKNNAGFPHNVVFDEDEIPSGVDA 120

Query: 121 GKISMNEEDLLNAAGEVYEVNLTEKGSYSFYCSPHQGAGMVGKVTVN 168
           GKISM+EE+LLNA GEVYEV LTEKGSYSFYCSPHQGAGMVGKVTVN
Sbjct: 121 GKISMDEENLLNAPGEVYEVQLTEKGSYSFYCSPHQGAGMVGKVTVN 166

[Close]

BLAST of Carg08654 vs. TrEMBL
Match: tr|A0A0A0LE99|A0A0A0LE99_CUCSA (Plastocyanin OS=Cucumis sativus OX=3659 GN=Csa_3G875430 PE=3 SV=1)

HSP 1 Score: 263.1 bits (671), Expect = 4.3e-67
Identity = 140/167 (83.83%), Postives = 155/167 (92.81%), Query Frame = 0


Query: 1   MATVTSATVAIPSFTGLKSSATASKSTSAVRVSSPAVPKLTVRASLKDVGVAVAATAASA 60
           MA VTSA VAIPSFTGLKS+ ++SK TS +R+ SPA PKL ++ASLKDVGVAVAATAASA
Sbjct: 1   MAAVTSAAVAIPSFTGLKST-SSSKPTSLIRLPSPASPKLCIKASLKDVGVAVAATAASA 60

Query: 61  LLASNALAIEVLLGGDDGSLAFIPNDFSVAAGEKIVFKNNAGFPHNVVFDEDEIPSGVDA 120
           LLASNA+AIE+LLGGDDGSLAF+PN+F+VA+GEKI FKNNAGFPHNVVFDEDEIPSGVD 
Sbjct: 61  LLASNAMAIEILLGGDDGSLAFVPNNFTVASGEKITFKNNAGFPHNVVFDEDEIPSGVDV 120

Query: 121 GKISMNEEDLLNAAGEVYEVNLTEKGSYSFYCSPHQGAGMVGKVTVN 168
           GKISM+EE+LLNA GEVYEV LTEKGSYSFYCSPHQGAGMVGKVTVN
Sbjct: 121 GKISMDEENLLNAPGEVYEVQLTEKGSYSFYCSPHQGAGMVGKVTVN 166

[Close]

BLAST of Carg08654 vs. TrEMBL
Match: tr|A0A2I4HBI7|A0A2I4HBI7_9ROSI (Plastocyanin OS=Juglans regia OX=51240 GN=LOC109015464 PE=3 SV=1)

HSP 1 Score: 251.9 bits (642), Expect = 1.0e-63
Identity = 135/168 (80.36%), Postives = 149/168 (88.69%), Query Frame = 0


Query: 1   MATVTSATVAIPSFTGLKSSATAS-KSTSAVRVSSPAVPKLTVRASLKDVGVAVAATAAS 60
           MATVTSA VAIPSFTGLK++  A   +T+ V  S+ AVP+L+++ASLKDVGVAVAATAAS
Sbjct: 1   MATVTSAAVAIPSFTGLKAAGAAKVNATAKVSXSASAVPRLSIKASLKDVGVAVAATAAS 60

Query: 61  ALLASNALAIEVLLGGDDGSLAFIPNDFSVAAGEKIVFKNNAGFPHNVVFDEDEIPSGVD 120
           ALLASNA+AIEVLLG DDG LAF+PN FS++ GEKIVFKNNAGFPHNVVFDEDEIPSGVD
Sbjct: 61  ALLASNAMAIEVLLGSDDGGLAFVPNSFSISPGEKIVFKNNAGFPHNVVFDEDEIPSGVD 120

Query: 121 AGKISMNEEDLLNAAGEVYEVNLTEKGSYSFYCSPHQGAGMVGKVTVN 168
           AGKISM+EEDLLN  GE Y V LTEKGSYSFYCSPHQGAGMVGKVTVN
Sbjct: 121 AGKISMSEEDLLNGPGETYAVTLTEKGSYSFYCSPHQGAGMVGKVTVN 168

[Close]

BLAST of Carg08654 vs. TrEMBL
Match: tr|A0A1R3HZ20|A0A1R3HZ20_9ROSI (Plastocyanin OS=Corchorus olitorius OX=93759 GN=COLO4_26078 PE=3 SV=1)

HSP 1 Score: 251.1 bits (640), Expect = 1.7e-63
Identity = 132/167 (79.04%), Postives = 148/167 (88.62%), Query Frame = 0


Query: 1   MATVTSATVAIPSFTGLKSSATASKSTSAVRVSSPAVPKLTVRASLKDVGVAVAATAASA 60
           MATVTSA VAIPSFTGLK+ AT +K ++ V   +   P+L+++ASLKD GVAVAATAASA
Sbjct: 1   MATVTSAAVAIPSFTGLKAGATQAKVSAKVATVATPAPRLSIKASLKDFGVAVAATAASA 60

Query: 61  LLASNALAIEVLLGGDDGSLAFIPNDFSVAAGEKIVFKNNAGFPHNVVFDEDEIPSGVDA 120
           +LASNALA+EVLLGGDDGSLAF+PN  SV+AGEKIVFKNNAGFPHNV+FDEDEIPSGVDA
Sbjct: 61  ILASNALAVEVLLGGDDGSLAFVPNSLSVSAGEKIVFKNNAGFPHNVIFDEDEIPSGVDA 120

Query: 121 GKISMNEEDLLNAAGEVYEVNLTEKGSYSFYCSPHQGAGMVGKVTVN 168
            KISM+EEDLLNA GE Y V LTEKG+YSFYCSPHQGAGMVGKVTVN
Sbjct: 121 SKISMSEEDLLNAPGETYAVTLTEKGTYSFYCSPHQGAGMVGKVTVN 167

[Close]

BLAST of Carg08654 vs. TrEMBL
Match: tr|I1JSY7|I1JSY7_SOYBN (Plastocyanin OS=Glycine max OX=3847 GN=GLYMA_04G020300 PE=3 SV=1)

HSP 1 Score: 250.4 bits (638), Expect = 2.9e-63
Identity = 134/167 (80.24%), Postives = 151/167 (90.42%), Query Frame = 0


Query: 1   MATVTSATVAIPSFTGLKSSATASKSTSAVRVSSPAVPKLTVRASLKDVGVAVAATAASA 60
           MATVTSA VAIPSFTGLK  A+A K ++AV+VS+P   +L ++ASLKDVGVAV ATAASA
Sbjct: 1   MATVTSAAVAIPSFTGLK--ASAGKVSAAVKVSAPQATRLGIKASLKDVGVAVVATAASA 60

Query: 61  LLASNALAIEVLLGGDDGSLAFIPNDFSVAAGEKIVFKNNAGFPHNVVFDEDEIPSGVDA 120
           +LASNA+AIEVLLGGDDGSLAF+PN+FSVA+GEKIVFKNNAGFPHNVVFDEDEIPSGVDA
Sbjct: 61  VLASNAMAIEVLLGGDDGSLAFVPNNFSVASGEKIVFKNNAGFPHNVVFDEDEIPSGVDA 120

Query: 121 GKISMNEEDLLNAAGEVYEVNLTEKGSYSFYCSPHQGAGMVGKVTVN 168
           GKISM++EDLLNA GE Y V L  KG+YSF+CSPHQGAGMVGKVTVN
Sbjct: 121 GKISMSDEDLLNAPGETYSVTLDAKGTYSFFCSPHQGAGMVGKVTVN 165

The following BLAST results are available for this feature:

BLAST of Carg08654 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023534891.1	3.3e-79	98.80	plastocyanin [Cucurbita pepo subsp. pepo]	[more]
XP_022976282.1	3.7e-78	97.01	plastocyanin [Cucurbita maxima]	[more]
XP_022937324.1	1.4e-77	96.41	plastocyanin [Cucurbita moschata]	[more]
XP_008466451.1	9.1e-69	86.83	PREDICTED: plastocyanin [Cucumis melo]	[more]
XP_004136366.1	6.5e-67	83.83	PREDICTED: plastocyanin [Cucumis sativus] >KGN60068.1 Plastocyanin A, chloroplas...	[more]

BLAST of Carg08654 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G20340.1	3.1e-63	75.45	Cupredoxin superfamily protein	[more]
AT1G76100.1	1.2e-57	70.11	plastocyanin 1	[more]

BLAST of Carg08654 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|P42699\|PLAS2_ARATH	5.6e-62	75.45	Plastocyanin major isoform, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=DRT...	[more]
sp\|P00289\|PLAS_SPIOL	2.8e-61	74.40	Plastocyanin, chloroplastic OS=Spinacia oleracea OX=3562 GN=PETE PE=1 SV=2	[more]
sp\|P00299\|PLAS1_POPNI	1.8e-60	73.37	Plastocyanin A, chloroplastic OS=Populus nigra OX=3691 GN=PETE PE=1 SV=2	[more]
sp\|P16002\|PLAS_PEA	7.1e-57	72.02	Plastocyanin, chloroplastic OS=Pisum sativum OX=3888 GN=PETE PE=3 SV=1	[more]
sp\|P11970\|PLAS2_POPNI	1.6e-56	69.05	Plastocyanin B, chloroplastic OS=Populus nigra OX=3691 GN=PETE PE=1 SV=2	[more]

BLAST of Carg08654 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3CRA6\|A0A1S3CRA6_CUCME	6.0e-69	86.83	Plastocyanin OS=Cucumis melo OX=3656 GN=LOC103503851 PE=3 SV=1	[more]
tr\|A0A0A0LE99\|A0A0A0LE99_CUCSA	4.3e-67	83.83	Plastocyanin OS=Cucumis sativus OX=3659 GN=Csa_3G875430 PE=3 SV=1	[more]
tr\|A0A2I4HBI7\|A0A2I4HBI7_9ROSI	1.0e-63	80.36	Plastocyanin OS=Juglans regia OX=51240 GN=LOC109015464 PE=3 SV=1	[more]
tr\|A0A1R3HZ20\|A0A1R3HZ20_9ROSI	1.7e-63	79.04	Plastocyanin OS=Corchorus olitorius OX=93759 GN=COLO4_26078 PE=3 SV=1	[more]
tr\|I1JSY7\|I1JSY7_SOYBN	2.9e-63	80.24	Plastocyanin OS=Glycine max OX=3847 GN=GLYMA_04G020300 PE=3 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0005507	copper ion binding
GO:0009055	electron carrier activity

Vocabulary: **INTERPRO**
Term	Definition
IPR028871	BlueCu_1_BS
IPR000923	BlueCu_1
IPR008972	Cupredoxin
IPR001235	Copper_blue_Plastocyanin
IPR002387	Plastocyanin

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005507	copper ion binding
molecular_function	GO:0009055	electron carrier activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg08654-RA	Carg08654-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002387	Plastocyanin	PRINTS	PR00157	PLASTOCYANIN	coord: 97..115 score: 83.95 coord: 146..165 score: 80.37 coord: 74..93 score: 62.32
IPR002387	Plastocyanin	TIGRFAM	TIGR02656	TIGR02656	coord: 69..167 e-value: 8.6E-42 score: 139.6
IPR002387	Plastocyanin	CDD	cd04219	Plastocyanin	coord: 69..167 e-value: 1.93301E-47 score: 150.983
IPR001235	Blue (type 1) copper protein, plastocyanin-type	PRINTS	PR00156	COPPERBLUE	coord: 88..101 score: 42.86 coord: 144..158 score: 51.99 coord: 103..118 score: 55.62
IPR008972	Cupredoxin	GENE3D	G3DSA:2.60.40.420		coord: 69..167 e-value: 1.2E-26 score: 95.4
IPR008972	Cupredoxin	SUPERFAMILY	SSF49503	Cupredoxins	coord: 67..167
IPR000923	Blue (type 1) copper domain	PFAM	PF00127	Copper-bind	coord: 70..167 e-value: 1.9E-34 score: 117.9
None	No IPR available	PANTHER	PTHR34192	FAMILY NOT NAMED	coord: 1..167
None	No IPR available	PANTHER	PTHR34192:SF2	PLASTOCYANIN MAJOR ISOFORM, CHLOROPLASTIC-RELATED	coord: 1..167
IPR028871	Blue (type 1) copper protein, binding site	PROSITE	PS00196	COPPER_BLUE	coord: 146..160

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg08654	Cla007419	Watermelon (97103) v1	carwmB0103
Carg08654	Csa3G875430	Cucumber (Chinese Long) v2	carcuB0111
Carg08654	MELO3C003725	Melon (DHL92) v3.5.1	carmeB0106
Carg08654	ClCG05G015390	Watermelon (Charleston Gray)	carwcgB0105
Carg08654	CSPI03G43700	Wild cucumber (PI 183967)	carcpiB0116
Carg08654	Cucsa.343280	Cucumber (Gy14) v1	carcgyB0126
Carg08654	CmaCh09G000820	Cucurbita maxima (Rimu)	carcmaB0134
Carg08654	CmoCh09G000810	Cucurbita moschata (Rifu)	carcmoB0144
Carg08654	Lsi04G017810	Bottle gourd (USVL1VR-Ls)	carlsiB094
Carg08654	Cp4.1LG06g00360	Cucurbita pepo (Zucchini)	carcpeB0154
Carg08654	CsGy3G041220	Cucumber (Gy14) v2	carcgybB0111
Carg08654	MELO3C003725.2	Melon (DHL92) v3.6.1	carmedB0108
Carg08654	CsaV3_3G046150	Cucumber (Chinese Long) v3	carcucB0120
Carg08654	Cla97C05G096440	Watermelon (97103) v2	carwmbB0108

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg08654	Silver-seed gourd	carcarB122
Carg08654	Cucurbita maxima (Rimu)	carcmaB0136
Carg08654	Cucurbita moschata (Rifu)	carcmoB0146
Carg08654	Cucurbita pepo (Zucchini)	carcpeB0153
Carg08654	Watermelon (97103) v1	carwmB0102