CmoCh04G004570 (gene) Cucurbita moschata (Rifu)

NameCmoCh04G004570
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionMADS-box transcription factor family protein
LocationCmo_Chr04 : 2268965 .. 2269712 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGGAAGAGTAGAGGCAGGCAAAAGGTTGAGATGGTCAAGATGCCTAATGAGAGCAACCTCCAAGTCACCTTCTCCAAGCGTCGCTCCGGCCTCTTCAAGAAAGCTAGCGAGCTCTGCACCCTTTGCGGTGCCGAGATTGCCATCATCGTCTTCTCCCCCGGGAAGAAAGTCTTCTCCTTTGGTCACCCTTGTGTCGAGGCTCTTATCGAACGCTTCGTCACTCGAAATCCTCCACCGAGCTCTGGTACACTTCAATTGATCGAAGCTCATCGGAATGCTAATGTTCGTGAACTAAATGCACAACTGACTCAAGTGTTGAACCATTTGGAGATGGAGCGGAAACGGGGCGAGGAGTTGAATAAGTTACGAAAGGCTAATCAGGTATTGAATCACTACTCAACTCAAAAGCTTACGTTATAACGAGTTATAGTATGTTTAATTTCTTTTTTATGGGTATTCTTGAAATTAGCCGCAATGTTGGTGGGAACTTCCTATCGAAGAAATGGAATTGCATCAACTCGAACAACTTAAATTGTCGTTGGACGAGCTAAAAAAGAATGTTACGCAACAAGCTGATCGGATTTTGATTCAAACCTCCAATGGCAACCCACCCCCGCAATTCTTCCCGACTCCGACACCTGCAAACCCGAACCAACAAGGCGGTGTCTATGTCGTCGATCAGAAGAACATGATCTCTCATCTTCCCTACAACTATGGCTCCTATGGATCAAGAGGTTTCTTTTGA

mRNA sequence

ATGAGGAAGAGTAGAGGCAGGCAAAAGGTTGAGATGGTCAAGATGCCTAATGAGAGCAACCTCCAAGTCACCTTCTCCAAGCGTCGCTCCGGCCTCTTCAAGAAAGCTAGCGAGCTCTGCACCCTTTGCGGTGCCGAGATTGCCATCATCGTCTTCTCCCCCGGGAAGAAAGTCTTCTCCTTTGGTCACCCTTGTGTCGAGGCTCTTATCGAACGCTTCGTCACTCGAAATCCTCCACCGAGCTCTGGTACACTTCAATTGATCGAAGCTCATCGGAATGCTAATGTTCGTGAACTAAATGCACAACTGACTCAAGTGTTGAACCATTTGGAGATGGAGCGGAAACGGGGCGAGGAGTTGAATAAGTTACGAAAGGCTAATCAGCCGCAATGTTGGTGGGAACTTCCTATCGAAGAAATGGAATTGCATCAACTCGAACAACTTAAATTGTCGTTGGACGAGCTAAAAAAGAATGTTACGCAACAAGCTGATCGGATTTTGATTCAAACCTCCAATGGCAACCCACCCCCGCAATTCTTCCCGACTCCGACACCTGCAAACCCGAACCAACAAGGCGGTGTCTATGTCGTCGATCAGAAGAACATGATCTCTCATCTTCCCTACAACTATGGCTCCTATGGATCAAGAGGTTTCTTTTGA

Coding sequence (CDS)

ATGAGGAAGAGTAGAGGCAGGCAAAAGGTTGAGATGGTCAAGATGCCTAATGAGAGCAACCTCCAAGTCACCTTCTCCAAGCGTCGCTCCGGCCTCTTCAAGAAAGCTAGCGAGCTCTGCACCCTTTGCGGTGCCGAGATTGCCATCATCGTCTTCTCCCCCGGGAAGAAAGTCTTCTCCTTTGGTCACCCTTGTGTCGAGGCTCTTATCGAACGCTTCGTCACTCGAAATCCTCCACCGAGCTCTGGTACACTTCAATTGATCGAAGCTCATCGGAATGCTAATGTTCGTGAACTAAATGCACAACTGACTCAAGTGTTGAACCATTTGGAGATGGAGCGGAAACGGGGCGAGGAGTTGAATAAGTTACGAAAGGCTAATCAGCCGCAATGTTGGTGGGAACTTCCTATCGAAGAAATGGAATTGCATCAACTCGAACAACTTAAATTGTCGTTGGACGAGCTAAAAAAGAATGTTACGCAACAAGCTGATCGGATTTTGATTCAAACCTCCAATGGCAACCCACCCCCGCAATTCTTCCCGACTCCGACACCTGCAAACCCGAACCAACAAGGCGGTGTCTATGTCGTCGATCAGAAGAACATGATCTCTCATCTTCCCTACAACTATGGCTCCTATGGATCAAGAGGTTTCTTTTGA
BLAST of CmoCh04G004570 vs. Swiss-Prot
Match: AGL62_ARATH (Agamous-like MADS-box protein AGL62 OS=Arabidopsis thaliana GN=AGL62 PE=1 SV=1)

HSP 1 Score: 196.1 bits (497), Expect = 4.1e-49
Identity = 104/168 (61.90%), Postives = 130/168 (77.38%), Query Frame = 1

Query: 1   MRKSRGRQKVEMVKMPNESNLQVTFSKRRSGLFKKASELCTLCGAEIAIIVFSPGKKVFS 60
           ++KS+GRQK+EMVKM NESNLQVTFSKRRSGLFKKASELCTLCGAE+AI+VFSPG+KVFS
Sbjct: 2   VKKSKGRQKIEMVKMKNESNLQVTFSKRRSGLFKKASELCTLCGAEVAIVVFSPGRKVFS 61

Query: 61  FGHPCVEALIERFVTRN--PPPSSGTLQLIEAHRNANVRELNAQLTQVLNHLEMERKRGE 120
           FGHP V+++I+RF+  N  PP     +QL E  RN+ V++LN  LTQVL+ LE E+K+ +
Sbjct: 62  FGHPNVDSVIDRFINNNPLPPHQHNNMQLRETRRNSIVQDLNNHLTQVLSQLETEKKKYD 121

Query: 121 ELNKLR-KANQPQCWWELPIEEMELHQLEQLKLSLDELKKNVTQQADR 166
           EL K+R K      WWE P+EE+ L QLE  K +L+ LKK VT +A R
Sbjct: 122 ELKKIREKTKALGNWWEDPVEELALSQLEGFKGNLENLKKVVTVEASR 169

BLAST of CmoCh04G004570 vs. Swiss-Prot
Match: AGL61_ARATH (Agamous-like MADS-box protein AGL61 OS=Arabidopsis thaliana GN=AGL61 PE=1 SV=1)

HSP 1 Score: 160.6 bits (405), Expect = 1.9e-38
Identity = 86/161 (53.42%), Postives = 120/161 (74.53%), Query Frame = 1

Query: 2   RKSRGRQKVEMVKMPNESNLQVTFSKRRSGLFKKASELCTLCGAEIAIIVFSPGKKVFSF 61
           ++S GRQK+ MVK+  ES+ QVTFSKRR+GLFKKASELCTLCGAEI IIVFSP KK FSF
Sbjct: 59  KESIGRQKIPMVKIKKESHRQVTFSKRRAGLFKKASELCTLCGAEIGIIVFSPAKKPFSF 118

Query: 62  GHPCVEALIERFVTRNPPPSSGTLQLIEAHRNANVRELNAQLTQVLNHLEMERKRGEELN 121
           GHP VE++++R+V+RN    + + QL  +   A   ELN QLT +L+ +E E+K+G+ + 
Sbjct: 119 GHPSVESVLDRYVSRNNMSLAQSQQLQGSP--AASCELNMQLTHILSEVEEEKKKGQAME 178

Query: 122 KLRKANQPQC---WWELPIEEMELHQLEQLKLSLDELKKNV 160
           ++RK +  +    WWE P+EEM + QL+++K +L+EL+K V
Sbjct: 179 EMRKESVRRSMINWWEKPVEEMNMVQLQEMKYALEELRKTV 217

BLAST of CmoCh04G004570 vs. Swiss-Prot
Match: AGL28_ARATH (Agamous-like MADS-box protein AGL28 OS=Arabidopsis thaliana GN=AGL28 PE=2 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 6.2e-29
Identity = 74/166 (44.58%), Postives = 102/166 (61.45%), Query Frame = 1

Query: 2   RKSRGRQKVEMVKMPNESNLQVTFSKRRSGLFKKASELCTLCGAEIAIIVFSPGKKVFSF 61
           RK+ GR+K+E+VKM NESNLQVTFSKRRSGLFKK SELCTLC AEIAIIVFSP  K +SF
Sbjct: 3   RKNLGRRKIELVKMTNESNLQVTFSKRRSGLFKKGSELCTLCDAEIAIIVFSPSGKAYSF 62

Query: 62  GHPCVEALIERFVTRNPPPSSGTLQLIEAHRNANVRELNAQLTQVLNHLEMERKRGEELN 121
           GHP V  L++  + R            E+     ++ LN  LT+V+   E E++  + + 
Sbjct: 63  GHPNVNKLLDHSLGR--VIRHNNTNFAESRTKLRIQMLNESLTEVMAEKEKEQETKQSIV 122

Query: 122 KLRKANQ-PQCWWELPIEEMELHQLEQLKLSLDELKKNVTQQADRI 167
           +  + N+  + WW     E+ L Q   +K  L+ LKK V ++  ++
Sbjct: 123 QNERENKDAEKWWRNSPTELNLAQSTSMKCDLEALKKEVDEKVAQL 166

BLAST of CmoCh04G004570 vs. Swiss-Prot
Match: AGL23_ARATH (Agamous-like MADS-box protein AGL23 OS=Arabidopsis thaliana GN=AGL23 PE=2 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 3.1e-28
Identity = 76/172 (44.19%), Postives = 109/172 (63.37%), Query Frame = 1

Query: 1   MRKSRGRQKVEMVKMPNESNLQVTFSKRRSGLFKKASELCTLCGAEIAIIVFSPGKKVFS 60
           ++K+ GR+KVE+VKM  ESNLQVTFSKR++GLFKKASE CTLC A+IA+IVFSP  KVFS
Sbjct: 2   VKKTLGRRKVEIVKMTKESNLQVTFSKRKAGLFKKASEFCTLCDAKIAMIVFSPAGKVFS 61

Query: 61  FGHPCVEALIERFVTRNPPPSSGTLQLIEAHRNANVRELNAQLTQVLNHLEMERKRGEEL 120
           FGHP V+ L++ F  R          L E++   +V+ LN   T+V   +E E+K  +  
Sbjct: 62  FGHPNVDVLLDHF--RGCVVGHNNTNLDESYTKLHVQMLNKSYTEVKAEVEKEQKNKQSR 121

Query: 121 NKLRKANQ-PQCWWELPIEEMELHQLEQLKLSLDELKKNVTQQADRILIQTS 172
            +  + N+  + WW     E+ L Q   +   L +LKK V ++A +++ QT+
Sbjct: 122 AQNERENENAEEWWSKSPLELNLSQSTCMIRVLKDLKKIVDEKAIQLIHQTN 171

BLAST of CmoCh04G004570 vs. Swiss-Prot
Match: AGL29_ARATH (Agamous-like MADS-box protein AGL29 OS=Arabidopsis thaliana GN=AGL29 PE=2 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 1.3e-18
Identity = 60/162 (37.04%), Postives = 96/162 (59.26%), Query Frame = 1

Query: 6   GRQKVEMVKMPNESNLQVTFSKRRSGLFKKASELCTLCGAEIAIIVFSPGKKVFSFGHPC 65
           GR+K++M  + + +  QVTFSKRR+GLFKKASEL TLC AE+ I+VFSPG K FS+G P 
Sbjct: 2   GRRKIKMEMVQDMNTRQVTFSKRRTGLFKKASELATLCNAELGIVVFSPGGKPFSYGKPN 61

Query: 66  VEALIERFVTRNPPPSSGTLQLIEAHRNANVRELNAQLTQVLNHLEMERKRGEE-LNKLR 125
           ++++ ERF+       SG  +    +R   ++ L+ +L  +   +E E++RGE+   KL 
Sbjct: 62  LDSVAERFMREYDDSDSGDEEKSGNYR-PKLKRLSERLDLLNQEVEAEKERGEKSQEKLE 121

Query: 126 KANQPQCWWELPIEEMELHQLEQLKLSLDELKKNVTQQADRI 167
            A   +  ++  IE + L +L + K  L  +   +  Q + +
Sbjct: 122 SAGDER--FKESIETLTLDELNEYKDRLQTVHGRIEGQVNHL 160

BLAST of CmoCh04G004570 vs. TrEMBL
Match: A0A0A0KWA9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G000530 PE=4 SV=1)

HSP 1 Score: 384.4 bits (986), Expect = 9.1e-104
Identity = 201/228 (88.16%), Postives = 207/228 (90.79%), Query Frame = 1

Query: 1   MRKSRGRQKVEMVKMPNESNLQVTFSKRRSGLFKKASELCTLCGAEIAIIVFSPGKKVFS 60
           MRKSRGRQKVEMVKMPNESNLQVTFSKRRSGLFKKASELCTLCGAEIAIIVFSPGKKVFS
Sbjct: 1   MRKSRGRQKVEMVKMPNESNLQVTFSKRRSGLFKKASELCTLCGAEIAIIVFSPGKKVFS 60

Query: 61  FGHPCVEALIERFVTRNPPPSSGTLQLIEAHRNANVRELNAQLTQVLNHLEMERKRGEEL 120
           FGHPCVEALIERFVTRNPPPSSGTLQLIEAHRNANVRELNAQLTQVLN LEMERKRGEEL
Sbjct: 61  FGHPCVEALIERFVTRNPPPSSGTLQLIEAHRNANVRELNAQLTQVLNQLEMERKRGEEL 120

Query: 121 NKLRKANQPQCWWELPIEEMELHQLEQLKLSLDELKKNVTQQADRILIQT-SNGNPPPQ- 180
           NKLRKA+Q QCWWELPIEEME+HQLEQLK SLDELKKNVTQQADRILIQT SN NPP Q 
Sbjct: 121 NKLRKASQAQCWWELPIEEMEMHQLEQLKASLDELKKNVTQQADRILIQTSSNANPPTQL 180

Query: 181 FFPTPTPA-------NPNQQGGVYVVDQKNMISHLPYNYGSYGSRGFF 220
            FPT  P         PNQQ G++VVD KN+ISHLP+NYGSYGSRGFF
Sbjct: 181 IFPTQIPTQTSTTTNGPNQQPGLFVVDPKNIISHLPFNYGSYGSRGFF 228

BLAST of CmoCh04G004570 vs. TrEMBL
Match: A0A067EEZ4_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g039654mg PE=4 SV=1)

HSP 1 Score: 294.7 bits (753), Expect = 9.5e-77
Identity = 152/218 (69.72%), Postives = 181/218 (83.03%), Query Frame = 1

Query: 2   RKSRGRQKVEMVKMPNESNLQVTFSKRRSGLFKKASELCTLCGAEIAIIVFSPGKKVFSF 61
           +KS+GRQKVEMVKMPNESNLQVTFSKRR+GLFKKASELCTLCGA+IAIIVFSPGKKVFSF
Sbjct: 7   KKSKGRQKVEMVKMPNESNLQVTFSKRRTGLFKKASELCTLCGADIAIIVFSPGKKVFSF 66

Query: 62  GHPCVEALIERFVTRNPPPSSGTLQLIEAHRNANVRELNAQLTQVLNHLEMERKRGEELN 121
           GHPCVE +++R++TRNPP  SGT+QLIEAHRNA+VRELN QLTQVLN LE+E+KRGEELN
Sbjct: 67  GHPCVETIVDRYLTRNPPQISGTMQLIEAHRNASVRELNMQLTQVLNQLEIEKKRGEELN 126

Query: 122 KLRKANQPQCWWELPIEEMELHQLEQLKLSLDELKKNVTQQADRILIQTSNGNPPPQFFP 181
           ++RKA+Q QCWWE PIEE+ L QLEQLK+SL+ELKKNV +QA+++LIQ+SN   PPQFF 
Sbjct: 127 QMRKASQAQCWWEAPIEELNLPQLEQLKMSLEELKKNVGKQAEKMLIQSSN---PPQFFA 186

Query: 182 TPT--------PANPNQQGGVYVVDQKNMISHLPYNYG 212
             +        P +PN    V+  +  NM+ H  YN G
Sbjct: 187 GSSSNAGGMNLPFDPNNNAAVF--NPNNMMPHPGYNPG 219

BLAST of CmoCh04G004570 vs. TrEMBL
Match: V4SG26_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10030142mg PE=4 SV=1)

HSP 1 Score: 285.0 bits (728), Expect = 7.6e-74
Identity = 151/220 (68.64%), Postives = 180/220 (81.82%), Query Frame = 1

Query: 2   RKSRGRQKVEMVKMPNESNLQVTFSKRRSGLFKKASELCTLCGAEIAIIVFSPGKKVFSF 61
           +KS+GRQKVEMVKMPNESNLQVTFSKRR+GLFKKASELCTLCGA+IAIIVFSPGKKVFSF
Sbjct: 4   KKSKGRQKVEMVKMPNESNLQVTFSKRRTGLFKKASELCTLCGADIAIIVFSPGKKVFSF 63

Query: 62  GHPCVEALIERFVTRNPPPSSGTLQLIEAHRNANVRELNAQLTQ--VLNHLEMERKRGEE 121
           GHPCVE +++R++TRNPP  SGT+QLIEAHRNA+VRELN QLTQ  VLN LE+E+KRGEE
Sbjct: 64  GHPCVETIVDRYLTRNPPQISGTMQLIEAHRNASVRELNMQLTQVTVLNQLEIEKKRGEE 123

Query: 122 LNKLRKANQPQCWWELPIEEMELHQLEQLKLSLDELKKNVTQQADRILIQTSNGNPPPQF 181
           LN++RKA+Q QCWWE PIEE+ L QLEQLK+SL+ELKKNV +QA+++LIQ+SN   PPQF
Sbjct: 124 LNQMRKASQAQCWWEAPIEELNLPQLEQLKMSLEELKKNVGKQAEKMLIQSSN---PPQF 183

Query: 182 FPTPT--------PANPNQQGGVYVVDQKNMISHLPYNYG 212
           F   +        P +PN    V+  +  NM+    YN G
Sbjct: 184 FAGSSSNAGGMNLPFDPNNNATVF--NPNNMMPPPGYNPG 218

BLAST of CmoCh04G004570 vs. TrEMBL
Match: M5VUL0_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa026127mg PE=4 SV=1)

HSP 1 Score: 274.6 bits (701), Expect = 1.0e-70
Identity = 147/223 (65.92%), Postives = 175/223 (78.48%), Query Frame = 1

Query: 2   RKSRGRQKVEMVKMPNESNLQVTFSKRRSGLFKKASELCTLCGAEIAIIVFSPGKKVFSF 61
           RKS+GRQKVEMVKM NESNLQVTFSKRRSGLFKKASELCTLCGAE+AIIVFSPG+KVFSF
Sbjct: 3   RKSKGRQKVEMVKMANESNLQVTFSKRRSGLFKKASELCTLCGAEVAIIVFSPGRKVFSF 62

Query: 62  GHPCVEALIERFVTRNPP-----PSSGTLQLIEAHRNANVRELNAQLTQVLNHLEMERKR 121
           GHPCVE LI+R+++RNPP      +SGT+QLIEAHRNANVRELN +LTQ+ N LE+E+KR
Sbjct: 63  GHPCVETLIDRYLSRNPPHHHHHQNSGTMQLIEAHRNANVRELNGELTQISNQLEVEKKR 122

Query: 122 GEELNKLRKANQPQCWWELPIEEMELHQLEQLKLSLDELKKNVTQQADRILIQTSNGNPP 181
           G+ELN+++K  Q QCWWE P+E ME+ QLEQLK SL+ELKKNV +QADR+LIQ +N   P
Sbjct: 123 GDELNQVKKVTQAQCWWEGPLEGMEMSQLEQLKTSLEELKKNVARQADRVLIQNTN---P 182

Query: 182 PQFFPTPTPANPNQQGGVYVVDQKNMISHLPYNYGSYGSRGFF 220
            QFF   + ++PN    V       M  HLP +  + G   FF
Sbjct: 183 SQFFVGSSSSHPN----VGFNGNHVMPPHLPPHAWNPGYGRFF 218

BLAST of CmoCh04G004570 vs. TrEMBL
Match: B9S7W9_RICCO (Mads box protein, putative OS=Ricinus communis GN=RCOM_1382330 PE=4 SV=1)

HSP 1 Score: 270.0 bits (689), Expect = 2.5e-69
Identity = 144/222 (64.86%), Postives = 176/222 (79.28%), Query Frame = 1

Query: 2   RKSRGRQKVEMVKMPNESNLQVTFSKRRSGLFKKASELCTLCGAEIAIIVFSPGKKVFSF 61
           ++S+GRQK++MVKMPNESNLQVTFSKRRSGLFKKASEL TLCGAEIAIIVFSPGKKVFSF
Sbjct: 3   KRSKGRQKIDMVKMPNESNLQVTFSKRRSGLFKKASELSTLCGAEIAIIVFSPGKKVFSF 62

Query: 62  GHPCVEALIERFVTRNPPPSSGTLQLIEAHRNANVRELNAQLTQVLNHLEMERKRGEELN 121
           GHP VE +I+RF++RNPP +S T+QLIEAHRNA+VRELNAQLTQVL  LEMERKRGEELN
Sbjct: 63  GHPGVEVVIDRFLSRNPPQNSPTMQLIEAHRNASVRELNAQLTQVLTQLEMERKRGEELN 122

Query: 122 KLRKANQPQCWWELPIEEMELHQLEQLKLSLDELKKNVTQQADRILIQTSNGNPPPQFFP 181
           ++RK  Q +CWWE PI+++ + QLEQL++SL++LKKNV  QAD++LIQ +      QFF 
Sbjct: 123 QMRKTGQNRCWWEAPIDDLTMPQLEQLRMSLEQLKKNVAMQADKLLIQNAQSQ---QFFA 182

Query: 182 T----PTPANPNQQGGVYVVDQKNMISHLPYNYGSYGSRGFF 220
           +    P P  PN     ++ +  NM +   YN   YG RGF+
Sbjct: 183 SSSTAPPPPLPNNN---FMFNIPNMGTLPGYNNFGYG-RGFY 217

BLAST of CmoCh04G004570 vs. TAIR10
Match: AT5G60440.1 (AT5G60440.1 AGAMOUS-like 62)

HSP 1 Score: 196.1 bits (497), Expect = 2.3e-50
Identity = 104/168 (61.90%), Postives = 130/168 (77.38%), Query Frame = 1

Query: 1   MRKSRGRQKVEMVKMPNESNLQVTFSKRRSGLFKKASELCTLCGAEIAIIVFSPGKKVFS 60
           ++KS+GRQK+EMVKM NESNLQVTFSKRRSGLFKKASELCTLCGAE+AI+VFSPG+KVFS
Sbjct: 2   VKKSKGRQKIEMVKMKNESNLQVTFSKRRSGLFKKASELCTLCGAEVAIVVFSPGRKVFS 61

Query: 61  FGHPCVEALIERFVTRN--PPPSSGTLQLIEAHRNANVRELNAQLTQVLNHLEMERKRGE 120
           FGHP V+++I+RF+  N  PP     +QL E  RN+ V++LN  LTQVL+ LE E+K+ +
Sbjct: 62  FGHPNVDSVIDRFINNNPLPPHQHNNMQLRETRRNSIVQDLNNHLTQVLSQLETEKKKYD 121

Query: 121 ELNKLR-KANQPQCWWELPIEEMELHQLEQLKLSLDELKKNVTQQADR 166
           EL K+R K      WWE P+EE+ L QLE  K +L+ LKK VT +A R
Sbjct: 122 ELKKIREKTKALGNWWEDPVEELALSQLEGFKGNLENLKKVVTVEASR 169

BLAST of CmoCh04G004570 vs. TAIR10
Match: AT2G24840.1 (AT2G24840.1 AGAMOUS-like 61)

HSP 1 Score: 160.6 bits (405), Expect = 1.1e-39
Identity = 86/161 (53.42%), Postives = 120/161 (74.53%), Query Frame = 1

Query: 2   RKSRGRQKVEMVKMPNESNLQVTFSKRRSGLFKKASELCTLCGAEIAIIVFSPGKKVFSF 61
           ++S GRQK+ MVK+  ES+ QVTFSKRR+GLFKKASELCTLCGAEI IIVFSP KK FSF
Sbjct: 59  KESIGRQKIPMVKIKKESHRQVTFSKRRAGLFKKASELCTLCGAEIGIIVFSPAKKPFSF 118

Query: 62  GHPCVEALIERFVTRNPPPSSGTLQLIEAHRNANVRELNAQLTQVLNHLEMERKRGEELN 121
           GHP VE++++R+V+RN    + + QL  +   A   ELN QLT +L+ +E E+K+G+ + 
Sbjct: 119 GHPSVESVLDRYVSRNNMSLAQSQQLQGSP--AASCELNMQLTHILSEVEEEKKKGQAME 178

Query: 122 KLRKANQPQC---WWELPIEEMELHQLEQLKLSLDELKKNV 160
           ++RK +  +    WWE P+EEM + QL+++K +L+EL+K V
Sbjct: 179 EMRKESVRRSMINWWEKPVEEMNMVQLQEMKYALEELRKTV 217

BLAST of CmoCh04G004570 vs. TAIR10
Match: AT4G36590.1 (AT4G36590.1 MADS-box transcription factor family protein)

HSP 1 Score: 144.4 bits (363), Expect = 8.1e-35
Identity = 93/227 (40.97%), Postives = 138/227 (60.79%), Query Frame = 1

Query: 1   MRKSRGRQKVEMVKMPNESNLQVTFSKRRSGLFKKASELCTLCGAEIAIIVFSPGKKVFS 60
           +R ++GRQK+EM KM NESNLQVTFSKRR GLFKKASELCTL GAEI +IVFSPG KVFS
Sbjct: 2   VRSTKGRQKIEMKKMENESNLQVTFSKRRFGLFKKASELCTLSGAEILLIVFSPGGKVFS 61

Query: 61  FGHPCVEALIERFVTRNPPPS-----SGTLQLIEAHRNANVRELNAQLTQVLNHLEMERK 120
           FGHP V+ LI RF   N   +     +  LQL+E   + N++ LN  LT+VL + E E++
Sbjct: 62  FGHPSVQELIHRFSNPNHNSAIVHHQNNNLQLVETRPDRNIQYLNNILTEVLANQEKEKQ 121

Query: 121 RGEELNKLRKA-NQPQCWWELPIEEMELHQLEQLKLSLDELKKNVTQQADRILIQTSNGN 180
           +   L+ L+++  Q   W+E  ++++++++  QL  +L ++KK + ++    + Q S  N
Sbjct: 122 KRMVLDLLKESREQVGNWYEKDVKDLDMNETNQLISALQDVKKKLVRE----MSQYSQVN 181

Query: 181 PPPQFFPTPTPANPNQQGGVYVVDQK--------NMI--SHLPYNYG 212
               +F   +        G+ + DQ+        NM+  +H P  +G
Sbjct: 182 VSQNYFGQSSGVIGGGNVGIDLFDQRRNAFNYNPNMVFPNHTPPMFG 224

BLAST of CmoCh04G004570 vs. TAIR10
Match: AT1G01530.1 (AT1G01530.1 AGAMOUS-like 28)

HSP 1 Score: 129.0 bits (323), Expect = 3.5e-30
Identity = 74/166 (44.58%), Postives = 102/166 (61.45%), Query Frame = 1

Query: 2   RKSRGRQKVEMVKMPNESNLQVTFSKRRSGLFKKASELCTLCGAEIAIIVFSPGKKVFSF 61
           RK+ GR+K+E+VKM NESNLQVTFSKRRSGLFKK SELCTLC AEIAIIVFSP  K +SF
Sbjct: 3   RKNLGRRKIELVKMTNESNLQVTFSKRRSGLFKKGSELCTLCDAEIAIIVFSPSGKAYSF 62

Query: 62  GHPCVEALIERFVTRNPPPSSGTLQLIEAHRNANVRELNAQLTQVLNHLEMERKRGEELN 121
           GHP V  L++  + R            E+     ++ LN  LT+V+   E E++  + + 
Sbjct: 63  GHPNVNKLLDHSLGR--VIRHNNTNFAESRTKLRIQMLNESLTEVMAEKEKEQETKQSIV 122

Query: 122 KLRKANQ-PQCWWELPIEEMELHQLEQLKLSLDELKKNVTQQADRI 167
           +  + N+  + WW     E+ L Q   +K  L+ LKK V ++  ++
Sbjct: 123 QNERENKDAEKWWRNSPTELNLAQSTSMKCDLEALKKEVDEKVAQL 166

BLAST of CmoCh04G004570 vs. TAIR10
Match: AT1G65360.1 (AT1G65360.1 AGAMOUS-like 23)

HSP 1 Score: 126.7 bits (317), Expect = 1.7e-29
Identity = 76/172 (44.19%), Postives = 109/172 (63.37%), Query Frame = 1

Query: 1   MRKSRGRQKVEMVKMPNESNLQVTFSKRRSGLFKKASELCTLCGAEIAIIVFSPGKKVFS 60
           ++K+ GR+KVE+VKM  ESNLQVTFSKR++GLFKKASE CTLC A+IA+IVFSP  KVFS
Sbjct: 2   VKKTLGRRKVEIVKMTKESNLQVTFSKRKAGLFKKASEFCTLCDAKIAMIVFSPAGKVFS 61

Query: 61  FGHPCVEALIERFVTRNPPPSSGTLQLIEAHRNANVRELNAQLTQVLNHLEMERKRGEEL 120
           FGHP V+ L++ F  R          L E++   +V+ LN   T+V   +E E+K  +  
Sbjct: 62  FGHPNVDVLLDHF--RGCVVGHNNTNLDESYTKLHVQMLNKSYTEVKAEVEKEQKNKQSR 121

Query: 121 NKLRKANQ-PQCWWELPIEEMELHQLEQLKLSLDELKKNVTQQADRILIQTS 172
            +  + N+  + WW     E+ L Q   +   L +LKK V ++A +++ QT+
Sbjct: 122 AQNERENENAEEWWSKSPLELNLSQSTCMIRVLKDLKKIVDEKAIQLIHQTN 171

BLAST of CmoCh04G004570 vs. NCBI nr
Match: gi|659108868|ref|XP_008454428.1| (PREDICTED: agamous-like MADS-box protein AGL62 [Cucumis melo])

HSP 1 Score: 387.5 bits (994), Expect = 1.6e-104
Identity = 202/226 (89.38%), Postives = 208/226 (92.04%), Query Frame = 1

Query: 1   MRKSRGRQKVEMVKMPNESNLQVTFSKRRSGLFKKASELCTLCGAEIAIIVFSPGKKVFS 60
           MRKSRGRQKVEMVKMPNESNLQVTFSKRRSGLFKKASELCTLCGAEIAIIVFSPGKKVFS
Sbjct: 1   MRKSRGRQKVEMVKMPNESNLQVTFSKRRSGLFKKASELCTLCGAEIAIIVFSPGKKVFS 60

Query: 61  FGHPCVEALIERFVTRNPPPSSGTLQLIEAHRNANVRELNAQLTQVLNHLEMERKRGEEL 120
           FGHPCVEALIERFVTRNPPPSSGTLQLIEAHRNANVRELNAQLTQVLN LEMERKRGEEL
Sbjct: 61  FGHPCVEALIERFVTRNPPPSSGTLQLIEAHRNANVRELNAQLTQVLNQLEMERKRGEEL 120

Query: 121 NKLRKANQPQCWWELPIEEMELHQLEQLKLSLDELKKNVTQQADRILIQT-SNGNPPPQF 180
           NKLRKA+Q QCWWELPIEEME+HQLEQLK SLDELKKNVTQQADRILIQT SN NPP Q 
Sbjct: 121 NKLRKASQAQCWWELPIEEMEMHQLEQLKASLDELKKNVTQQADRILIQTSSNANPPTQL 180

Query: 181 -----FPTPTPAN-PNQQGGVYVVDQKNMISHLPYNYGSYGSRGFF 220
                 PTPT  N PNQQ G++VVD KN+ISHLP+NYGSYGSRGFF
Sbjct: 181 IFPTQIPTPTTTNGPNQQPGLFVVDPKNIISHLPFNYGSYGSRGFF 226

BLAST of CmoCh04G004570 vs. NCBI nr
Match: gi|449465111|ref|XP_004150272.1| (PREDICTED: agamous-like MADS-box protein AGL62 [Cucumis sativus])

HSP 1 Score: 384.4 bits (986), Expect = 1.3e-103
Identity = 201/228 (88.16%), Postives = 207/228 (90.79%), Query Frame = 1

Query: 1   MRKSRGRQKVEMVKMPNESNLQVTFSKRRSGLFKKASELCTLCGAEIAIIVFSPGKKVFS 60
           MRKSRGRQKVEMVKMPNESNLQVTFSKRRSGLFKKASELCTLCGAEIAIIVFSPGKKVFS
Sbjct: 1   MRKSRGRQKVEMVKMPNESNLQVTFSKRRSGLFKKASELCTLCGAEIAIIVFSPGKKVFS 60

Query: 61  FGHPCVEALIERFVTRNPPPSSGTLQLIEAHRNANVRELNAQLTQVLNHLEMERKRGEEL 120
           FGHPCVEALIERFVTRNPPPSSGTLQLIEAHRNANVRELNAQLTQVLN LEMERKRGEEL
Sbjct: 61  FGHPCVEALIERFVTRNPPPSSGTLQLIEAHRNANVRELNAQLTQVLNQLEMERKRGEEL 120

Query: 121 NKLRKANQPQCWWELPIEEMELHQLEQLKLSLDELKKNVTQQADRILIQT-SNGNPPPQ- 180
           NKLRKA+Q QCWWELPIEEME+HQLEQLK SLDELKKNVTQQADRILIQT SN NPP Q 
Sbjct: 121 NKLRKASQAQCWWELPIEEMEMHQLEQLKASLDELKKNVTQQADRILIQTSSNANPPTQL 180

Query: 181 FFPTPTPA-------NPNQQGGVYVVDQKNMISHLPYNYGSYGSRGFF 220
            FPT  P         PNQQ G++VVD KN+ISHLP+NYGSYGSRGFF
Sbjct: 181 IFPTQIPTQTSTTTNGPNQQPGLFVVDPKNIISHLPFNYGSYGSRGFF 228

BLAST of CmoCh04G004570 vs. NCBI nr
Match: gi|641830418|gb|KDO49506.1| (hypothetical protein CISIN_1g039654mg [Citrus sinensis])

HSP 1 Score: 294.7 bits (753), Expect = 1.4e-76
Identity = 152/218 (69.72%), Postives = 181/218 (83.03%), Query Frame = 1

Query: 2   RKSRGRQKVEMVKMPNESNLQVTFSKRRSGLFKKASELCTLCGAEIAIIVFSPGKKVFSF 61
           +KS+GRQKVEMVKMPNESNLQVTFSKRR+GLFKKASELCTLCGA+IAIIVFSPGKKVFSF
Sbjct: 7   KKSKGRQKVEMVKMPNESNLQVTFSKRRTGLFKKASELCTLCGADIAIIVFSPGKKVFSF 66

Query: 62  GHPCVEALIERFVTRNPPPSSGTLQLIEAHRNANVRELNAQLTQVLNHLEMERKRGEELN 121
           GHPCVE +++R++TRNPP  SGT+QLIEAHRNA+VRELN QLTQVLN LE+E+KRGEELN
Sbjct: 67  GHPCVETIVDRYLTRNPPQISGTMQLIEAHRNASVRELNMQLTQVLNQLEIEKKRGEELN 126

Query: 122 KLRKANQPQCWWELPIEEMELHQLEQLKLSLDELKKNVTQQADRILIQTSNGNPPPQFFP 181
           ++RKA+Q QCWWE PIEE+ L QLEQLK+SL+ELKKNV +QA+++LIQ+SN   PPQFF 
Sbjct: 127 QMRKASQAQCWWEAPIEELNLPQLEQLKMSLEELKKNVGKQAEKMLIQSSN---PPQFFA 186

Query: 182 TPT--------PANPNQQGGVYVVDQKNMISHLPYNYG 212
             +        P +PN    V+  +  NM+ H  YN G
Sbjct: 187 GSSSNAGGMNLPFDPNNNAAVF--NPNNMMPHPGYNPG 219

BLAST of CmoCh04G004570 vs. NCBI nr
Match: gi|568867465|ref|XP_006487058.1| (PREDICTED: agamous-like MADS-box protein AGL62 [Citrus sinensis])

HSP 1 Score: 293.5 bits (750), Expect = 3.0e-76
Identity = 152/218 (69.72%), Postives = 179/218 (82.11%), Query Frame = 1

Query: 2   RKSRGRQKVEMVKMPNESNLQVTFSKRRSGLFKKASELCTLCGAEIAIIVFSPGKKVFSF 61
           +KS+GRQKVEMVKMPNESNLQVTFSKRR+GLFKKASELCTLCGA+IAIIVFSPGKKVFSF
Sbjct: 4   KKSKGRQKVEMVKMPNESNLQVTFSKRRTGLFKKASELCTLCGADIAIIVFSPGKKVFSF 63

Query: 62  GHPCVEALIERFVTRNPPPSSGTLQLIEAHRNANVRELNAQLTQVLNHLEMERKRGEELN 121
           GHPCVE +++R++TRNPP  SGT+QLIEAHRNA VRELN QLTQVLN LE+E+KRGEELN
Sbjct: 64  GHPCVETIVDRYLTRNPPQISGTMQLIEAHRNAGVRELNMQLTQVLNQLEIEKKRGEELN 123

Query: 122 KLRKANQPQCWWELPIEEMELHQLEQLKLSLDELKKNVTQQADRILIQTSNGNPPPQFFP 181
           ++RKA+Q QCWWE PIEE+ L QLEQLK+SL+ELKKNV +QA+++LIQ SN   PPQFF 
Sbjct: 124 QMRKASQAQCWWEAPIEELNLPQLEQLKMSLEELKKNVGKQAEKMLIQCSN---PPQFFA 183

Query: 182 TPT--------PANPNQQGGVYVVDQKNMISHLPYNYG 212
             +        P +PN    V+  +  NM+ H  YN G
Sbjct: 184 GSSSNAGGMNLPFDPNNNAAVF--NPNNMMPHPGYNPG 216

BLAST of CmoCh04G004570 vs. NCBI nr
Match: gi|567860154|ref|XP_006422731.1| (hypothetical protein CICLE_v10030142mg [Citrus clementina])

HSP 1 Score: 285.0 bits (728), Expect = 1.1e-73
Identity = 151/220 (68.64%), Postives = 180/220 (81.82%), Query Frame = 1

Query: 2   RKSRGRQKVEMVKMPNESNLQVTFSKRRSGLFKKASELCTLCGAEIAIIVFSPGKKVFSF 61
           +KS+GRQKVEMVKMPNESNLQVTFSKRR+GLFKKASELCTLCGA+IAIIVFSPGKKVFSF
Sbjct: 4   KKSKGRQKVEMVKMPNESNLQVTFSKRRTGLFKKASELCTLCGADIAIIVFSPGKKVFSF 63

Query: 62  GHPCVEALIERFVTRNPPPSSGTLQLIEAHRNANVRELNAQLTQ--VLNHLEMERKRGEE 121
           GHPCVE +++R++TRNPP  SGT+QLIEAHRNA+VRELN QLTQ  VLN LE+E+KRGEE
Sbjct: 64  GHPCVETIVDRYLTRNPPQISGTMQLIEAHRNASVRELNMQLTQVTVLNQLEIEKKRGEE 123

Query: 122 LNKLRKANQPQCWWELPIEEMELHQLEQLKLSLDELKKNVTQQADRILIQTSNGNPPPQF 181
           LN++RKA+Q QCWWE PIEE+ L QLEQLK+SL+ELKKNV +QA+++LIQ+SN   PPQF
Sbjct: 124 LNQMRKASQAQCWWEAPIEELNLPQLEQLKMSLEELKKNVGKQAEKMLIQSSN---PPQF 183

Query: 182 FPTPT--------PANPNQQGGVYVVDQKNMISHLPYNYG 212
           F   +        P +PN    V+  +  NM+    YN G
Sbjct: 184 FAGSSSNAGGMNLPFDPNNNATVF--NPNNMMPPPGYNPG 218

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
AGL62_ARATH4.1e-4961.90Agamous-like MADS-box protein AGL62 OS=Arabidopsis thaliana GN=AGL62 PE=1 SV=1[more]
AGL61_ARATH1.9e-3853.42Agamous-like MADS-box protein AGL61 OS=Arabidopsis thaliana GN=AGL61 PE=1 SV=1[more]
AGL28_ARATH6.2e-2944.58Agamous-like MADS-box protein AGL28 OS=Arabidopsis thaliana GN=AGL28 PE=2 SV=1[more]
AGL23_ARATH3.1e-2844.19Agamous-like MADS-box protein AGL23 OS=Arabidopsis thaliana GN=AGL23 PE=2 SV=1[more]
AGL29_ARATH1.3e-1837.04Agamous-like MADS-box protein AGL29 OS=Arabidopsis thaliana GN=AGL29 PE=2 SV=1[more]
Match NameE-valueIdentityDescription
A0A0A0KWA9_CUCSA9.1e-10488.16Uncharacterized protein OS=Cucumis sativus GN=Csa_4G000530 PE=4 SV=1[more]
A0A067EEZ4_CITSI9.5e-7769.72Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g039654mg PE=4 SV=1[more]
V4SG26_9ROSI7.6e-7468.64Uncharacterized protein OS=Citrus clementina GN=CICLE_v10030142mg PE=4 SV=1[more]
M5VUL0_PRUPE1.0e-7065.92Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa026127mg PE=4 SV=1[more]
B9S7W9_RICCO2.5e-6964.86Mads box protein, putative OS=Ricinus communis GN=RCOM_1382330 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT5G60440.12.3e-5061.90 AGAMOUS-like 62[more]
AT2G24840.11.1e-3953.42 AGAMOUS-like 61[more]
AT4G36590.18.1e-3540.97 MADS-box transcription factor family protein[more]
AT1G01530.13.5e-3044.58 AGAMOUS-like 28[more]
AT1G65360.11.7e-2944.19 AGAMOUS-like 23[more]
Match NameE-valueIdentityDescription
gi|659108868|ref|XP_008454428.1|1.6e-10489.38PREDICTED: agamous-like MADS-box protein AGL62 [Cucumis melo][more]
gi|449465111|ref|XP_004150272.1|1.3e-10388.16PREDICTED: agamous-like MADS-box protein AGL62 [Cucumis sativus][more]
gi|641830418|gb|KDO49506.1|1.4e-7669.72hypothetical protein CISIN_1g039654mg [Citrus sinensis][more]
gi|568867465|ref|XP_006487058.1|3.0e-7669.72PREDICTED: agamous-like MADS-box protein AGL62 [Citrus sinensis][more]
gi|567860154|ref|XP_006422731.1|1.1e-7368.64hypothetical protein CICLE_v10030142mg [Citrus clementina][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR002100TF_MADSbox
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO:0046983protein dimerization activity
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
biological_process GO:0045944 positive regulation of transcription from RNA polymerase II promoter
biological_process GO:0008150 biological_process
cellular_component GO:0005634 nucleus
cellular_component GO:0005575 cellular_component
molecular_function GO:0003677 DNA binding
molecular_function GO:0046983 protein dimerization activity
molecular_function GO:0000977 RNA polymerase II regulatory region sequence-specific DNA binding

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh04G004570.1CmoCh04G004570.1mRNA


Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002100Transcription factor, MADS-boxPRINTSPR00404MADSDOMAINcoord: 42..63
score: 1.3E-18coord: 27..42
score: 1.3E-18coord: 7..27
score: 1.3
IPR002100Transcription factor, MADS-boxPFAMPF00319SRF-TFcoord: 16..61
score: 3.5
IPR002100Transcription factor, MADS-boxSMARTSM00432madsneu2coord: 5..64
score: 1.7
IPR002100Transcription factor, MADS-boxPROFILEPS50066MADS_BOX_2coord: 5..65
score: 23
IPR002100Transcription factor, MADS-boxunknownSSF55455SRF-likecoord: 6..78
score: 1.31
NoneNo IPR availableunknownCoilCoilcoord: 93..120
score: -coord: 138..165
scor
NoneNo IPR availablePANTHERPTHR11945MADS BOX PROTEINcoord: 6..181
score: 1.1E
NoneNo IPR availablePANTHERPTHR11945:SF185AGAMOUS-LIKE MADS-BOX PROTEIN AGL62coord: 6..181
score: 1.1E

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh04G004570Watermelon (97103) v1cmowmB721
CmoCh04G004570Cucurbita pepo (Zucchini)cmocpeB668
CmoCh04G004570Cucurbita pepo (Zucchini)cmocpeB672
CmoCh04G004570Cucurbita pepo (Zucchini)cmocpeB703
CmoCh04G004570Bottle gourd (USVL1VR-Ls)cmolsiB627
CmoCh04G004570Bottle gourd (USVL1VR-Ls)cmolsiB650
CmoCh04G004570Cucumber (Gy14) v2cgybcmoB822
CmoCh04G004570Cucumber (Gy14) v2cgybcmoB948
CmoCh04G004570Melon (DHL92) v3.6.1cmomedB751
CmoCh04G004570Melon (DHL92) v3.6.1cmomedB800
CmoCh04G004570Silver-seed gourdcarcmoB0403
CmoCh04G004570Silver-seed gourdcarcmoB0616
CmoCh04G004570Silver-seed gourdcarcmoB0999
CmoCh04G004570Cucumber (Chinese Long) v3cmocucB0905
CmoCh04G004570Cucumber (Chinese Long) v3cmocucB0910
CmoCh04G004570Watermelon (97103) v2cmowmbB717
CmoCh04G004570Cucurbita moschata (Rifu)cmocmoB125
CmoCh04G004570Cucurbita moschata (Rifu)cmocmoB286
CmoCh04G004570Cucurbita moschata (Rifu)cmocmoB395
CmoCh04G004570Cucurbita moschata (Rifu)cmocmoB477
CmoCh04G004570Cucumber (Gy14) v1cgycmoB0228
CmoCh04G004570Cucumber (Gy14) v1cgycmoB0632
CmoCh04G004570Cucurbita maxima (Rimu)cmacmoB156
CmoCh04G004570Cucurbita maxima (Rimu)cmacmoB338
CmoCh04G004570Cucurbita maxima (Rimu)cmacmoB530
CmoCh04G004570Wild cucumber (PI 183967)cmocpiB777
CmoCh04G004570Cucumber (Chinese Long) v2cmocuB766
CmoCh04G004570Cucumber (Chinese Long) v2cmocuB769
CmoCh04G004570Melon (DHL92) v3.5.1cmomeB665
CmoCh04G004570Melon (DHL92) v3.5.1cmomeB703
CmoCh04G004570Watermelon (Charleston Gray)cmowcgB645