Cp4.1LG01g02710 (gene) Cucurbita pepo (Zucchini)

NameCp4.1LG01g02710
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionTranscription factor, MADS-box
LocationCp4.1LG01 : 2209097 .. 2209833 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGGAAGAGTAGAGGCAGGCAAAAGGTTGAGATGGTCAAGATGCCTAATGAGAGCAACCTCCAAGTCACCTTCTCCAAGCGTCGCTCCGGCCTCTTCAAGAAAGCTAGCGAGCTCTGCACCCTTTGCGGTGCCGAGATTGCCATCATCGTCTTCTCCCCCGGGAAGAAAGTCTTCTCCTTTGGTCACCCTTGTGTCGAGGCTCTTATTGAACGCTTCGTCACTCGAAACCCTCCACCGAGCTCTGGTACACTTCAATTGATCGAAGCTCATCGGAATGCTAATGTTCGTGAACTAAATGCACAATTGACTCAAGTGTTGAACCATTTGGAGATGGAGCGGAAACGGGGCGAGGAGTTGAATAAATTACGAAAGGCTAATCAGGTATTGAATCACTACTAAACTCAAAAGCTTACGTGTTCTGTTTAATTTCTTTTTTTAATGGGTATTCTTGAAATTAGCCGCAATGTTGGTGGGAGCTTCCTATCGAAGAAATGGAATTGCATCAACTCGAACAACTTAAATTGTCGTTGGACGAGCTAAAAAAGAATGTTACGCAACAAGCTGATCGGATTTTGATTCAAACCTCCAATGGCAACCCGCCCCCGCAATTCTTCCCGACTCCGACGCCTGCAAACCCAAACCAACAAGGCGGTGTCTATGTCGTCGATCAGAAGAACATGATCTCTCATCTTCCCTACAACTATGGCTCCTATGGATCAAGAGGTTTCTTTTGA

mRNA sequence

ATGAGGAAGAGTAGAGGCAGGCAAAAGGTTGAGATGGTCAAGATGCCTAATGAGAGCAACCTCCAAGTCACCTTCTCCAAGCGTCGCTCCGGCCTCTTCAAGAAAGCTAGCGAGCTCTGCACCCTTTGCGGTGCCGAGATTGCCATCATCGTCTTCTCCCCCGGGAAGAAAGTCTTCTCCTTTGGTCACCCTTGTGTCGAGGCTCTTATTGAACGCTTCGTCACTCGAAACCCTCCACCGAGCTCTGGTACACTTCAATTGATCGAAGCTCATCGGAATGCTAATGTTCGTGAACTAAATGCACAATTGACTCAAGTGTTGAACCATTTGGAGATGGAGCGGAAACGGGGCGAGGAGTTGAATAAATTACGAAAGGCTAATCAGCCGCAATGTTGGTGGGAGCTTCCTATCGAAGAAATGGAATTGCATCAACTCGAACAACTTAAATTGTCGTTGGACGAGCTAAAAAAGAATGTTACGCAACAAGCTGATCGGATTTTGATTCAAACCTCCAATGGCAACCCGCCCCCGCAATTCTTCCCGACTCCGACGCCTGCAAACCCAAACCAACAAGGCGGTGTCTATGTCGTCGATCAGAAGAACATGATCTCTCATCTTCCCTACAACTATGGCTCCTATGGATCAAGAGGTTTCTTTTGA

Coding sequence (CDS)

ATGAGGAAGAGTAGAGGCAGGCAAAAGGTTGAGATGGTCAAGATGCCTAATGAGAGCAACCTCCAAGTCACCTTCTCCAAGCGTCGCTCCGGCCTCTTCAAGAAAGCTAGCGAGCTCTGCACCCTTTGCGGTGCCGAGATTGCCATCATCGTCTTCTCCCCCGGGAAGAAAGTCTTCTCCTTTGGTCACCCTTGTGTCGAGGCTCTTATTGAACGCTTCGTCACTCGAAACCCTCCACCGAGCTCTGGTACACTTCAATTGATCGAAGCTCATCGGAATGCTAATGTTCGTGAACTAAATGCACAATTGACTCAAGTGTTGAACCATTTGGAGATGGAGCGGAAACGGGGCGAGGAGTTGAATAAATTACGAAAGGCTAATCAGCCGCAATGTTGGTGGGAGCTTCCTATCGAAGAAATGGAATTGCATCAACTCGAACAACTTAAATTGTCGTTGGACGAGCTAAAAAAGAATGTTACGCAACAAGCTGATCGGATTTTGATTCAAACCTCCAATGGCAACCCGCCCCCGCAATTCTTCCCGACTCCGACGCCTGCAAACCCAAACCAACAAGGCGGTGTCTATGTCGTCGATCAGAAGAACATGATCTCTCATCTTCCCTACAACTATGGCTCCTATGGATCAAGAGGTTTCTTTTGA

Protein sequence

MRKSRGRQKVEMVKMPNESNLQVTFSKRRSGLFKKASELCTLCGAEIAIIVFSPGKKVFSFGHPCVEALIERFVTRNPPPSSGTLQLIEAHRNANVRELNAQLTQVLNHLEMERKRGEELNKLRKANQPQCWWELPIEEMELHQLEQLKLSLDELKKNVTQQADRILIQTSNGNPPPQFFPTPTPANPNQQGGVYVVDQKNMISHLPYNYGSYGSRGFF
BLAST of Cp4.1LG01g02710 vs. Swiss-Prot
Match: AGL62_ARATH (Agamous-like MADS-box protein AGL62 OS=Arabidopsis thaliana GN=AGL62 PE=1 SV=1)

HSP 1 Score: 196.1 bits (497), Expect = 4.1e-49
Identity = 104/168 (61.90%), Postives = 130/168 (77.38%), Query Frame = 1

Query: 1   MRKSRGRQKVEMVKMPNESNLQVTFSKRRSGLFKKASELCTLCGAEIAIIVFSPGKKVFS 60
           ++KS+GRQK+EMVKM NESNLQVTFSKRRSGLFKKASELCTLCGAE+AI+VFSPG+KVFS
Sbjct: 2   VKKSKGRQKIEMVKMKNESNLQVTFSKRRSGLFKKASELCTLCGAEVAIVVFSPGRKVFS 61

Query: 61  FGHPCVEALIERFVTRN--PPPSSGTLQLIEAHRNANVRELNAQLTQVLNHLEMERKRGE 120
           FGHP V+++I+RF+  N  PP     +QL E  RN+ V++LN  LTQVL+ LE E+K+ +
Sbjct: 62  FGHPNVDSVIDRFINNNPLPPHQHNNMQLRETRRNSIVQDLNNHLTQVLSQLETEKKKYD 121

Query: 121 ELNKLR-KANQPQCWWELPIEEMELHQLEQLKLSLDELKKNVTQQADR 166
           EL K+R K      WWE P+EE+ L QLE  K +L+ LKK VT +A R
Sbjct: 122 ELKKIREKTKALGNWWEDPVEELALSQLEGFKGNLENLKKVVTVEASR 169

BLAST of Cp4.1LG01g02710 vs. Swiss-Prot
Match: AGL61_ARATH (Agamous-like MADS-box protein AGL61 OS=Arabidopsis thaliana GN=AGL61 PE=1 SV=1)

HSP 1 Score: 160.6 bits (405), Expect = 1.9e-38
Identity = 86/161 (53.42%), Postives = 120/161 (74.53%), Query Frame = 1

Query: 2   RKSRGRQKVEMVKMPNESNLQVTFSKRRSGLFKKASELCTLCGAEIAIIVFSPGKKVFSF 61
           ++S GRQK+ MVK+  ES+ QVTFSKRR+GLFKKASELCTLCGAEI IIVFSP KK FSF
Sbjct: 59  KESIGRQKIPMVKIKKESHRQVTFSKRRAGLFKKASELCTLCGAEIGIIVFSPAKKPFSF 118

Query: 62  GHPCVEALIERFVTRNPPPSSGTLQLIEAHRNANVRELNAQLTQVLNHLEMERKRGEELN 121
           GHP VE++++R+V+RN    + + QL  +   A   ELN QLT +L+ +E E+K+G+ + 
Sbjct: 119 GHPSVESVLDRYVSRNNMSLAQSQQLQGSP--AASCELNMQLTHILSEVEEEKKKGQAME 178

Query: 122 KLRKANQPQC---WWELPIEEMELHQLEQLKLSLDELKKNV 160
           ++RK +  +    WWE P+EEM + QL+++K +L+EL+K V
Sbjct: 179 EMRKESVRRSMINWWEKPVEEMNMVQLQEMKYALEELRKTV 217

BLAST of Cp4.1LG01g02710 vs. Swiss-Prot
Match: AGL28_ARATH (Agamous-like MADS-box protein AGL28 OS=Arabidopsis thaliana GN=AGL28 PE=2 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 6.2e-29
Identity = 74/166 (44.58%), Postives = 102/166 (61.45%), Query Frame = 1

Query: 2   RKSRGRQKVEMVKMPNESNLQVTFSKRRSGLFKKASELCTLCGAEIAIIVFSPGKKVFSF 61
           RK+ GR+K+E+VKM NESNLQVTFSKRRSGLFKK SELCTLC AEIAIIVFSP  K +SF
Sbjct: 3   RKNLGRRKIELVKMTNESNLQVTFSKRRSGLFKKGSELCTLCDAEIAIIVFSPSGKAYSF 62

Query: 62  GHPCVEALIERFVTRNPPPSSGTLQLIEAHRNANVRELNAQLTQVLNHLEMERKRGEELN 121
           GHP V  L++  + R            E+     ++ LN  LT+V+   E E++  + + 
Sbjct: 63  GHPNVNKLLDHSLGR--VIRHNNTNFAESRTKLRIQMLNESLTEVMAEKEKEQETKQSIV 122

Query: 122 KLRKANQ-PQCWWELPIEEMELHQLEQLKLSLDELKKNVTQQADRI 167
           +  + N+  + WW     E+ L Q   +K  L+ LKK V ++  ++
Sbjct: 123 QNERENKDAEKWWRNSPTELNLAQSTSMKCDLEALKKEVDEKVAQL 166

BLAST of Cp4.1LG01g02710 vs. Swiss-Prot
Match: AGL23_ARATH (Agamous-like MADS-box protein AGL23 OS=Arabidopsis thaliana GN=AGL23 PE=2 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 3.1e-28
Identity = 76/172 (44.19%), Postives = 109/172 (63.37%), Query Frame = 1

Query: 1   MRKSRGRQKVEMVKMPNESNLQVTFSKRRSGLFKKASELCTLCGAEIAIIVFSPGKKVFS 60
           ++K+ GR+KVE+VKM  ESNLQVTFSKR++GLFKKASE CTLC A+IA+IVFSP  KVFS
Sbjct: 2   VKKTLGRRKVEIVKMTKESNLQVTFSKRKAGLFKKASEFCTLCDAKIAMIVFSPAGKVFS 61

Query: 61  FGHPCVEALIERFVTRNPPPSSGTLQLIEAHRNANVRELNAQLTQVLNHLEMERKRGEEL 120
           FGHP V+ L++ F  R          L E++   +V+ LN   T+V   +E E+K  +  
Sbjct: 62  FGHPNVDVLLDHF--RGCVVGHNNTNLDESYTKLHVQMLNKSYTEVKAEVEKEQKNKQSR 121

Query: 121 NKLRKANQ-PQCWWELPIEEMELHQLEQLKLSLDELKKNVTQQADRILIQTS 172
            +  + N+  + WW     E+ L Q   +   L +LKK V ++A +++ QT+
Sbjct: 122 AQNERENENAEEWWSKSPLELNLSQSTCMIRVLKDLKKIVDEKAIQLIHQTN 171

BLAST of Cp4.1LG01g02710 vs. Swiss-Prot
Match: AGL29_ARATH (Agamous-like MADS-box protein AGL29 OS=Arabidopsis thaliana GN=AGL29 PE=2 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 1.3e-18
Identity = 60/162 (37.04%), Postives = 96/162 (59.26%), Query Frame = 1

Query: 6   GRQKVEMVKMPNESNLQVTFSKRRSGLFKKASELCTLCGAEIAIIVFSPGKKVFSFGHPC 65
           GR+K++M  + + +  QVTFSKRR+GLFKKASEL TLC AE+ I+VFSPG K FS+G P 
Sbjct: 2   GRRKIKMEMVQDMNTRQVTFSKRRTGLFKKASELATLCNAELGIVVFSPGGKPFSYGKPN 61

Query: 66  VEALIERFVTRNPPPSSGTLQLIEAHRNANVRELNAQLTQVLNHLEMERKRGEE-LNKLR 125
           ++++ ERF+       SG  +    +R   ++ L+ +L  +   +E E++RGE+   KL 
Sbjct: 62  LDSVAERFMREYDDSDSGDEEKSGNYR-PKLKRLSERLDLLNQEVEAEKERGEKSQEKLE 121

Query: 126 KANQPQCWWELPIEEMELHQLEQLKLSLDELKKNVTQQADRI 167
            A   +  ++  IE + L +L + K  L  +   +  Q + +
Sbjct: 122 SAGDER--FKESIETLTLDELNEYKDRLQTVHGRIEGQVNHL 160

BLAST of Cp4.1LG01g02710 vs. TrEMBL
Match: A0A0A0KWA9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G000530 PE=4 SV=1)

HSP 1 Score: 384.4 bits (986), Expect = 9.1e-104
Identity = 201/228 (88.16%), Postives = 207/228 (90.79%), Query Frame = 1

Query: 1   MRKSRGRQKVEMVKMPNESNLQVTFSKRRSGLFKKASELCTLCGAEIAIIVFSPGKKVFS 60
           MRKSRGRQKVEMVKMPNESNLQVTFSKRRSGLFKKASELCTLCGAEIAIIVFSPGKKVFS
Sbjct: 1   MRKSRGRQKVEMVKMPNESNLQVTFSKRRSGLFKKASELCTLCGAEIAIIVFSPGKKVFS 60

Query: 61  FGHPCVEALIERFVTRNPPPSSGTLQLIEAHRNANVRELNAQLTQVLNHLEMERKRGEEL 120
           FGHPCVEALIERFVTRNPPPSSGTLQLIEAHRNANVRELNAQLTQVLN LEMERKRGEEL
Sbjct: 61  FGHPCVEALIERFVTRNPPPSSGTLQLIEAHRNANVRELNAQLTQVLNQLEMERKRGEEL 120

Query: 121 NKLRKANQPQCWWELPIEEMELHQLEQLKLSLDELKKNVTQQADRILIQT-SNGNPPPQ- 180
           NKLRKA+Q QCWWELPIEEME+HQLEQLK SLDELKKNVTQQADRILIQT SN NPP Q 
Sbjct: 121 NKLRKASQAQCWWELPIEEMEMHQLEQLKASLDELKKNVTQQADRILIQTSSNANPPTQL 180

Query: 181 FFPTPTPA-------NPNQQGGVYVVDQKNMISHLPYNYGSYGSRGFF 220
            FPT  P         PNQQ G++VVD KN+ISHLP+NYGSYGSRGFF
Sbjct: 181 IFPTQIPTQTSTTTNGPNQQPGLFVVDPKNIISHLPFNYGSYGSRGFF 228

BLAST of Cp4.1LG01g02710 vs. TrEMBL
Match: A0A067EEZ4_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g039654mg PE=4 SV=1)

HSP 1 Score: 294.7 bits (753), Expect = 9.5e-77
Identity = 152/218 (69.72%), Postives = 181/218 (83.03%), Query Frame = 1

Query: 2   RKSRGRQKVEMVKMPNESNLQVTFSKRRSGLFKKASELCTLCGAEIAIIVFSPGKKVFSF 61
           +KS+GRQKVEMVKMPNESNLQVTFSKRR+GLFKKASELCTLCGA+IAIIVFSPGKKVFSF
Sbjct: 7   KKSKGRQKVEMVKMPNESNLQVTFSKRRTGLFKKASELCTLCGADIAIIVFSPGKKVFSF 66

Query: 62  GHPCVEALIERFVTRNPPPSSGTLQLIEAHRNANVRELNAQLTQVLNHLEMERKRGEELN 121
           GHPCVE +++R++TRNPP  SGT+QLIEAHRNA+VRELN QLTQVLN LE+E+KRGEELN
Sbjct: 67  GHPCVETIVDRYLTRNPPQISGTMQLIEAHRNASVRELNMQLTQVLNQLEIEKKRGEELN 126

Query: 122 KLRKANQPQCWWELPIEEMELHQLEQLKLSLDELKKNVTQQADRILIQTSNGNPPPQFFP 181
           ++RKA+Q QCWWE PIEE+ L QLEQLK+SL+ELKKNV +QA+++LIQ+SN   PPQFF 
Sbjct: 127 QMRKASQAQCWWEAPIEELNLPQLEQLKMSLEELKKNVGKQAEKMLIQSSN---PPQFFA 186

Query: 182 TPT--------PANPNQQGGVYVVDQKNMISHLPYNYG 212
             +        P +PN    V+  +  NM+ H  YN G
Sbjct: 187 GSSSNAGGMNLPFDPNNNAAVF--NPNNMMPHPGYNPG 219

BLAST of Cp4.1LG01g02710 vs. TrEMBL
Match: V4SG26_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10030142mg PE=4 SV=1)

HSP 1 Score: 285.0 bits (728), Expect = 7.6e-74
Identity = 151/220 (68.64%), Postives = 180/220 (81.82%), Query Frame = 1

Query: 2   RKSRGRQKVEMVKMPNESNLQVTFSKRRSGLFKKASELCTLCGAEIAIIVFSPGKKVFSF 61
           +KS+GRQKVEMVKMPNESNLQVTFSKRR+GLFKKASELCTLCGA+IAIIVFSPGKKVFSF
Sbjct: 4   KKSKGRQKVEMVKMPNESNLQVTFSKRRTGLFKKASELCTLCGADIAIIVFSPGKKVFSF 63

Query: 62  GHPCVEALIERFVTRNPPPSSGTLQLIEAHRNANVRELNAQLTQ--VLNHLEMERKRGEE 121
           GHPCVE +++R++TRNPP  SGT+QLIEAHRNA+VRELN QLTQ  VLN LE+E+KRGEE
Sbjct: 64  GHPCVETIVDRYLTRNPPQISGTMQLIEAHRNASVRELNMQLTQVTVLNQLEIEKKRGEE 123

Query: 122 LNKLRKANQPQCWWELPIEEMELHQLEQLKLSLDELKKNVTQQADRILIQTSNGNPPPQF 181
           LN++RKA+Q QCWWE PIEE+ L QLEQLK+SL+ELKKNV +QA+++LIQ+SN   PPQF
Sbjct: 124 LNQMRKASQAQCWWEAPIEELNLPQLEQLKMSLEELKKNVGKQAEKMLIQSSN---PPQF 183

Query: 182 FPTPT--------PANPNQQGGVYVVDQKNMISHLPYNYG 212
           F   +        P +PN    V+  +  NM+    YN G
Sbjct: 184 FAGSSSNAGGMNLPFDPNNNATVF--NPNNMMPPPGYNPG 218

BLAST of Cp4.1LG01g02710 vs. TrEMBL
Match: M5VUL0_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa026127mg PE=4 SV=1)

HSP 1 Score: 274.6 bits (701), Expect = 1.0e-70
Identity = 147/223 (65.92%), Postives = 175/223 (78.48%), Query Frame = 1

Query: 2   RKSRGRQKVEMVKMPNESNLQVTFSKRRSGLFKKASELCTLCGAEIAIIVFSPGKKVFSF 61
           RKS+GRQKVEMVKM NESNLQVTFSKRRSGLFKKASELCTLCGAE+AIIVFSPG+KVFSF
Sbjct: 3   RKSKGRQKVEMVKMANESNLQVTFSKRRSGLFKKASELCTLCGAEVAIIVFSPGRKVFSF 62

Query: 62  GHPCVEALIERFVTRNPP-----PSSGTLQLIEAHRNANVRELNAQLTQVLNHLEMERKR 121
           GHPCVE LI+R+++RNPP      +SGT+QLIEAHRNANVRELN +LTQ+ N LE+E+KR
Sbjct: 63  GHPCVETLIDRYLSRNPPHHHHHQNSGTMQLIEAHRNANVRELNGELTQISNQLEVEKKR 122

Query: 122 GEELNKLRKANQPQCWWELPIEEMELHQLEQLKLSLDELKKNVTQQADRILIQTSNGNPP 181
           G+ELN+++K  Q QCWWE P+E ME+ QLEQLK SL+ELKKNV +QADR+LIQ +N   P
Sbjct: 123 GDELNQVKKVTQAQCWWEGPLEGMEMSQLEQLKTSLEELKKNVARQADRVLIQNTN---P 182

Query: 182 PQFFPTPTPANPNQQGGVYVVDQKNMISHLPYNYGSYGSRGFF 220
            QFF   + ++PN    V       M  HLP +  + G   FF
Sbjct: 183 SQFFVGSSSSHPN----VGFNGNHVMPPHLPPHAWNPGYGRFF 218

BLAST of Cp4.1LG01g02710 vs. TrEMBL
Match: B9S7W9_RICCO (Mads box protein, putative OS=Ricinus communis GN=RCOM_1382330 PE=4 SV=1)

HSP 1 Score: 270.0 bits (689), Expect = 2.5e-69
Identity = 144/222 (64.86%), Postives = 176/222 (79.28%), Query Frame = 1

Query: 2   RKSRGRQKVEMVKMPNESNLQVTFSKRRSGLFKKASELCTLCGAEIAIIVFSPGKKVFSF 61
           ++S+GRQK++MVKMPNESNLQVTFSKRRSGLFKKASEL TLCGAEIAIIVFSPGKKVFSF
Sbjct: 3   KRSKGRQKIDMVKMPNESNLQVTFSKRRSGLFKKASELSTLCGAEIAIIVFSPGKKVFSF 62

Query: 62  GHPCVEALIERFVTRNPPPSSGTLQLIEAHRNANVRELNAQLTQVLNHLEMERKRGEELN 121
           GHP VE +I+RF++RNPP +S T+QLIEAHRNA+VRELNAQLTQVL  LEMERKRGEELN
Sbjct: 63  GHPGVEVVIDRFLSRNPPQNSPTMQLIEAHRNASVRELNAQLTQVLTQLEMERKRGEELN 122

Query: 122 KLRKANQPQCWWELPIEEMELHQLEQLKLSLDELKKNVTQQADRILIQTSNGNPPPQFFP 181
           ++RK  Q +CWWE PI+++ + QLEQL++SL++LKKNV  QAD++LIQ +      QFF 
Sbjct: 123 QMRKTGQNRCWWEAPIDDLTMPQLEQLRMSLEQLKKNVAMQADKLLIQNAQSQ---QFFA 182

Query: 182 T----PTPANPNQQGGVYVVDQKNMISHLPYNYGSYGSRGFF 220
           +    P P  PN     ++ +  NM +   YN   YG RGF+
Sbjct: 183 SSSTAPPPPLPNNN---FMFNIPNMGTLPGYNNFGYG-RGFY 217

BLAST of Cp4.1LG01g02710 vs. TAIR10
Match: AT5G60440.1 (AT5G60440.1 AGAMOUS-like 62)

HSP 1 Score: 196.1 bits (497), Expect = 2.3e-50
Identity = 104/168 (61.90%), Postives = 130/168 (77.38%), Query Frame = 1

Query: 1   MRKSRGRQKVEMVKMPNESNLQVTFSKRRSGLFKKASELCTLCGAEIAIIVFSPGKKVFS 60
           ++KS+GRQK+EMVKM NESNLQVTFSKRRSGLFKKASELCTLCGAE+AI+VFSPG+KVFS
Sbjct: 2   VKKSKGRQKIEMVKMKNESNLQVTFSKRRSGLFKKASELCTLCGAEVAIVVFSPGRKVFS 61

Query: 61  FGHPCVEALIERFVTRN--PPPSSGTLQLIEAHRNANVRELNAQLTQVLNHLEMERKRGE 120
           FGHP V+++I+RF+  N  PP     +QL E  RN+ V++LN  LTQVL+ LE E+K+ +
Sbjct: 62  FGHPNVDSVIDRFINNNPLPPHQHNNMQLRETRRNSIVQDLNNHLTQVLSQLETEKKKYD 121

Query: 121 ELNKLR-KANQPQCWWELPIEEMELHQLEQLKLSLDELKKNVTQQADR 166
           EL K+R K      WWE P+EE+ L QLE  K +L+ LKK VT +A R
Sbjct: 122 ELKKIREKTKALGNWWEDPVEELALSQLEGFKGNLENLKKVVTVEASR 169

BLAST of Cp4.1LG01g02710 vs. TAIR10
Match: AT2G24840.1 (AT2G24840.1 AGAMOUS-like 61)

HSP 1 Score: 160.6 bits (405), Expect = 1.1e-39
Identity = 86/161 (53.42%), Postives = 120/161 (74.53%), Query Frame = 1

Query: 2   RKSRGRQKVEMVKMPNESNLQVTFSKRRSGLFKKASELCTLCGAEIAIIVFSPGKKVFSF 61
           ++S GRQK+ MVK+  ES+ QVTFSKRR+GLFKKASELCTLCGAEI IIVFSP KK FSF
Sbjct: 59  KESIGRQKIPMVKIKKESHRQVTFSKRRAGLFKKASELCTLCGAEIGIIVFSPAKKPFSF 118

Query: 62  GHPCVEALIERFVTRNPPPSSGTLQLIEAHRNANVRELNAQLTQVLNHLEMERKRGEELN 121
           GHP VE++++R+V+RN    + + QL  +   A   ELN QLT +L+ +E E+K+G+ + 
Sbjct: 119 GHPSVESVLDRYVSRNNMSLAQSQQLQGSP--AASCELNMQLTHILSEVEEEKKKGQAME 178

Query: 122 KLRKANQPQC---WWELPIEEMELHQLEQLKLSLDELKKNV 160
           ++RK +  +    WWE P+EEM + QL+++K +L+EL+K V
Sbjct: 179 EMRKESVRRSMINWWEKPVEEMNMVQLQEMKYALEELRKTV 217

BLAST of Cp4.1LG01g02710 vs. TAIR10
Match: AT4G36590.1 (AT4G36590.1 MADS-box transcription factor family protein)

HSP 1 Score: 144.4 bits (363), Expect = 8.1e-35
Identity = 93/227 (40.97%), Postives = 138/227 (60.79%), Query Frame = 1

Query: 1   MRKSRGRQKVEMVKMPNESNLQVTFSKRRSGLFKKASELCTLCGAEIAIIVFSPGKKVFS 60
           +R ++GRQK+EM KM NESNLQVTFSKRR GLFKKASELCTL GAEI +IVFSPG KVFS
Sbjct: 2   VRSTKGRQKIEMKKMENESNLQVTFSKRRFGLFKKASELCTLSGAEILLIVFSPGGKVFS 61

Query: 61  FGHPCVEALIERFVTRNPPPS-----SGTLQLIEAHRNANVRELNAQLTQVLNHLEMERK 120
           FGHP V+ LI RF   N   +     +  LQL+E   + N++ LN  LT+VL + E E++
Sbjct: 62  FGHPSVQELIHRFSNPNHNSAIVHHQNNNLQLVETRPDRNIQYLNNILTEVLANQEKEKQ 121

Query: 121 RGEELNKLRKA-NQPQCWWELPIEEMELHQLEQLKLSLDELKKNVTQQADRILIQTSNGN 180
           +   L+ L+++  Q   W+E  ++++++++  QL  +L ++KK + ++    + Q S  N
Sbjct: 122 KRMVLDLLKESREQVGNWYEKDVKDLDMNETNQLISALQDVKKKLVRE----MSQYSQVN 181

Query: 181 PPPQFFPTPTPANPNQQGGVYVVDQK--------NMI--SHLPYNYG 212
               +F   +        G+ + DQ+        NM+  +H P  +G
Sbjct: 182 VSQNYFGQSSGVIGGGNVGIDLFDQRRNAFNYNPNMVFPNHTPPMFG 224

BLAST of Cp4.1LG01g02710 vs. TAIR10
Match: AT1G01530.1 (AT1G01530.1 AGAMOUS-like 28)

HSP 1 Score: 129.0 bits (323), Expect = 3.5e-30
Identity = 74/166 (44.58%), Postives = 102/166 (61.45%), Query Frame = 1

Query: 2   RKSRGRQKVEMVKMPNESNLQVTFSKRRSGLFKKASELCTLCGAEIAIIVFSPGKKVFSF 61
           RK+ GR+K+E+VKM NESNLQVTFSKRRSGLFKK SELCTLC AEIAIIVFSP  K +SF
Sbjct: 3   RKNLGRRKIELVKMTNESNLQVTFSKRRSGLFKKGSELCTLCDAEIAIIVFSPSGKAYSF 62

Query: 62  GHPCVEALIERFVTRNPPPSSGTLQLIEAHRNANVRELNAQLTQVLNHLEMERKRGEELN 121
           GHP V  L++  + R            E+     ++ LN  LT+V+   E E++  + + 
Sbjct: 63  GHPNVNKLLDHSLGR--VIRHNNTNFAESRTKLRIQMLNESLTEVMAEKEKEQETKQSIV 122

Query: 122 KLRKANQ-PQCWWELPIEEMELHQLEQLKLSLDELKKNVTQQADRI 167
           +  + N+  + WW     E+ L Q   +K  L+ LKK V ++  ++
Sbjct: 123 QNERENKDAEKWWRNSPTELNLAQSTSMKCDLEALKKEVDEKVAQL 166

BLAST of Cp4.1LG01g02710 vs. TAIR10
Match: AT1G65360.1 (AT1G65360.1 AGAMOUS-like 23)

HSP 1 Score: 126.7 bits (317), Expect = 1.7e-29
Identity = 76/172 (44.19%), Postives = 109/172 (63.37%), Query Frame = 1

Query: 1   MRKSRGRQKVEMVKMPNESNLQVTFSKRRSGLFKKASELCTLCGAEIAIIVFSPGKKVFS 60
           ++K+ GR+KVE+VKM  ESNLQVTFSKR++GLFKKASE CTLC A+IA+IVFSP  KVFS
Sbjct: 2   VKKTLGRRKVEIVKMTKESNLQVTFSKRKAGLFKKASEFCTLCDAKIAMIVFSPAGKVFS 61

Query: 61  FGHPCVEALIERFVTRNPPPSSGTLQLIEAHRNANVRELNAQLTQVLNHLEMERKRGEEL 120
           FGHP V+ L++ F  R          L E++   +V+ LN   T+V   +E E+K  +  
Sbjct: 62  FGHPNVDVLLDHF--RGCVVGHNNTNLDESYTKLHVQMLNKSYTEVKAEVEKEQKNKQSR 121

Query: 121 NKLRKANQ-PQCWWELPIEEMELHQLEQLKLSLDELKKNVTQQADRILIQTS 172
            +  + N+  + WW     E+ L Q   +   L +LKK V ++A +++ QT+
Sbjct: 122 AQNERENENAEEWWSKSPLELNLSQSTCMIRVLKDLKKIVDEKAIQLIHQTN 171

BLAST of Cp4.1LG01g02710 vs. NCBI nr
Match: gi|659108868|ref|XP_008454428.1| (PREDICTED: agamous-like MADS-box protein AGL62 [Cucumis melo])

HSP 1 Score: 387.5 bits (994), Expect = 1.6e-104
Identity = 202/226 (89.38%), Postives = 208/226 (92.04%), Query Frame = 1

Query: 1   MRKSRGRQKVEMVKMPNESNLQVTFSKRRSGLFKKASELCTLCGAEIAIIVFSPGKKVFS 60
           MRKSRGRQKVEMVKMPNESNLQVTFSKRRSGLFKKASELCTLCGAEIAIIVFSPGKKVFS
Sbjct: 1   MRKSRGRQKVEMVKMPNESNLQVTFSKRRSGLFKKASELCTLCGAEIAIIVFSPGKKVFS 60

Query: 61  FGHPCVEALIERFVTRNPPPSSGTLQLIEAHRNANVRELNAQLTQVLNHLEMERKRGEEL 120
           FGHPCVEALIERFVTRNPPPSSGTLQLIEAHRNANVRELNAQLTQVLN LEMERKRGEEL
Sbjct: 61  FGHPCVEALIERFVTRNPPPSSGTLQLIEAHRNANVRELNAQLTQVLNQLEMERKRGEEL 120

Query: 121 NKLRKANQPQCWWELPIEEMELHQLEQLKLSLDELKKNVTQQADRILIQT-SNGNPPPQF 180
           NKLRKA+Q QCWWELPIEEME+HQLEQLK SLDELKKNVTQQADRILIQT SN NPP Q 
Sbjct: 121 NKLRKASQAQCWWELPIEEMEMHQLEQLKASLDELKKNVTQQADRILIQTSSNANPPTQL 180

Query: 181 -----FPTPTPAN-PNQQGGVYVVDQKNMISHLPYNYGSYGSRGFF 220
                 PTPT  N PNQQ G++VVD KN+ISHLP+NYGSYGSRGFF
Sbjct: 181 IFPTQIPTPTTTNGPNQQPGLFVVDPKNIISHLPFNYGSYGSRGFF 226

BLAST of Cp4.1LG01g02710 vs. NCBI nr
Match: gi|449465111|ref|XP_004150272.1| (PREDICTED: agamous-like MADS-box protein AGL62 [Cucumis sativus])

HSP 1 Score: 384.4 bits (986), Expect = 1.3e-103
Identity = 201/228 (88.16%), Postives = 207/228 (90.79%), Query Frame = 1

Query: 1   MRKSRGRQKVEMVKMPNESNLQVTFSKRRSGLFKKASELCTLCGAEIAIIVFSPGKKVFS 60
           MRKSRGRQKVEMVKMPNESNLQVTFSKRRSGLFKKASELCTLCGAEIAIIVFSPGKKVFS
Sbjct: 1   MRKSRGRQKVEMVKMPNESNLQVTFSKRRSGLFKKASELCTLCGAEIAIIVFSPGKKVFS 60

Query: 61  FGHPCVEALIERFVTRNPPPSSGTLQLIEAHRNANVRELNAQLTQVLNHLEMERKRGEEL 120
           FGHPCVEALIERFVTRNPPPSSGTLQLIEAHRNANVRELNAQLTQVLN LEMERKRGEEL
Sbjct: 61  FGHPCVEALIERFVTRNPPPSSGTLQLIEAHRNANVRELNAQLTQVLNQLEMERKRGEEL 120

Query: 121 NKLRKANQPQCWWELPIEEMELHQLEQLKLSLDELKKNVTQQADRILIQT-SNGNPPPQ- 180
           NKLRKA+Q QCWWELPIEEME+HQLEQLK SLDELKKNVTQQADRILIQT SN NPP Q 
Sbjct: 121 NKLRKASQAQCWWELPIEEMEMHQLEQLKASLDELKKNVTQQADRILIQTSSNANPPTQL 180

Query: 181 FFPTPTPA-------NPNQQGGVYVVDQKNMISHLPYNYGSYGSRGFF 220
            FPT  P         PNQQ G++VVD KN+ISHLP+NYGSYGSRGFF
Sbjct: 181 IFPTQIPTQTSTTTNGPNQQPGLFVVDPKNIISHLPFNYGSYGSRGFF 228

BLAST of Cp4.1LG01g02710 vs. NCBI nr
Match: gi|641830418|gb|KDO49506.1| (hypothetical protein CISIN_1g039654mg [Citrus sinensis])

HSP 1 Score: 294.7 bits (753), Expect = 1.4e-76
Identity = 152/218 (69.72%), Postives = 181/218 (83.03%), Query Frame = 1

Query: 2   RKSRGRQKVEMVKMPNESNLQVTFSKRRSGLFKKASELCTLCGAEIAIIVFSPGKKVFSF 61
           +KS+GRQKVEMVKMPNESNLQVTFSKRR+GLFKKASELCTLCGA+IAIIVFSPGKKVFSF
Sbjct: 7   KKSKGRQKVEMVKMPNESNLQVTFSKRRTGLFKKASELCTLCGADIAIIVFSPGKKVFSF 66

Query: 62  GHPCVEALIERFVTRNPPPSSGTLQLIEAHRNANVRELNAQLTQVLNHLEMERKRGEELN 121
           GHPCVE +++R++TRNPP  SGT+QLIEAHRNA+VRELN QLTQVLN LE+E+KRGEELN
Sbjct: 67  GHPCVETIVDRYLTRNPPQISGTMQLIEAHRNASVRELNMQLTQVLNQLEIEKKRGEELN 126

Query: 122 KLRKANQPQCWWELPIEEMELHQLEQLKLSLDELKKNVTQQADRILIQTSNGNPPPQFFP 181
           ++RKA+Q QCWWE PIEE+ L QLEQLK+SL+ELKKNV +QA+++LIQ+SN   PPQFF 
Sbjct: 127 QMRKASQAQCWWEAPIEELNLPQLEQLKMSLEELKKNVGKQAEKMLIQSSN---PPQFFA 186

Query: 182 TPT--------PANPNQQGGVYVVDQKNMISHLPYNYG 212
             +        P +PN    V+  +  NM+ H  YN G
Sbjct: 187 GSSSNAGGMNLPFDPNNNAAVF--NPNNMMPHPGYNPG 219

BLAST of Cp4.1LG01g02710 vs. NCBI nr
Match: gi|568867465|ref|XP_006487058.1| (PREDICTED: agamous-like MADS-box protein AGL62 [Citrus sinensis])

HSP 1 Score: 293.5 bits (750), Expect = 3.0e-76
Identity = 152/218 (69.72%), Postives = 179/218 (82.11%), Query Frame = 1

Query: 2   RKSRGRQKVEMVKMPNESNLQVTFSKRRSGLFKKASELCTLCGAEIAIIVFSPGKKVFSF 61
           +KS+GRQKVEMVKMPNESNLQVTFSKRR+GLFKKASELCTLCGA+IAIIVFSPGKKVFSF
Sbjct: 4   KKSKGRQKVEMVKMPNESNLQVTFSKRRTGLFKKASELCTLCGADIAIIVFSPGKKVFSF 63

Query: 62  GHPCVEALIERFVTRNPPPSSGTLQLIEAHRNANVRELNAQLTQVLNHLEMERKRGEELN 121
           GHPCVE +++R++TRNPP  SGT+QLIEAHRNA VRELN QLTQVLN LE+E+KRGEELN
Sbjct: 64  GHPCVETIVDRYLTRNPPQISGTMQLIEAHRNAGVRELNMQLTQVLNQLEIEKKRGEELN 123

Query: 122 KLRKANQPQCWWELPIEEMELHQLEQLKLSLDELKKNVTQQADRILIQTSNGNPPPQFFP 181
           ++RKA+Q QCWWE PIEE+ L QLEQLK+SL+ELKKNV +QA+++LIQ SN   PPQFF 
Sbjct: 124 QMRKASQAQCWWEAPIEELNLPQLEQLKMSLEELKKNVGKQAEKMLIQCSN---PPQFFA 183

Query: 182 TPT--------PANPNQQGGVYVVDQKNMISHLPYNYG 212
             +        P +PN    V+  +  NM+ H  YN G
Sbjct: 184 GSSSNAGGMNLPFDPNNNAAVF--NPNNMMPHPGYNPG 216

BLAST of Cp4.1LG01g02710 vs. NCBI nr
Match: gi|567860154|ref|XP_006422731.1| (hypothetical protein CICLE_v10030142mg [Citrus clementina])

HSP 1 Score: 285.0 bits (728), Expect = 1.1e-73
Identity = 151/220 (68.64%), Postives = 180/220 (81.82%), Query Frame = 1

Query: 2   RKSRGRQKVEMVKMPNESNLQVTFSKRRSGLFKKASELCTLCGAEIAIIVFSPGKKVFSF 61
           +KS+GRQKVEMVKMPNESNLQVTFSKRR+GLFKKASELCTLCGA+IAIIVFSPGKKVFSF
Sbjct: 4   KKSKGRQKVEMVKMPNESNLQVTFSKRRTGLFKKASELCTLCGADIAIIVFSPGKKVFSF 63

Query: 62  GHPCVEALIERFVTRNPPPSSGTLQLIEAHRNANVRELNAQLTQ--VLNHLEMERKRGEE 121
           GHPCVE +++R++TRNPP  SGT+QLIEAHRNA+VRELN QLTQ  VLN LE+E+KRGEE
Sbjct: 64  GHPCVETIVDRYLTRNPPQISGTMQLIEAHRNASVRELNMQLTQVTVLNQLEIEKKRGEE 123

Query: 122 LNKLRKANQPQCWWELPIEEMELHQLEQLKLSLDELKKNVTQQADRILIQTSNGNPPPQF 181
           LN++RKA+Q QCWWE PIEE+ L QLEQLK+SL+ELKKNV +QA+++LIQ+SN   PPQF
Sbjct: 124 LNQMRKASQAQCWWEAPIEELNLPQLEQLKMSLEELKKNVGKQAEKMLIQSSN---PPQF 183

Query: 182 FPTPT--------PANPNQQGGVYVVDQKNMISHLPYNYG 212
           F   +        P +PN    V+  +  NM+    YN G
Sbjct: 184 FAGSSSNAGGMNLPFDPNNNATVF--NPNNMMPPPGYNPG 218

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
AGL62_ARATH4.1e-4961.90Agamous-like MADS-box protein AGL62 OS=Arabidopsis thaliana GN=AGL62 PE=1 SV=1[more]
AGL61_ARATH1.9e-3853.42Agamous-like MADS-box protein AGL61 OS=Arabidopsis thaliana GN=AGL61 PE=1 SV=1[more]
AGL28_ARATH6.2e-2944.58Agamous-like MADS-box protein AGL28 OS=Arabidopsis thaliana GN=AGL28 PE=2 SV=1[more]
AGL23_ARATH3.1e-2844.19Agamous-like MADS-box protein AGL23 OS=Arabidopsis thaliana GN=AGL23 PE=2 SV=1[more]
AGL29_ARATH1.3e-1837.04Agamous-like MADS-box protein AGL29 OS=Arabidopsis thaliana GN=AGL29 PE=2 SV=1[more]
Match NameE-valueIdentityDescription
A0A0A0KWA9_CUCSA9.1e-10488.16Uncharacterized protein OS=Cucumis sativus GN=Csa_4G000530 PE=4 SV=1[more]
A0A067EEZ4_CITSI9.5e-7769.72Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g039654mg PE=4 SV=1[more]
V4SG26_9ROSI7.6e-7468.64Uncharacterized protein OS=Citrus clementina GN=CICLE_v10030142mg PE=4 SV=1[more]
M5VUL0_PRUPE1.0e-7065.92Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa026127mg PE=4 SV=1[more]
B9S7W9_RICCO2.5e-6964.86Mads box protein, putative OS=Ricinus communis GN=RCOM_1382330 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT5G60440.12.3e-5061.90 AGAMOUS-like 62[more]
AT2G24840.11.1e-3953.42 AGAMOUS-like 61[more]
AT4G36590.18.1e-3540.97 MADS-box transcription factor family protein[more]
AT1G01530.13.5e-3044.58 AGAMOUS-like 28[more]
AT1G65360.11.7e-2944.19 AGAMOUS-like 23[more]
Match NameE-valueIdentityDescription
gi|659108868|ref|XP_008454428.1|1.6e-10489.38PREDICTED: agamous-like MADS-box protein AGL62 [Cucumis melo][more]
gi|449465111|ref|XP_004150272.1|1.3e-10388.16PREDICTED: agamous-like MADS-box protein AGL62 [Cucumis sativus][more]
gi|641830418|gb|KDO49506.1|1.4e-7669.72hypothetical protein CISIN_1g039654mg [Citrus sinensis][more]
gi|568867465|ref|XP_006487058.1|3.0e-7669.72PREDICTED: agamous-like MADS-box protein AGL62 [Citrus sinensis][more]
gi|567860154|ref|XP_006422731.1|1.1e-7368.64hypothetical protein CICLE_v10030142mg [Citrus clementina][more]
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0046983protein dimerization activity
GO:0003677DNA binding
Vocabulary: INTERPRO
TermDefinition
IPR002100TF_MADSbox
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
biological_process GO:0045944 positive regulation of transcription from RNA polymerase II promoter
biological_process GO:0008150 biological_process
cellular_component GO:0005634 nucleus
cellular_component GO:0005575 cellular_component
molecular_function GO:0003677 DNA binding
molecular_function GO:0046983 protein dimerization activity
molecular_function GO:0000977 RNA polymerase II regulatory region sequence-specific DNA binding

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG01g02710.1Cp4.1LG01g02710.1mRNA


Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002100Transcription factor, MADS-boxPRINTSPR00404MADSDOMAINcoord: 42..63
score: 1.3E-18coord: 27..42
score: 1.3E-18coord: 7..27
score: 1.3
IPR002100Transcription factor, MADS-boxPFAMPF00319SRF-TFcoord: 16..61
score: 3.5
IPR002100Transcription factor, MADS-boxSMARTSM00432madsneu2coord: 5..64
score: 1.7
IPR002100Transcription factor, MADS-boxPROFILEPS50066MADS_BOX_2coord: 5..65
score: 23
IPR002100Transcription factor, MADS-boxunknownSSF55455SRF-likecoord: 6..78
score: 1.31
NoneNo IPR availableunknownCoilCoilcoord: 93..120
score: -coord: 138..165
scor
NoneNo IPR availablePANTHERPTHR11945MADS BOX PROTEINcoord: 6..181
score: 1.1E
NoneNo IPR availablePANTHERPTHR11945:SF185AGAMOUS-LIKE MADS-BOX PROTEIN AGL62coord: 6..181
score: 1.1E

The following gene(s) are paralogous to this gene:

None