Cla006464 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla006464
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Agamous-like MADS-box protein AGL62 (AHRD V1 -- AGL62_ARATH)
Location	Chr10 : 14382905 .. 14383755 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGCGGAAGCGCAGTGAAGAGTTGAACAAACTGCGGAAGGCAAGCCAGGTATTGATAACTATTTTCTATTTTTCTTTTTTAATTTTTAAACTAAAACATTTTCACAATTCAAAACTTTTTTTTAAACATAACCGTTTGATGTTTAGAAATTGTTTCCGTTTAGAATTGAGAGTACTACGTGCATTTCTTTGTGCATTTTGCCAAATTTTTCAACCATAATTTGTCACGTGACAAATTCATTTTAATTTTTTTAAAAATCTTTTAGTTCTTTTTTTATGTGTTATGAATAAAGATGGTACATGCATTTTAGGATGCATCTAATAATTTGACAAAAAATTCGGAGTTTTATTCTTTCTTCCTATTGTTGAAGTAAGGTGAAAATGATCCAAGGAAAAAAAAATTTAGTTACGAGTAAACGAGAATAATTTTTTAAACTCGAAATCGTTATCAAACAAAGATCCAAACTCCAAAATCTATGCAATGTTCAAATATTCCTATTAAATTACTATTGAATGTTTAAAGTATAGGTGAATAAATAATAACATATTTAATATTTTATATATATTAAGGCACAATGTTGGTGGGAGCTTCCCATAGAAGAAATGGAAATGCATCAACTAGAACAACTTAAAGCATCGTTGGATGAGCTAAAGAAGAATGTCACACAACAAGCTGATCGGATTTTAATTCAGACTTCTAATGCCAATCCGCCGCCGCAGTTCTTCCCGACTCCACCAACACCGGCGAACCCTAGCCAGCAAGCTGGCCTTTTCGTCGTCGATCCGAAGAACATCATCTCCCATCTTCCCTACAACTATGGCTCCTATGGATCAAGAGGTTTCTTTTGA

mRNA sequence

ATGGAGCGGAAGCGCAGTGAAGAGTTGAACAAACTGCGGAAGGCAAGCCAGGCACAATGTTGGTGGGAGCTTCCCATAGAAGAAATGGAAATGCATCAACTAGAACAACTTAAAGCATCGTTGGATGAGCTAAAGAAGAATGTCACACAACAAGCTGATCGGATTTTAATTCAGACTTCTAATGCCAATCCGCCGCCGCAGTTCTTCCCGACTCCACCAACACCGGCGAACCCTAGCCAGCAAGCTGGCCTTTTCGTCGTCGATCCGAAGAACATCATCTCCCATCTTCCCTACAACTATGGCTCCTATGGATCAAGAGGTTTCTTTTGA

Coding sequence (CDS)

ATGGAGCGGAAGCGCAGTGAAGAGTTGAACAAACTGCGGAAGGCAAGCCAGGCACAATGTTGGTGGGAGCTTCCCATAGAAGAAATGGAAATGCATCAACTAGAACAACTTAAAGCATCGTTGGATGAGCTAAAGAAGAATGTCACACAACAAGCTGATCGGATTTTAATTCAGACTTCTAATGCCAATCCGCCGCCGCAGTTCTTCCCGACTCCACCAACACCGGCGAACCCTAGCCAGCAAGCTGGCCTTTTCGTCGTCGATCCGAAGAACATCATCTCCCATCTTCCCTACAACTATGGCTCCTATGGATCAAGAGGTTTCTTTTGA

Protein sequence

MERKRSEELNKLRKASQAQCWWELPIEEMEMHQLEQLKASLDELKKNVTQQADRILIQTSNANPPPQFFPTPPTPANPSQQAGLFVVDPKNIISHLPYNYGSYGSRGFF

Homology

[Close]

BLAST of Cla006464 vs. TrEMBL
Match: A0A0A0KWA9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G000530 PE=4 SV=1)

HSP 1 Score: 187.2 bits (474), Expect = 1.1e-44
Identity = 98/117 (83.76%), Postives = 100/117 (85.47%), Query Frame = 1


Query: 1   MERKRSEELNKLRKASQAQCWWELPIEEMEMHQLEQLKASLDELKKNVTQQADRILIQT- 60
           MERKR EELNKLRKASQAQCWWELPIEEMEMHQLEQLKASLDELKKNVTQQADRILIQT 
Sbjct: 112 MERKRGEELNKLRKASQAQCWWELPIEEMEMHQLEQLKASLDELKKNVTQQADRILIQTS 171

Query: 61  SNANPPPQ-FFP------TPPTPANPSQQAGLFVVDPKNIISHLPYNYGSYGSRGFF 110
           SNANPP Q  FP      T  T   P+QQ GLFVVDPKNIISHLP+NYGSYGSRGFF
Sbjct: 172 SNANPPTQLIFPTQIPTQTSTTTNGPNQQPGLFVVDPKNIISHLPFNYGSYGSRGFF 228

[Close]

BLAST of Cla006464 vs. TrEMBL
Match: A0A067EEZ4_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g039654mg PE=4 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 1.3e-21
Identity = 58/108 (53.70%), Postives = 77/108 (71.30%), Query Frame = 1


Query: 1   MERKRSEELNKLRKASQAQCWWELPIEEMEMHQLEQLKASLDELKKNVTQQADRILIQTS 60
           +E+KR EELN++RKASQAQCWWE PIEE+ + QLEQLK SL+ELKKNV +QA+++LIQ+S
Sbjct: 117 IEKKRGEELNQMRKASQAQCWWEAPIEELNLPQLEQLKMSLEELKKNVGKQAEKMLIQSS 176

Query: 61  NANPPPQFFPTPPT-------PANPSQQAGLFVVDPKNIISHLPYNYG 102
           N   PPQFF    +       P +P+  A +F  +P N++ H  YN G
Sbjct: 177 N---PPQFFAGSSSNAGGMNLPFDPNNNAAVF--NPNNMMPHPGYNPG 219

[Close]

BLAST of Cla006464 vs. TrEMBL
Match: V4SG26_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10030142mg PE=4 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 3.1e-20
Identity = 57/108 (52.78%), Postives = 76/108 (70.37%), Query Frame = 1


Query: 1   MERKRSEELNKLRKASQAQCWWELPIEEMEMHQLEQLKASLDELKKNVTQQADRILIQTS 60
           +E+KR EELN++RKASQAQCWWE PIEE+ + QLEQLK SL+ELKKNV +QA+++LIQ+S
Sbjct: 116 IEKKRGEELNQMRKASQAQCWWEAPIEELNLPQLEQLKMSLEELKKNVGKQAEKMLIQSS 175

Query: 61  NANPPPQFFPTPPT-------PANPSQQAGLFVVDPKNIISHLPYNYG 102
           N   PPQFF    +       P +P+  A +F  +P N++    YN G
Sbjct: 176 N---PPQFFAGSSSNAGGMNLPFDPNNNATVF--NPNNMMPPPGYNPG 218

[Close]

BLAST of Cla006464 vs. TrEMBL
Match: B9S7W9_RICCO (Mads box protein, putative OS=Ricinus communis GN=RCOM_1382330 PE=4 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 2.5e-17
Identity = 51/109 (46.79%), Postives = 70/109 (64.22%), Query Frame = 1


Query: 1   MERKRSEELNKLRKASQAQCWWELPIEEMEMHQLEQLKASLDELKKNVTQQADRILIQTS 60
           MERKR EELN++RK  Q +CWWE PI+++ M QLEQL+ SL++LKKNV  QAD++LIQ +
Sbjct: 113 MERKRGEELNQMRKTGQNRCWWEAPIDDLTMPQLEQLRMSLEQLKKNVAMQADKLLIQNA 172

Query: 61  NANPPPQFFPTPPTPANPSQQAGLFVVDPKNIISHLPYNYGSYGSRGFF 110
            +    QFF +  T   P      F+ +  N+ +   YN   YG RGF+
Sbjct: 173 QSQ---QFFASSSTAPPPPLPNNNFMFNIPNMGTLPGYNNFGYG-RGFY 217

[Close]

BLAST of Cla006464 vs. TrEMBL
Match: M5VUL0_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa026127mg PE=4 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 3.2e-17
Identity = 45/69 (65.22%), Postives = 57/69 (82.61%), Query Frame = 1


Query: 1   MERKRSEELNKLRKASQAQCWWELPIEEMEMHQLEQLKASLDELKKNVTQQADRILIQTS 60
           +E+KR +ELN+++K +QAQCWWE P+E MEM QLEQLK SL+ELKKNV +QADR+LIQ +
Sbjct: 118 VEKKRGDELNQVKKVTQAQCWWEGPLEGMEMSQLEQLKTSLEELKKNVARQADRVLIQNT 177

Query: 61  NANPPPQFF 70
           N   P QFF
Sbjct: 178 N---PSQFF 183

[Close]

BLAST of Cla006464 vs. NCBI nr
Match: gi|659108868|ref|XP_008454428.1| (PREDICTED: agamous-like MADS-box protein AGL62 [Cucumis melo])

HSP 1 Score: 193.0 bits (489), Expect = 2.8e-46
Identity = 98/115 (85.22%), Postives = 100/115 (86.96%), Query Frame = 1


Query: 1   MERKRSEELNKLRKASQAQCWWELPIEEMEMHQLEQLKASLDELKKNVTQQADRILIQT- 60
           MERKR EELNKLRKASQAQCWWELPIEEMEMHQLEQLKASLDELKKNVTQQADRILIQT 
Sbjct: 112 MERKRGEELNKLRKASQAQCWWELPIEEMEMHQLEQLKASLDELKKNVTQQADRILIQTS 171

Query: 61  SNANPPPQF-----FPTPPTPANPSQQAGLFVVDPKNIISHLPYNYGSYGSRGFF 110
           SNANPP Q       PTP T   P+QQ GLFVVDPKNIISHLP+NYGSYGSRGFF
Sbjct: 172 SNANPPTQLIFPTQIPTPTTTNGPNQQPGLFVVDPKNIISHLPFNYGSYGSRGFF 226

[Close]

BLAST of Cla006464 vs. NCBI nr
Match: gi|449465111|ref|XP_004150272.1| (PREDICTED: agamous-like MADS-box protein AGL62 [Cucumis sativus])

HSP 1 Score: 187.2 bits (474), Expect = 1.5e-44
Identity = 98/117 (83.76%), Postives = 100/117 (85.47%), Query Frame = 1


Query: 1   MERKRSEELNKLRKASQAQCWWELPIEEMEMHQLEQLKASLDELKKNVTQQADRILIQT- 60
           MERKR EELNKLRKASQAQCWWELPIEEMEMHQLEQLKASLDELKKNVTQQADRILIQT 
Sbjct: 112 MERKRGEELNKLRKASQAQCWWELPIEEMEMHQLEQLKASLDELKKNVTQQADRILIQTS 171

Query: 61  SNANPPPQ-FFP------TPPTPANPSQQAGLFVVDPKNIISHLPYNYGSYGSRGFF 110
           SNANPP Q  FP      T  T   P+QQ GLFVVDPKNIISHLP+NYGSYGSRGFF
Sbjct: 172 SNANPPTQLIFPTQIPTQTSTTTNGPNQQPGLFVVDPKNIISHLPFNYGSYGSRGFF 228

[Close]

BLAST of Cla006464 vs. NCBI nr
Match: gi|641830418|gb|KDO49506.1| (hypothetical protein CISIN_1g039654mg [Citrus sinensis])

HSP 1 Score: 110.5 bits (275), Expect = 1.8e-21
Identity = 58/108 (53.70%), Postives = 77/108 (71.30%), Query Frame = 1


Query: 1   MERKRSEELNKLRKASQAQCWWELPIEEMEMHQLEQLKASLDELKKNVTQQADRILIQTS 60
           +E+KR EELN++RKASQAQCWWE PIEE+ + QLEQLK SL+ELKKNV +QA+++LIQ+S
Sbjct: 117 IEKKRGEELNQMRKASQAQCWWEAPIEELNLPQLEQLKMSLEELKKNVGKQAEKMLIQSS 176

Query: 61  NANPPPQFFPTPPT-------PANPSQQAGLFVVDPKNIISHLPYNYG 102
           N   PPQFF    +       P +P+  A +F  +P N++ H  YN G
Sbjct: 177 N---PPQFFAGSSSNAGGMNLPFDPNNNAAVF--NPNNMMPHPGYNPG 219

[Close]

BLAST of Cla006464 vs. NCBI nr
Match: gi|568867465|ref|XP_006487058.1| (PREDICTED: agamous-like MADS-box protein AGL62 [Citrus sinensis])

HSP 1 Score: 109.8 bits (273), Expect = 3.1e-21
Identity = 58/108 (53.70%), Postives = 76/108 (70.37%), Query Frame = 1


Query: 1   MERKRSEELNKLRKASQAQCWWELPIEEMEMHQLEQLKASLDELKKNVTQQADRILIQTS 60
           +E+KR EELN++RKASQAQCWWE PIEE+ + QLEQLK SL+ELKKNV +QA+++LIQ S
Sbjct: 114 IEKKRGEELNQMRKASQAQCWWEAPIEELNLPQLEQLKMSLEELKKNVGKQAEKMLIQCS 173

Query: 61  NANPPPQFFPTPPT-------PANPSQQAGLFVVDPKNIISHLPYNYG 102
           N   PPQFF    +       P +P+  A +F  +P N++ H  YN G
Sbjct: 174 N---PPQFFAGSSSNAGGMNLPFDPNNNAAVF--NPNNMMPHPGYNPG 216

[Close]

BLAST of Cla006464 vs. NCBI nr
Match: gi|567860154|ref|XP_006422731.1| (hypothetical protein CICLE_v10030142mg [Citrus clementina])

HSP 1 Score: 105.9 bits (263), Expect = 4.5e-20
Identity = 57/108 (52.78%), Postives = 76/108 (70.37%), Query Frame = 1


Query: 1   MERKRSEELNKLRKASQAQCWWELPIEEMEMHQLEQLKASLDELKKNVTQQADRILIQTS 60
           +E+KR EELN++RKASQAQCWWE PIEE+ + QLEQLK SL+ELKKNV +QA+++LIQ+S
Sbjct: 116 IEKKRGEELNQMRKASQAQCWWEAPIEELNLPQLEQLKMSLEELKKNVGKQAEKMLIQSS 175

Query: 61  NANPPPQFFPTPPT-------PANPSQQAGLFVVDPKNIISHLPYNYG 102
           N   PPQFF    +       P +P+  A +F  +P N++    YN G
Sbjct: 176 N---PPQFFAGSSSNAGGMNLPFDPNNNATVF--NPNNMMPPPGYNPG 218

The following BLAST results are available for this feature:

BLAST of Cla006464 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KWA9_CUCSA	1.1e-44	83.76	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G000530 PE=4 SV=1	[more]
A0A067EEZ4_CITSI	1.3e-21	53.70	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g039654mg PE=4 SV=1	[more]
V4SG26_9ROSI	3.1e-20	52.78	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10030142mg PE=4 SV=1	[more]
B9S7W9_RICCO	2.5e-17	46.79	Mads box protein, putative OS=Ricinus communis GN=RCOM_1382330 PE=4 SV=1	[more]
M5VUL0_PRUPE	3.2e-17	65.22	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa026127mg PE=4 SV=1	[more]

BLAST of Cla006464 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659108868\|ref\|XP_008454428.1\|	2.8e-46	85.22	PREDICTED: agamous-like MADS-box protein AGL62 [Cucumis melo]	[more]
gi\|449465111\|ref\|XP_004150272.1\|	1.5e-44	83.76	PREDICTED: agamous-like MADS-box protein AGL62 [Cucumis sativus]	[more]
gi\|641830418\|gb\|KDO49506.1\|	1.8e-21	53.70	hypothetical protein CISIN_1g039654mg [Citrus sinensis]	[more]
gi\|568867465\|ref\|XP_006487058.1\|	3.1e-21	53.70	PREDICTED: agamous-like MADS-box protein AGL62 [Citrus sinensis]	[more]
gi\|567860154\|ref\|XP_006422731.1\|	4.5e-20	52.78	hypothetical protein CICLE_v10030142mg [Citrus clementina]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0045944	positive regulation of transcription from RNA polymerase II promoter
biological_process	GO:0000165	MAPK cascade
biological_process	GO:0006351	transcription, DNA-templated
biological_process	GO:0008150	biological_process
biological_process	GO:0007275	multicellular organism development
cellular_component	GO:0005634	nucleus
cellular_component	GO:0005622	intracellular
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0046983	protein dimerization activity
molecular_function	GO:0000977	RNA polymerase II regulatory region sequence-specific DNA binding
molecular_function	GO:0008134	transcription factor binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla006464	Cla006464.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	unknown	Coil	Coil	coord: 27..54 scor
None	No IPR available	PANTHER	PTHR11945	MADS BOX PROTEIN	coord: 1..78 score: 4.7
None	No IPR available	PANTHER	PTHR11945:SF185	AGAMOUS-LIKE MADS-BOX PROTEIN AGL62	coord: 1..78 score: 4.7

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla006464	Cla97C10G192980	Watermelon (97103) v2	wmwmbB051
Cla006464	Csa4G000530	Cucumber (Chinese Long) v2	cuwmB290
Cla006464	MELO3C018030	Melon (DHL92) v3.5.1	mewmB497
Cla006464	ClCG10G009960	Watermelon (Charleston Gray)	wcgwmB051
Cla006464	CSPI04G00040	Wild cucumber (PI 183967)	cpiwmB291
Cla006464	Cucsa.298560	Cucumber (Gy14) v1	cgywmB541
Cla006464	CmaCh04G004250	Cucurbita maxima (Rimu)	cmawmB653
Cla006464	CmoCh04G004570	Cucurbita moschata (Rifu)	cmowmB648
Cla006464	Lsi03G010010	Bottle gourd (USVL1VR-Ls)	lsiwmB240
Cla006464	Cp4.1LG01g02710	Cucurbita pepo (Zucchini)	cpewmB382
Cla006464	CsGy4G000040	Cucumber (Gy14) v2	cgybwmB269
Cla006464	MELO3C018030.2	Melon (DHL92) v3.6.1	medwmB483
Cla006464	Carg08099	Silver-seed gourd	carwmB0366
Cla006464	CsaV3_4G000010	Cucumber (Chinese Long) v3	cucwmB300
Cla006464	Bhi11G000902	Wax gourd	wgowmB007

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla006464	Cucumber (Gy14) v1	cgywmB421
Cla006464	Cucurbita maxima (Rimu)	cmawmB293
Cla006464	Cucurbita moschata (Rifu)	cmowmB287
Cla006464	Cucurbita moschata (Rifu)	cmowmB478
Cla006464	Wild cucumber (PI 183967)	cpiwmB594
Cla006464	Melon (DHL92) v3.5.1	mewmB217
Cla006464	Watermelon (Charleston Gray)	wcgwmB176
Cla006464	Cucumber (Chinese Long) v2	cuwmB295
Cla006464	Cucumber (Chinese Long) v2	cuwmB575
Cla006464	Cucurbita pepo (Zucchini)	cpewmB204
Cla006464	Bottle gourd (USVL1VR-Ls)	lsiwmB245
Cla006464	Cucumber (Gy14) v2	cgybwmB538
Cla006464	Melon (DHL92) v3.6.1	medwmB214
Cla006464	Silver-seed gourd	carwmB0287
Cla006464	Cucumber (Chinese Long) v3	cucwmB602
Cla006464	Watermelon (97103) v2	wmwmbB063
Cla006464	Watermelon (97103) v1	wmwmB054