Cucsa.298560 (gene) Cucumber (Gy14) v1

Overview
NameCucsa.298560
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v1)
DescriptionMADS-box transcription factor family protein
Locationscaffold02901 : 156321 .. 157143 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGGAAGAGCAGAGGTAGGCAAAAGGTGGAGATGGTGAAGATGCCAAATGAGAGCAACCTTCAGGTCACCTTCTCCAAGCGTCGCTCCGGCCTCTTCAAGAAAGCTAGCGAGCTCTGCACCCTCTGTGGTGCCGAGATTGCCATCATTGTCTTCTCACCTGGGAAGAAGGTCTTTTCCTTTGGCCACCCTTGCGTCGAGGCTCTCATCGAGCGCTTTGTCACACGAAACCCTCCACCCAGTTCTGGTACGCTGCAGCTTATCGAAGCTCACCGGAATGCTAATGTTCGAGAACTTAATGCTCAACTTACTCAAGTTCTCAACCAACTAGAAATGGAGCGGAAGCGTGGGGAAGAGTTGAACAAACTACGCAAGGCAAGCCAGGTATTATACACACACACATACACCACCTTTAAGATATCTCCTCCGTCGTTTGAAACTGAGATCATCTCTCTTGTCTTCTCCTCCCCAATTTGTTTATCATCTTTCTTAAAAGAACCATTTACGAGTTAAAGTTTTTGTTCTATTAAGGCACAATGTTGGTGGGAGCTTCCCATAGAAGAAATGGAAATGCATCAACTAGAACAACTTAAAGCTTCGTTGGATGAGCTAAAGAAGAATGTGACTCAACAAGCAGATCGGATTTTGATTCAGACTTCTTCTAATGCCAATCCCCCGACGCAGTTGATCTTCCCGACTCAGATTCCGACTCAAACATCAACAACAACAAATGGCCCCAACCAGCAACCCGGGCTTTTCGTCGTGGATCCTAAGAACATCATCTCCCATCTTCCCTTCAACTATGGTTCCTATGGATCAAGAG

mRNA sequence

ATGAGGAAGAGCAGAGGTAGGCAAAAGGTGGAGATGGTGAAGATGCCAAATGAGAGCAACCTTCAGGTCACCTTCTCCAAGCGTCGCTCCGGCCTCTTCAAGAAAGCTAGCGAGCTCTGCACCCTCTGTGGTGCCGAGATTGCCATCATTGTCTTCTCACCTGGGAAGAAGGTCTTTTCCTTTGGCCACCCTTGCGTCGAGGCTCTCATCGAGCGCTTTGTCACACGAAACCCTCCACCCAGTTCTGGTACGCTGCAGCTTATCGAAGCTCACCGGAATGCTAATGTTCGAGAACTTAATGCTCAACTTACTCAAGTTCTCAACCAACTAGAAATGGAGCGGAAGCGTGGGGAAGAGTTGAACAAACTACGCAAGGCAAGCCAGGCACAATGTTGGTGGGAGCTTCCCATAGAAGAAATGGAAATGCATCAACTAGAACAACTTAAAGCTTCGTTGGATGAGCTAAAGAAGAATGTGACTCAACAAGCAGATCGGATTTTGATTCAGACTTCTTCTAATGCCAATCCCCCGACGCAGTTGATCTTCCCGACTCAGATTCCGACTCAAACATCAACAACAACAAATGGCCCCAACCAGCAACCCGGGCTTTTCGTCGTGGATCCTAAGAACATCATCTCCCATCTTCCCTTCAACTATGGTTCCTATGGATCAAGAG

Coding sequence (CDS)

ATGAGGAAGAGCAGAGGTAGGCAAAAGGTGGAGATGGTGAAGATGCCAAATGAGAGCAACCTTCAGGTCACCTTCTCCAAGCGTCGCTCCGGCCTCTTCAAGAAAGCTAGCGAGCTCTGCACCCTCTGTGGTGCCGAGATTGCCATCATTGTCTTCTCACCTGGGAAGAAGGTCTTTTCCTTTGGCCACCCTTGCGTCGAGGCTCTCATCGAGCGCTTTGTCACACGAAACCCTCCACCCAGTTCTGGTACGCTGCAGCTTATCGAAGCTCACCGGAATGCTAATGTTCGAGAACTTAATGCTCAACTTACTCAAGTTCTCAACCAACTAGAAATGGAGCGGAAGCGTGGGGAAGAGTTGAACAAACTACGCAAGGCAAGCCAGGCACAATGTTGGTGGGAGCTTCCCATAGAAGAAATGGAAATGCATCAACTAGAACAACTTAAAGCTTCGTTGGATGAGCTAAAGAAGAATGTGACTCAACAAGCAGATCGGATTTTGATTCAGACTTCTTCTAATGCCAATCCCCCGACGCAGTTGATCTTCCCGACTCAGATTCCGACTCAAACATCAACAACAACAAATGGCCCCAACCAGCAACCCGGGCTTTTCGTCGTGGATCCTAAGAACATCATCTCCCATCTTCCCTTCAACTATGGTTCCTATGGATCAAGAG

Protein sequence

MRKSRGRQKVEMVKMPNESNLQVTFSKRRSGLFKKASELCTLCGAEIAIIVFSPGKKVFSFGHPCVEALIERFVTRNPPPSSGTLQLIEAHRNANVRELNAQLTQVLNQLEMERKRGEELNKLRKASQAQCWWELPIEEMEMHQLEQLKASLDELKKNVTQQADRILIQTSSNANPPTQLIFPTQIPTQTSTTTNGPNQQPGLFVVDPKNIISHLPFNYGSYGSRX
Homology
[Close]
BLAST of Cucsa.298560 vs. Swiss-Prot
Match: AGL62_ARATH (Agamous-like MADS-box protein AGL62 OS=Arabidopsis thaliana GN=AGL62 PE=1 SV=1)

HSP 1 Score: 207.2 bits (526), Expect = 1.9e-52
Identity = 104/168 (61.90%), Postives = 134/168 (79.76%), Query Frame = 1 

Query: 1   MRKSRGRQKVEMVKMPNESNLQVTFSKRRSGLFKKASELCTLCGAEIAIIVFSPGKKVFS 60
           ++KS+GRQK+EMVKM NESNLQVTFSKRRSGLFKKASELCTLCGAE+AI+VFSPG+KVFS
Sbjct: 2   VKKSKGRQKIEMVKMKNESNLQVTFSKRRSGLFKKASELCTLCGAEVAIVVFSPGRKVFS 61

Query: 61  FGHPCVEALIERFVTRN--PPPSSGTLQLIEAHRNANVRELNAQLTQVLNQLEMERKRGE 120
           FGHP V+++I+RF+  N  PP     +QL E  RN+ V++LN  LTQVL+QLE E+K+ +
Sbjct: 62  FGHPNVDSVIDRFINNNPLPPHQHNNMQLRETRRNSIVQDLNNHLTQVLSQLETEKKKYD 121

Query: 121 ELNKLRKASQA-QCWWELPIEEMEMHQLEQLKASLDELKKNVTQQADR 166
           EL K+R+ ++A   WWE P+EE+ + QLE  K +L+ LKK VT +A R
Sbjct: 122 ELKKIREKTKALGNWWEDPVEELALSQLEGFKGNLENLKKVVTVEASR 169

[Close]
BLAST of Cucsa.298560 vs. Swiss-Prot
Match: AGL61_ARATH (Agamous-like MADS-box protein AGL61 OS=Arabidopsis thaliana GN=AGL61 PE=1 SV=1)

HSP 1 Score: 169.9 bits (429), Expect = 3.3e-41
Identity = 88/161 (54.66%), Postives = 120/161 (74.53%), Query Frame = 1 

Query: 2   RKSRGRQKVEMVKMPNESNLQVTFSKRRSGLFKKASELCTLCGAEIAIIVFSPGKKVFSF 61
           ++S GRQK+ MVK+  ES+ QVTFSKRR+GLFKKASELCTLCGAEI IIVFSP KK FSF
Sbjct: 59  KESIGRQKIPMVKIKKESHRQVTFSKRRAGLFKKASELCTLCGAEIGIIVFSPAKKPFSF 118

Query: 62  GHPCVEALIERFVTRNPPPSSGTLQLIEAHRNANVRELNAQLTQVLNQLEMERKRGEELN 121
           GHP VE++++R+V+RN    + + QL      A   ELN QLT +L+++E E+K+G+ + 
Sbjct: 119 GHPSVESVLDRYVSRNNMSLAQSQQL--QGSPAASCELNMQLTHILSEVEEEKKKGQAME 178

Query: 122 KLRKASQAQC---WWELPIEEMEMHQLEQLKASLDELKKNV 160
           ++RK S  +    WWE P+EEM M QL+++K +L+EL+K V
Sbjct: 179 EMRKESVRRSMINWWEKPVEEMNMVQLQEMKYALEELRKTV 217

[Close]
BLAST of Cucsa.298560 vs. Swiss-Prot
Match: AGL28_ARATH (Agamous-like MADS-box protein AGL28 OS=Arabidopsis thaliana GN=AGL28 PE=2 SV=1)

HSP 1 Score: 140.6 bits (353), Expect = 2.1e-32
Identity = 89/235 (37.87%), Postives = 125/235 (53.19%), Query Frame = 1 

Query: 2   RKSRGRQKVEMVKMPNESNLQVTFSKRRSGLFKKASELCTLCGAEIAIIVFSPGKKVFSF 61
           RK+ GR+K+E+VKM NESNLQVTFSKRRSGLFKK SELCTLC AEIAIIVFSP  K +SF
Sbjct: 3   RKNLGRRKIELVKMTNESNLQVTFSKRRSGLFKKGSELCTLCDAEIAIIVFSPSGKAYSF 62

Query: 62  GHPCVEALIERFVTRNPPPSSGTLQLIEAHRNANVRELNAQLTQVLNQLEMERKRGEEL- 121
           GHP V  L++  + R            E+     ++ LN  LT+V+ + E E++  + + 
Sbjct: 63  GHPNVNKLLDHSLGR--VIRHNNTNFAESRTKLRIQMLNESLTEVMAEKEKEQETKQSIV 122

Query: 122 NKLRKASQAQCWWELPIEEMEMHQLEQLKASLDELKKNVTQQADRI-------LIQTSSN 181
              R+   A+ WW     E+ + Q   +K  L+ LKK V ++  ++        + +SSN
Sbjct: 123 QNERENKDAEKWWRNSPTELNLAQSTSMKCDLEALKKEVDEKVAQLHHRNLNFYVGSSSN 182

Query: 182 ANPPTQLIFPTQIPT------QTSTTTNGPNQQPGLFVVDPKNIISHLPFNYGSY 223
              P   +    I T      Q   +T+ P    G       N+++  P  Y SY
Sbjct: 183 VAAPA-AVSGGNISTNHGFFDQNGNSTSAPTLPFGF------NVMNRTPAGYNSY 228

[Close]
BLAST of Cucsa.298560 vs. Swiss-Prot
Match: AGL23_ARATH (Agamous-like MADS-box protein AGL23 OS=Arabidopsis thaliana GN=AGL23 PE=2 SV=1)

HSP 1 Score: 136.3 bits (342), Expect = 4.0e-31
Identity = 77/174 (44.25%), Postives = 110/174 (63.22%), Query Frame = 1 

Query: 1   MRKSRGRQKVEMVKMPNESNLQVTFSKRRSGLFKKASELCTLCGAEIAIIVFSPGKKVFS 60
           ++K+ GR+KVE+VKM  ESNLQVTFSKR++GLFKKASE CTLC A+IA+IVFSP  KVFS
Sbjct: 2   VKKTLGRRKVEIVKMTKESNLQVTFSKRKAGLFKKASEFCTLCDAKIAMIVFSPAGKVFS 61

Query: 61  FGHPCVEALIERFVTRNPPPSSGTLQLIEAHRNANVRELNAQLTQVLNQLEMERK-RGEE 120
           FGHP V+ L++ F  R          L E++   +V+ LN   T+V  ++E E+K +   
Sbjct: 62  FGHPNVDVLLDHF--RGCVVGHNNTNLDESYTKLHVQMLNKSYTEVKAEVEKEQKNKQSR 121

Query: 121 LNKLRKASQAQCWWELPIEEMEMHQLEQLKASLDELKKNVTQQADRILIQTSSN 174
               R+   A+ WW     E+ + Q   +   L +LKK V ++A +++ QT+ N
Sbjct: 122 AQNERENENAEEWWSKSPLELNLSQSTCMIRVLKDLKKIVDEKAIQLIHQTNPN 173

[Close]
BLAST of Cucsa.298560 vs. Swiss-Prot
Match: AGL29_ARATH (Agamous-like MADS-box protein AGL29 OS=Arabidopsis thaliana GN=AGL29 PE=2 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 1.9e-20
Identity = 59/162 (36.42%), Postives = 97/162 (59.88%), Query Frame = 1 

Query: 6   GRQKVEMVKMPNESNLQVTFSKRRSGLFKKASELCTLCGAEIAIIVFSPGKKVFSFGHPC 65
           GR+K++M  + + +  QVTFSKRR+GLFKKASEL TLC AE+ I+VFSPG K FS+G P 
Sbjct: 2   GRRKIKMEMVQDMNTRQVTFSKRRTGLFKKASELATLCNAELGIVVFSPGGKPFSYGKPN 61

Query: 66  VEALIERFVTRNPPPSSGTLQLIEAHRNANVRELNAQLTQVLNQLEMERKRGEE-LNKLR 125
           ++++ ERF+       SG  +    +R   ++ L+ +L  +  ++E E++RGE+   KL 
Sbjct: 62  LDSVAERFMREYDDSDSGDEEKSGNYR-PKLKRLSERLDLLNQEVEAEKERGEKSQEKLE 121

Query: 126 KASQAQCWWELPIEEMEMHQLEQLKASLDELKKNVTQQADRI 167
            A   +  ++  IE + + +L + K  L  +   +  Q + +
Sbjct: 122 SAGDER--FKESIETLTLDELNEYKDRLQTVHGRIEGQVNHL 160

[Close]
BLAST of Cucsa.298560 vs. TrEMBL
Match: A0A0A0KWA9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G000530 PE=4 SV=1)

HSP 1 Score: 452.2 bits (1162), Expect = 3.7e-124
Identity = 225/225 (100.00%), Postives = 225/225 (100.00%), Query Frame = 1 

Query: 1   MRKSRGRQKVEMVKMPNESNLQVTFSKRRSGLFKKASELCTLCGAEIAIIVFSPGKKVFS 60
           MRKSRGRQKVEMVKMPNESNLQVTFSKRRSGLFKKASELCTLCGAEIAIIVFSPGKKVFS
Sbjct: 1   MRKSRGRQKVEMVKMPNESNLQVTFSKRRSGLFKKASELCTLCGAEIAIIVFSPGKKVFS 60

Query: 61  FGHPCVEALIERFVTRNPPPSSGTLQLIEAHRNANVRELNAQLTQVLNQLEMERKRGEEL 120
           FGHPCVEALIERFVTRNPPPSSGTLQLIEAHRNANVRELNAQLTQVLNQLEMERKRGEEL
Sbjct: 61  FGHPCVEALIERFVTRNPPPSSGTLQLIEAHRNANVRELNAQLTQVLNQLEMERKRGEEL 120

Query: 121 NKLRKASQAQCWWELPIEEMEMHQLEQLKASLDELKKNVTQQADRILIQTSSNANPPTQL 180
           NKLRKASQAQCWWELPIEEMEMHQLEQLKASLDELKKNVTQQADRILIQTSSNANPPTQL
Sbjct: 121 NKLRKASQAQCWWELPIEEMEMHQLEQLKASLDELKKNVTQQADRILIQTSSNANPPTQL 180

Query: 181 IFPTQIPTQTSTTTNGPNQQPGLFVVDPKNIISHLPFNYGSYGSR 226
           IFPTQIPTQTSTTTNGPNQQPGLFVVDPKNIISHLPFNYGSYGSR
Sbjct: 181 IFPTQIPTQTSTTTNGPNQQPGLFVVDPKNIISHLPFNYGSYGSR 225

[Close]
BLAST of Cucsa.298560 vs. TrEMBL
Match: A0A067EEZ4_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g039654mg PE=4 SV=1)

HSP 1 Score: 295.8 bits (756), Expect = 4.4e-77
Identity = 152/225 (67.56%), Postives = 182/225 (80.89%), Query Frame = 1 

Query: 2   RKSRGRQKVEMVKMPNESNLQVTFSKRRSGLFKKASELCTLCGAEIAIIVFSPGKKVFSF 61
           +KS+GRQKVEMVKMPNESNLQVTFSKRR+GLFKKASELCTLCGA+IAIIVFSPGKKVFSF
Sbjct: 7   KKSKGRQKVEMVKMPNESNLQVTFSKRRTGLFKKASELCTLCGADIAIIVFSPGKKVFSF 66

Query: 62  GHPCVEALIERFVTRNPPPSSGTLQLIEAHRNANVRELNAQLTQVLNQLEMERKRGEELN 121
           GHPCVE +++R++TRNPP  SGT+QLIEAHRNA+VRELN QLTQVLNQLE+E+KRGEELN
Sbjct: 67  GHPCVETIVDRYLTRNPPQISGTMQLIEAHRNASVRELNMQLTQVLNQLEIEKKRGEELN 126

Query: 122 KLRKASQAQCWWELPIEEMEMHQLEQLKASLDELKKNVTQQADRILIQTSSNANPPTQLI 181
           ++RKASQAQCWWE PIEE+ + QLEQLK SL+ELKKNV +QA+++LIQ+S   NPP    
Sbjct: 127 QMRKASQAQCWWEAPIEELNLPQLEQLKMSLEELKKNVGKQAEKMLIQSS---NPP---- 186

Query: 182 FPTQIPTQTSTTTNG------PNQQPGLFVVDPKNIISHLPFNYG 221
              Q    +S+   G      PN    +F  +P N++ H  +N G
Sbjct: 187 ---QFFAGSSSNAGGMNLPFDPNNNAAVF--NPNNMMPHPGYNPG 219

[Close]
BLAST of Cucsa.298560 vs. TrEMBL
Match: V4SG26_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10030142mg PE=4 SV=1)

HSP 1 Score: 286.2 bits (731), Expect = 3.5e-74
Identity = 141/178 (79.21%), Postives = 164/178 (92.13%), Query Frame = 1 

Query: 2   RKSRGRQKVEMVKMPNESNLQVTFSKRRSGLFKKASELCTLCGAEIAIIVFSPGKKVFSF 61
           +KS+GRQKVEMVKMPNESNLQVTFSKRR+GLFKKASELCTLCGA+IAIIVFSPGKKVFSF
Sbjct: 4   KKSKGRQKVEMVKMPNESNLQVTFSKRRTGLFKKASELCTLCGADIAIIVFSPGKKVFSF 63

Query: 62  GHPCVEALIERFVTRNPPPSSGTLQLIEAHRNANVRELNAQLTQ--VLNQLEMERKRGEE 121
           GHPCVE +++R++TRNPP  SGT+QLIEAHRNA+VRELN QLTQ  VLNQLE+E+KRGEE
Sbjct: 64  GHPCVETIVDRYLTRNPPQISGTMQLIEAHRNASVRELNMQLTQVTVLNQLEIEKKRGEE 123

Query: 122 LNKLRKASQAQCWWELPIEEMEMHQLEQLKASLDELKKNVTQQADRILIQTSSNANPP 178
           LN++RKASQAQCWWE PIEE+ + QLEQLK SL+ELKKNV +QA+++LIQ+S   NPP
Sbjct: 124 LNQMRKASQAQCWWEAPIEELNLPQLEQLKMSLEELKKNVGKQAEKMLIQSS---NPP 178

[Close]
BLAST of Cucsa.298560 vs. TrEMBL
Match: M5VUL0_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa026127mg PE=4 SV=1)

HSP 1 Score: 280.0 bits (715), Expect = 2.5e-72
Identity = 138/180 (76.67%), Postives = 160/180 (88.89%), Query Frame = 1 

Query: 2   RKSRGRQKVEMVKMPNESNLQVTFSKRRSGLFKKASELCTLCGAEIAIIVFSPGKKVFSF 61
           RKS+GRQKVEMVKM NESNLQVTFSKRRSGLFKKASELCTLCGAE+AIIVFSPG+KVFSF
Sbjct: 3   RKSKGRQKVEMVKMANESNLQVTFSKRRSGLFKKASELCTLCGAEVAIIVFSPGRKVFSF 62

Query: 62  GHPCVEALIERFVTRNPP-----PSSGTLQLIEAHRNANVRELNAQLTQVLNQLEMERKR 121
           GHPCVE LI+R+++RNPP      +SGT+QLIEAHRNANVRELN +LTQ+ NQLE+E+KR
Sbjct: 63  GHPCVETLIDRYLSRNPPHHHHHQNSGTMQLIEAHRNANVRELNGELTQISNQLEVEKKR 122

Query: 122 GEELNKLRKASQAQCWWELPIEEMEMHQLEQLKASLDELKKNVTQQADRILIQTSSNANP 177
           G+ELN+++K +QAQCWWE P+E MEM QLEQLK SL+ELKKNV +QADR+LIQ   N NP
Sbjct: 123 GDELNQVKKVTQAQCWWEGPLEGMEMSQLEQLKTSLEELKKNVARQADRVLIQ---NTNP 179

[Close]
BLAST of Cucsa.298560 vs. TrEMBL
Match: B9S7W9_RICCO (Mads box protein, putative OS=Ricinus communis GN=RCOM_1382330 PE=4 SV=1)

HSP 1 Score: 271.6 bits (693), Expect = 8.9e-70
Identity = 135/185 (72.97%), Postives = 159/185 (85.95%), Query Frame = 1 

Query: 2   RKSRGRQKVEMVKMPNESNLQVTFSKRRSGLFKKASELCTLCGAEIAIIVFSPGKKVFSF 61
           ++S+GRQK++MVKMPNESNLQVTFSKRRSGLFKKASEL TLCGAEIAIIVFSPGKKVFSF
Sbjct: 3   KRSKGRQKIDMVKMPNESNLQVTFSKRRSGLFKKASELSTLCGAEIAIIVFSPGKKVFSF 62

Query: 62  GHPCVEALIERFVTRNPPPSSGTLQLIEAHRNANVRELNAQLTQVLNQLEMERKRGEELN 121
           GHP VE +I+RF++RNPP +S T+QLIEAHRNA+VRELNAQLTQVL QLEMERKRGEELN
Sbjct: 63  GHPGVEVVIDRFLSRNPPQNSPTMQLIEAHRNASVRELNAQLTQVLTQLEMERKRGEELN 122

Query: 122 KLRKASQAQCWWELPIEEMEMHQLEQLKASLDELKKNVTQQADRILIQ---------TSS 178
           ++RK  Q +CWWE PI+++ M QLEQL+ SL++LKKNV  QAD++LIQ         +SS
Sbjct: 123 QMRKTGQNRCWWEAPIDDLTMPQLEQLRMSLEQLKKNVAMQADKLLIQNAQSQQFFASSS 182

[Close]
BLAST of Cucsa.298560 vs. TAIR10
Match: AT5G60440.1 (AT5G60440.1 AGAMOUS-like 62)

HSP 1 Score: 207.2 bits (526), Expect = 1.0e-53
Identity = 104/168 (61.90%), Postives = 134/168 (79.76%), Query Frame = 1 

Query: 1   MRKSRGRQKVEMVKMPNESNLQVTFSKRRSGLFKKASELCTLCGAEIAIIVFSPGKKVFS 60
           ++KS+GRQK+EMVKM NESNLQVTFSKRRSGLFKKASELCTLCGAE+AI+VFSPG+KVFS
Sbjct: 2   VKKSKGRQKIEMVKMKNESNLQVTFSKRRSGLFKKASELCTLCGAEVAIVVFSPGRKVFS 61

Query: 61  FGHPCVEALIERFVTRN--PPPSSGTLQLIEAHRNANVRELNAQLTQVLNQLEMERKRGE 120
           FGHP V+++I+RF+  N  PP     +QL E  RN+ V++LN  LTQVL+QLE E+K+ +
Sbjct: 62  FGHPNVDSVIDRFINNNPLPPHQHNNMQLRETRRNSIVQDLNNHLTQVLSQLETEKKKYD 121

Query: 121 ELNKLRKASQA-QCWWELPIEEMEMHQLEQLKASLDELKKNVTQQADR 166
           EL K+R+ ++A   WWE P+EE+ + QLE  K +L+ LKK VT +A R
Sbjct: 122 ELKKIREKTKALGNWWEDPVEELALSQLEGFKGNLENLKKVVTVEASR 169

[Close]
BLAST of Cucsa.298560 vs. TAIR10
Match: AT2G24840.1 (AT2G24840.1 AGAMOUS-like 61)

HSP 1 Score: 169.9 bits (429), Expect = 1.8e-42
Identity = 88/161 (54.66%), Postives = 120/161 (74.53%), Query Frame = 1 

Query: 2   RKSRGRQKVEMVKMPNESNLQVTFSKRRSGLFKKASELCTLCGAEIAIIVFSPGKKVFSF 61
           ++S GRQK+ MVK+  ES+ QVTFSKRR+GLFKKASELCTLCGAEI IIVFSP KK FSF
Sbjct: 59  KESIGRQKIPMVKIKKESHRQVTFSKRRAGLFKKASELCTLCGAEIGIIVFSPAKKPFSF 118

Query: 62  GHPCVEALIERFVTRNPPPSSGTLQLIEAHRNANVRELNAQLTQVLNQLEMERKRGEELN 121
           GHP VE++++R+V+RN    + + QL      A   ELN QLT +L+++E E+K+G+ + 
Sbjct: 119 GHPSVESVLDRYVSRNNMSLAQSQQL--QGSPAASCELNMQLTHILSEVEEEKKKGQAME 178

Query: 122 KLRKASQAQC---WWELPIEEMEMHQLEQLKASLDELKKNV 160
           ++RK S  +    WWE P+EEM M QL+++K +L+EL+K V
Sbjct: 179 EMRKESVRRSMINWWEKPVEEMNMVQLQEMKYALEELRKTV 217

[Close]
BLAST of Cucsa.298560 vs. TAIR10
Match: AT4G36590.1 (AT4G36590.1 MADS-box transcription factor family protein)

HSP 1 Score: 154.1 bits (388), Expect = 1.1e-37
Identity = 82/168 (48.81%), Postives = 117/168 (69.64%), Query Frame = 1 

Query: 1   MRKSRGRQKVEMVKMPNESNLQVTFSKRRSGLFKKASELCTLCGAEIAIIVFSPGKKVFS 60
           +R ++GRQK+EM KM NESNLQVTFSKRR GLFKKASELCTL GAEI +IVFSPG KVFS
Sbjct: 2   VRSTKGRQKIEMKKMENESNLQVTFSKRRFGLFKKASELCTLSGAEILLIVFSPGGKVFS 61

Query: 61  FGHPCVEALIERFVTRNPPPS-----SGTLQLIEAHRNANVRELNAQLTQVLNQLEMERK 120
           FGHP V+ LI RF   N   +     +  LQL+E   + N++ LN  LT+VL   E E++
Sbjct: 62  FGHPSVQELIHRFSNPNHNSAIVHHQNNNLQLVETRPDRNIQYLNNILTEVLANQEKEKQ 121

Query: 121 RGEELNKLRKA-SQAQCWWELPIEEMEMHQLEQLKASLDELKKNVTQQ 163
           +   L+ L+++  Q   W+E  +++++M++  QL ++L ++KK + ++
Sbjct: 122 KRMVLDLLKESREQVGNWYEKDVKDLDMNETNQLISALQDVKKKLVRE 169

[Close]
BLAST of Cucsa.298560 vs. TAIR10
Match: AT1G01530.1 (AT1G01530.1 AGAMOUS-like 28)

HSP 1 Score: 140.6 bits (353), Expect = 1.2e-33
Identity = 89/235 (37.87%), Postives = 125/235 (53.19%), Query Frame = 1 

Query: 2   RKSRGRQKVEMVKMPNESNLQVTFSKRRSGLFKKASELCTLCGAEIAIIVFSPGKKVFSF 61
           RK+ GR+K+E+VKM NESNLQVTFSKRRSGLFKK SELCTLC AEIAIIVFSP  K +SF
Sbjct: 3   RKNLGRRKIELVKMTNESNLQVTFSKRRSGLFKKGSELCTLCDAEIAIIVFSPSGKAYSF 62

Query: 62  GHPCVEALIERFVTRNPPPSSGTLQLIEAHRNANVRELNAQLTQVLNQLEMERKRGEEL- 121
           GHP V  L++  + R            E+     ++ LN  LT+V+ + E E++  + + 
Sbjct: 63  GHPNVNKLLDHSLGR--VIRHNNTNFAESRTKLRIQMLNESLTEVMAEKEKEQETKQSIV 122

Query: 122 NKLRKASQAQCWWELPIEEMEMHQLEQLKASLDELKKNVTQQADRI-------LIQTSSN 181
              R+   A+ WW     E+ + Q   +K  L+ LKK V ++  ++        + +SSN
Sbjct: 123 QNERENKDAEKWWRNSPTELNLAQSTSMKCDLEALKKEVDEKVAQLHHRNLNFYVGSSSN 182

Query: 182 ANPPTQLIFPTQIPT------QTSTTTNGPNQQPGLFVVDPKNIISHLPFNYGSY 223
              P   +    I T      Q   +T+ P    G       N+++  P  Y SY
Sbjct: 183 VAAPA-AVSGGNISTNHGFFDQNGNSTSAPTLPFGF------NVMNRTPAGYNSY 228

[Close]
BLAST of Cucsa.298560 vs. TAIR10
Match: AT1G65360.1 (AT1G65360.1 AGAMOUS-like 23)

HSP 1 Score: 136.3 bits (342), Expect = 2.3e-32
Identity = 77/174 (44.25%), Postives = 110/174 (63.22%), Query Frame = 1 

Query: 1   MRKSRGRQKVEMVKMPNESNLQVTFSKRRSGLFKKASELCTLCGAEIAIIVFSPGKKVFS 60
           ++K+ GR+KVE+VKM  ESNLQVTFSKR++GLFKKASE CTLC A+IA+IVFSP  KVFS
Sbjct: 2   VKKTLGRRKVEIVKMTKESNLQVTFSKRKAGLFKKASEFCTLCDAKIAMIVFSPAGKVFS 61

Query: 61  FGHPCVEALIERFVTRNPPPSSGTLQLIEAHRNANVRELNAQLTQVLNQLEMERK-RGEE 120
           FGHP V+ L++ F  R          L E++   +V+ LN   T+V  ++E E+K +   
Sbjct: 62  FGHPNVDVLLDHF--RGCVVGHNNTNLDESYTKLHVQMLNKSYTEVKAEVEKEQKNKQSR 121

Query: 121 LNKLRKASQAQCWWELPIEEMEMHQLEQLKASLDELKKNVTQQADRILIQTSSN 174
               R+   A+ WW     E+ + Q   +   L +LKK V ++A +++ QT+ N
Sbjct: 122 AQNERENENAEEWWSKSPLELNLSQSTCMIRVLKDLKKIVDEKAIQLIHQTNPN 173

[Close]
BLAST of Cucsa.298560 vs. NCBI nr
Match: gi|449465111|ref|XP_004150272.1| (PREDICTED: agamous-like MADS-box protein AGL62 [Cucumis sativus])

HSP 1 Score: 452.2 bits (1162), Expect = 5.3e-124
Identity = 225/225 (100.00%), Postives = 225/225 (100.00%), Query Frame = 1 

Query: 1   MRKSRGRQKVEMVKMPNESNLQVTFSKRRSGLFKKASELCTLCGAEIAIIVFSPGKKVFS 60
           MRKSRGRQKVEMVKMPNESNLQVTFSKRRSGLFKKASELCTLCGAEIAIIVFSPGKKVFS
Sbjct: 1   MRKSRGRQKVEMVKMPNESNLQVTFSKRRSGLFKKASELCTLCGAEIAIIVFSPGKKVFS 60

Query: 61  FGHPCVEALIERFVTRNPPPSSGTLQLIEAHRNANVRELNAQLTQVLNQLEMERKRGEEL 120
           FGHPCVEALIERFVTRNPPPSSGTLQLIEAHRNANVRELNAQLTQVLNQLEMERKRGEEL
Sbjct: 61  FGHPCVEALIERFVTRNPPPSSGTLQLIEAHRNANVRELNAQLTQVLNQLEMERKRGEEL 120

Query: 121 NKLRKASQAQCWWELPIEEMEMHQLEQLKASLDELKKNVTQQADRILIQTSSNANPPTQL 180
           NKLRKASQAQCWWELPIEEMEMHQLEQLKASLDELKKNVTQQADRILIQTSSNANPPTQL
Sbjct: 121 NKLRKASQAQCWWELPIEEMEMHQLEQLKASLDELKKNVTQQADRILIQTSSNANPPTQL 180

Query: 181 IFPTQIPTQTSTTTNGPNQQPGLFVVDPKNIISHLPFNYGSYGSR 226
           IFPTQIPTQTSTTTNGPNQQPGLFVVDPKNIISHLPFNYGSYGSR
Sbjct: 181 IFPTQIPTQTSTTTNGPNQQPGLFVVDPKNIISHLPFNYGSYGSR 225

[Close]
BLAST of Cucsa.298560 vs. NCBI nr
Match: gi|659108868|ref|XP_008454428.1| (PREDICTED: agamous-like MADS-box protein AGL62 [Cucumis melo])

HSP 1 Score: 441.4 bits (1134), Expect = 9.3e-121
Identity = 222/225 (98.67%), Postives = 222/225 (98.67%), Query Frame = 1 

Query: 1   MRKSRGRQKVEMVKMPNESNLQVTFSKRRSGLFKKASELCTLCGAEIAIIVFSPGKKVFS 60
           MRKSRGRQKVEMVKMPNESNLQVTFSKRRSGLFKKASELCTLCGAEIAIIVFSPGKKVFS
Sbjct: 1   MRKSRGRQKVEMVKMPNESNLQVTFSKRRSGLFKKASELCTLCGAEIAIIVFSPGKKVFS 60

Query: 61  FGHPCVEALIERFVTRNPPPSSGTLQLIEAHRNANVRELNAQLTQVLNQLEMERKRGEEL 120
           FGHPCVEALIERFVTRNPPPSSGTLQLIEAHRNANVRELNAQLTQVLNQLEMERKRGEEL
Sbjct: 61  FGHPCVEALIERFVTRNPPPSSGTLQLIEAHRNANVRELNAQLTQVLNQLEMERKRGEEL 120

Query: 121 NKLRKASQAQCWWELPIEEMEMHQLEQLKASLDELKKNVTQQADRILIQTSSNANPPTQL 180
           NKLRKASQAQCWWELPIEEMEMHQLEQLKASLDELKKNVTQQADRILIQTSSNANPPTQL
Sbjct: 121 NKLRKASQAQCWWELPIEEMEMHQLEQLKASLDELKKNVTQQADRILIQTSSNANPPTQL 180

Query: 181 IFPTQIPTQTSTTTNGPNQQPGLFVVDPKNIISHLPFNYGSYGSR 226
           IFPTQIP  T TTTNGPNQQPGLFVVDPKNIISHLPFNYGSYGSR
Sbjct: 181 IFPTQIP--TPTTTNGPNQQPGLFVVDPKNIISHLPFNYGSYGSR 223

[Close]
BLAST of Cucsa.298560 vs. NCBI nr
Match: gi|641830418|gb|KDO49506.1| (hypothetical protein CISIN_1g039654mg [Citrus sinensis])

HSP 1 Score: 295.8 bits (756), Expect = 6.3e-77
Identity = 152/225 (67.56%), Postives = 182/225 (80.89%), Query Frame = 1 

Query: 2   RKSRGRQKVEMVKMPNESNLQVTFSKRRSGLFKKASELCTLCGAEIAIIVFSPGKKVFSF 61
           +KS+GRQKVEMVKMPNESNLQVTFSKRR+GLFKKASELCTLCGA+IAIIVFSPGKKVFSF
Sbjct: 7   KKSKGRQKVEMVKMPNESNLQVTFSKRRTGLFKKASELCTLCGADIAIIVFSPGKKVFSF 66

Query: 62  GHPCVEALIERFVTRNPPPSSGTLQLIEAHRNANVRELNAQLTQVLNQLEMERKRGEELN 121
           GHPCVE +++R++TRNPP  SGT+QLIEAHRNA+VRELN QLTQVLNQLE+E+KRGEELN
Sbjct: 67  GHPCVETIVDRYLTRNPPQISGTMQLIEAHRNASVRELNMQLTQVLNQLEIEKKRGEELN 126

Query: 122 KLRKASQAQCWWELPIEEMEMHQLEQLKASLDELKKNVTQQADRILIQTSSNANPPTQLI 181
           ++RKASQAQCWWE PIEE+ + QLEQLK SL+ELKKNV +QA+++LIQ+S   NPP    
Sbjct: 127 QMRKASQAQCWWEAPIEELNLPQLEQLKMSLEELKKNVGKQAEKMLIQSS---NPP---- 186

Query: 182 FPTQIPTQTSTTTNG------PNQQPGLFVVDPKNIISHLPFNYG 221
              Q    +S+   G      PN    +F  +P N++ H  +N G
Sbjct: 187 ---QFFAGSSSNAGGMNLPFDPNNNAAVF--NPNNMMPHPGYNPG 219

[Close]
BLAST of Cucsa.298560 vs. NCBI nr
Match: gi|568867465|ref|XP_006487058.1| (PREDICTED: agamous-like MADS-box protein AGL62 [Citrus sinensis])

HSP 1 Score: 294.7 bits (753), Expect = 1.4e-76
Identity = 152/225 (67.56%), Postives = 180/225 (80.00%), Query Frame = 1 

Query: 2   RKSRGRQKVEMVKMPNESNLQVTFSKRRSGLFKKASELCTLCGAEIAIIVFSPGKKVFSF 61
           +KS+GRQKVEMVKMPNESNLQVTFSKRR+GLFKKASELCTLCGA+IAIIVFSPGKKVFSF
Sbjct: 4   KKSKGRQKVEMVKMPNESNLQVTFSKRRTGLFKKASELCTLCGADIAIIVFSPGKKVFSF 63

Query: 62  GHPCVEALIERFVTRNPPPSSGTLQLIEAHRNANVRELNAQLTQVLNQLEMERKRGEELN 121
           GHPCVE +++R++TRNPP  SGT+QLIEAHRNA VRELN QLTQVLNQLE+E+KRGEELN
Sbjct: 64  GHPCVETIVDRYLTRNPPQISGTMQLIEAHRNAGVRELNMQLTQVLNQLEIEKKRGEELN 123

Query: 122 KLRKASQAQCWWELPIEEMEMHQLEQLKASLDELKKNVTQQADRILIQTSSNANPPTQLI 181
           ++RKASQAQCWWE PIEE+ + QLEQLK SL+ELKKNV +QA+++LIQ S   NPP    
Sbjct: 124 QMRKASQAQCWWEAPIEELNLPQLEQLKMSLEELKKNVGKQAEKMLIQCS---NPP---- 183

Query: 182 FPTQIPTQTSTTTNG------PNQQPGLFVVDPKNIISHLPFNYG 221
              Q    +S+   G      PN    +F  +P N++ H  +N G
Sbjct: 184 ---QFFAGSSSNAGGMNLPFDPNNNAAVF--NPNNMMPHPGYNPG 216

[Close]
BLAST of Cucsa.298560 vs. NCBI nr
Match: gi|470111648|ref|XP_004292057.1| (PREDICTED: agamous-like MADS-box protein AGL62 [Fragaria vesca subsp. vesca])

HSP 1 Score: 288.9 bits (738), Expect = 7.7e-75
Identity = 142/178 (79.78%), Postives = 161/178 (90.45%), Query Frame = 1 

Query: 1   MRKSRGRQKVEMVKMPNESNLQVTFSKRRSGLFKKASELCTLCGAEIAIIVFSPGKKVFS 60
           +RKS+GRQKVEMVKM N+SNLQVTFSKRRSGLFKKASELCTLCGAEIAIIVFSPG+KVFS
Sbjct: 2   VRKSKGRQKVEMVKMANDSNLQVTFSKRRSGLFKKASELCTLCGAEIAIIVFSPGRKVFS 61

Query: 61  FGHPCVEALIERFVTRNPP--PSSGTLQLIEAHRNANVRELNAQLTQVLNQLEMERKRGE 120
           FGHPCVE++IERF+TRNPP   SSGT+QLIEAHRNANVRELN +LTQV N LE+ERKRGE
Sbjct: 62  FGHPCVESVIERFLTRNPPHHQSSGTMQLIEAHRNANVRELNTELTQVTNDLEVERKRGE 121

Query: 121 ELNKLRKASQAQCWWELPIEEMEMHQLEQLKASLDELKKNVTQQADRILIQTSSNANP 177
           E+N++RKASQ  CWWE PIEEME  Q +QL+ SLDELKK VT+Q DR+LIQ++SN NP
Sbjct: 122 EINRVRKASQGHCWWESPIEEMEPSQCQQLRGSLDELKKAVTKQIDRLLIQSTSNPNP 179

The following BLAST results are available for this feature:
BLAST of Cucsa.298560 vs. Swiss-Prot
Match NameE-valueIdentityDescription
AGL62_ARATH1.9e-5261.90Agamous-like MADS-box protein AGL62 OS=Arabidopsis thaliana GN=AGL62 PE=1 SV=1[more]
AGL61_ARATH3.3e-4154.66Agamous-like MADS-box protein AGL61 OS=Arabidopsis thaliana GN=AGL61 PE=1 SV=1[more]
AGL28_ARATH2.1e-3237.87Agamous-like MADS-box protein AGL28 OS=Arabidopsis thaliana GN=AGL28 PE=2 SV=1[more]
AGL23_ARATH4.0e-3144.25Agamous-like MADS-box protein AGL23 OS=Arabidopsis thaliana GN=AGL23 PE=2 SV=1[more]
AGL29_ARATH1.9e-2036.42Agamous-like MADS-box protein AGL29 OS=Arabidopsis thaliana GN=AGL29 PE=2 SV=1[more]
BLAST of Cucsa.298560 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KWA9_CUCSA3.7e-124100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_4G000530 PE=4 SV=1[more]
A0A067EEZ4_CITSI4.4e-7767.56Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g039654mg PE=4 SV=1[more]
V4SG26_9ROSI3.5e-7479.21Uncharacterized protein OS=Citrus clementina GN=CICLE_v10030142mg PE=4 SV=1[more]
M5VUL0_PRUPE2.5e-7276.67Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa026127mg PE=4 SV=1[more]
B9S7W9_RICCO8.9e-7072.97Mads box protein, putative OS=Ricinus communis GN=RCOM_1382330 PE=4 SV=1[more]
BLAST of Cucsa.298560 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G60440.11.0e-5361.90 AGAMOUS-like 62[more]
AT2G24840.11.8e-4254.66 AGAMOUS-like 61[more]
AT4G36590.11.1e-3748.81 MADS-box transcription factor family protein[more]
AT1G01530.11.2e-3337.87 AGAMOUS-like 28[more]
AT1G65360.12.3e-3244.25 AGAMOUS-like 23[more]
BLAST of Cucsa.298560 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449465111|ref|XP_004150272.1|5.3e-124100.00PREDICTED: agamous-like MADS-box protein AGL62 [Cucumis sativus][more]
gi|659108868|ref|XP_008454428.1|9.3e-12198.67PREDICTED: agamous-like MADS-box protein AGL62 [Cucumis melo][more]
gi|641830418|gb|KDO49506.1|6.3e-7767.56hypothetical protein CISIN_1g039654mg [Citrus sinensis][more]
gi|568867465|ref|XP_006487058.1|1.4e-7667.56PREDICTED: agamous-like MADS-box protein AGL62 [Citrus sinensis][more]
gi|470111648|ref|XP_004292057.1|7.7e-7579.78PREDICTED: agamous-like MADS-box protein AGL62 [Fragaria vesca subsp. vesca][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR002100TF_MADSbox
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO:0046983protein dimerization activity
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
biological_process GO:0008150 biological_process
cellular_component GO:0005634 nucleus
cellular_component GO:0005575 cellular_component
molecular_function GO:0003677 DNA binding
molecular_function GO:0046983 protein dimerization activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsa.298560.1Cucsa.298560.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002100Transcription factor, MADS-boxPRINTSPR00404MADSDOMAINcoord: 42..63
score: 1.4E-18coord: 7..27
score: 1.4E-18coord: 27..42
score: 1.4
IPR002100Transcription factor, MADS-boxPFAMPF00319SRF-TFcoord: 16..61
score: 3.7
IPR002100Transcription factor, MADS-boxSMARTSM00432madsneu2coord: 5..64
score: 1.7
IPR002100Transcription factor, MADS-boxPROFILEPS50066MADS_BOX_2coord: 5..65
score: 23
IPR002100Transcription factor, MADS-boxunknownSSF55455SRF-likecoord: 6..78
score: 1.44
NoneNo IPR availableunknownCoilCoilcoord: 93..120
score: -coord: 138..165
scor
NoneNo IPR availablePANTHERPTHR11945MADS BOX PROTEINcoord: 6..183
score: 9.9E
NoneNo IPR availablePANTHERPTHR11945:SF185AGAMOUS-LIKE MADS-BOX PROTEIN AGL62coord: 6..183
score: 9.9E