Bhi11G000902 (gene) Wax gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Bhi11G000902
Type	gene
Organism	Benincasa hispida (Wax gourd)
Description	agamous-like MADS-box protein AGL62
Location	chr11 : 32286937 .. 32287188 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAATGAATCAATTAGAGCAACTCAAAGCATCCTTGGATGAGTTAAAGAAGAATGTCACACAACAAGCTGATCTCATTTTGATTCAGACTTCTAATGGCAATCTGACGCCGCAGTTCTTCCCAACTCCTACACCGACACCGATAAACTCTAACCAACAAGCTGGCCTTTTCGTCGTCGATCCGAAGAACATCATCTCCCATCTTCCCTACAATACCTATGGTTCCTATAGACCATGTGGTTTCTTTTGA

mRNA sequence

ATGGAAATGAATCAATTAGAGCAACTCAAAGCATCCTTGGATGAGTTAAAGAAGAATGTCACACAACAAGCTGATCTCATTTTGATTCAGACTTCTAATGGCAATCTGACGCCGCAGTTCTTCCCAACTCCTACACCGACACCGATAAACTCTAACCAACAAGCTGGCCTTTTCGTCGTCGATCCGAAGAACATCATCTCCCATCTTCCCTACAATACCTATGGTTCCTATAGACCATGTGGTTTCTTTTGA

Coding sequence (CDS)

ATGGAAATGAATCAATTAGAGCAACTCAAAGCATCCTTGGATGAGTTAAAGAAGAATGTCACACAACAAGCTGATCTCATTTTGATTCAGACTTCTAATGGCAATCTGACGCCGCAGTTCTTCCCAACTCCTACACCGACACCGATAAACTCTAACCAACAAGCTGGCCTTTTCGTCGTCGATCCGAAGAACATCATCTCCCATCTTCCCTACAATACCTATGGTTCCTATAGACCATGTGGTTTCTTTTGA

Protein sequence

MEMNQLEQLKASLDELKKNVTQQADLILIQTSNGNLTPQFFPTPTPTPINSNQQAGLFVVDPKNIISHLPYNTYGSYRPCGFF

Homology

[Close]

BLAST of Bhi11G000902 vs. TrEMBL
Match: tr|A0A1S3BYP6|A0A1S3BYP6_CUCME (agamous-like MADS-box protein AGL62 OS=Cucumis melo OX=3656 GN=LOC103494837 PE=4 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 2.4e-18
Identity = 62/88 (70.45%), Postives = 65/88 (73.86%), Query Frame = 0


Query: 1   MEMNQLEQLKASLDELKKNVTQQADLILIQT-SNGNLTPQ-FFPTXXXXXINS---NQQA 60
           MEM+QLEQLKASLDELKKNVTQQAD ILIQT SN N   Q  FPT       +   NQQ 
Sbjct: 140 MEMHQLEQLKASLDELKKNVTQQADRILIQTSSNANPPTQLIFPTQIPTPTTTNGPNQQP 199

Query: 61  GLFVVDPKNIISHLPYNTYGSYRPCGFF 84
           GLFVVDPKNIISHLP+N YGSY   GFF
Sbjct: 200 GLFVVDPKNIISHLPFN-YGSYGSRGFF 226

[Close]

BLAST of Bhi11G000902 vs. TrEMBL
Match: tr|A0A0A0KWA9|A0A0A0KWA9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G000530 PE=4 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 2.4e-18
Identity = 62/90 (68.89%), Postives = 65/90 (72.22%), Query Frame = 0


Query: 1   MEMNQLEQLKASLDELKKNVTQQADLILIQT-SNGN-----LTPQFFPTXXXXXINS-NQ 60
           MEM+QLEQLKASLDELKKNVTQQAD ILIQT SN N     + P   PT      N  NQ
Sbjct: 140 MEMHQLEQLKASLDELKKNVTQQADRILIQTSSNANPPTQLIFPTQIPTQTSTTTNGPNQ 199

Query: 61  QAGLFVVDPKNIISHLPYNTYGSYRPCGFF 84
           Q GLFVVDPKNIISHLP+N YGSY   GFF
Sbjct: 200 QPGLFVVDPKNIISHLPFN-YGSYGSRGFF 228

[Close]

BLAST of Bhi11G000902 vs. TrEMBL
Match: tr|A0A1Q3BV83|A0A1Q3BV83_CEPFO (SRF-TF domain-containing protein (Fragment) OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_15288 PE=4 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 3.4e-04
Identity = 36/87 (41.38%), Postives = 49/87 (56.32%), Query Frame = 0


Query: 1   MEMNQLEQLKASLDELKKNVTQQADLILIQTSNGNLTPQFFPTXXXXXINSNQQAGLFVV 60
           + M QL QLKASLD+LKKNV +Q D +LIQ+SN    PQFFP         +  +G    
Sbjct: 140 LTMPQLVQLKASLDDLKKNVAKQVDRLLIQSSN---PPQFFP--------GSSSSGNPPF 199

Query: 61  DPKNII----SHLPYNTYGSYRPCGFF 84
           +PKN +    + +P+  +  Y   GFF
Sbjct: 200 EPKNNVGFNPNMVPHGYHPGYGSRGFF 215

[Close]

BLAST of Bhi11G000902 vs. NCBI nr
Match: XP_022149295.1 (agamous-like MADS-box protein AGL62 [Momordica charantia])

HSP 1 Score: 114.8 bits (286), Expect = 1.4e-22
Identity = 61/83 (73.49%), Postives = 66/83 (79.52%), Query Frame = 0


Query: 1   MEMNQLEQLKASLDELKKNVTQQADLILIQTSNGNLTPQFFPTXXXXXINSNQQAGLFVV 60
           MEMNQLEQLK SL+ELKKNVTQ AD IL+QTSNGN  PQ+FPT      N NQQ G+FVV
Sbjct: 140 MEMNQLEQLKTSLEELKKNVTQHADRILVQTSNGNPPPQYFPT--PSPANPNQQGGVFVV 199

Query: 61  DPKNIISHLPYNTYGSYRPCGFF 84
           DPKN+ISHLPYN YGSY   GFF
Sbjct: 200 DPKNMISHLPYN-YGSYGSRGFF 219

[Close]

BLAST of Bhi11G000902 vs. NCBI nr
Match: XP_022942821.1 (agamous-like MADS-box protein AGL62 [Cucurbita moschata] >XP_023516147.1 agamous-like MADS-box protein AGL62 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 112.1 bits (279), Expect = 9.3e-22
Identity = 61/83 (73.49%), Postives = 66/83 (79.52%), Query Frame = 0


Query: 1   MEMNQLEQLKASLDELKKNVTQQADLILIQTSNGNLTPQFFPTXXXXXINSNQQAGLFVV 60
           ME++QLEQLK SLDELKKNVTQQAD ILIQTSNGN  PQFFPT      N NQQ G++VV
Sbjct: 140 MELHQLEQLKLSLDELKKNVTQQADRILIQTSNGNPPPQFFPT--PTPANPNQQGGVYVV 199

Query: 61  DPKNIISHLPYNTYGSYRPCGFF 84
           D KN+ISHLPYN YGSY   GFF
Sbjct: 200 DQKNMISHLPYN-YGSYGSRGFF 219

[Close]

BLAST of Bhi11G000902 vs. NCBI nr
Match: XP_022975753.1 (agamous-like MADS-box protein AGL62 [Cucurbita maxima])

HSP 1 Score: 108.6 bits (270), Expect = 1.0e-20
Identity = 60/83 (72.29%), Postives = 64/83 (77.11%), Query Frame = 0


Query: 1   MEMNQLEQLKASLDELKKNVTQQADLILIQTSNGNLTPQFFPTXXXXXINSNQQAGLFVV 60
           ME+ QLEQLK SLDELKKNV QQAD ILIQTSNGN  PQFFPT      N NQQ G++VV
Sbjct: 140 MELYQLEQLKLSLDELKKNVMQQADRILIQTSNGNPPPQFFPT--PTPANPNQQGGVYVV 199

Query: 61  DPKNIISHLPYNTYGSYRPCGFF 84
           D KN+ISHLPYN YGSY   GFF
Sbjct: 200 DQKNMISHLPYN-YGSYGSRGFF 219

[Close]

BLAST of Bhi11G000902 vs. NCBI nr
Match: XP_004150272.1 (PREDICTED: agamous-like MADS-box protein AGL62 [Cucumis sativus] >KGN52732.1 hypothetical protein Csa_4G000530 [Cucumis sativus])

HSP 1 Score: 100.1 bits (248), Expect = 3.6e-18
Identity = 62/90 (68.89%), Postives = 65/90 (72.22%), Query Frame = 0


Query: 1   MEMNQLEQLKASLDELKKNVTQQADLILIQT-SNGN-----LTPQFFPTXXXXXINS-NQ 60
           MEM+QLEQLKASLDELKKNVTQQAD ILIQT SN N     + P   PT      N  NQ
Sbjct: 140 MEMHQLEQLKASLDELKKNVTQQADRILIQTSSNANPPTQLIFPTQIPTQTSTTTNGPNQ 199

Query: 61  QAGLFVVDPKNIISHLPYNTYGSYRPCGFF 84
           Q GLFVVDPKNIISHLP+N YGSY   GFF
Sbjct: 200 QPGLFVVDPKNIISHLPFN-YGSYGSRGFF 228

[Close]

BLAST of Bhi11G000902 vs. NCBI nr
Match: XP_008454428.1 (PREDICTED: agamous-like MADS-box protein AGL62 [Cucumis melo])

HSP 1 Score: 100.1 bits (248), Expect = 3.6e-18
Identity = 62/88 (70.45%), Postives = 65/88 (73.86%), Query Frame = 0


Query: 1   MEMNQLEQLKASLDELKKNVTQQADLILIQT-SNGNLTPQ-FFPTXXXXXINS---NQQA 60
           MEM+QLEQLKASLDELKKNVTQQAD ILIQT SN N   Q  FPT       +   NQQ 
Sbjct: 140 MEMHQLEQLKASLDELKKNVTQQADRILIQTSSNANPPTQLIFPTQIPTPTTTNGPNQQP 199

Query: 61  GLFVVDPKNIISHLPYNTYGSYRPCGFF 84
           GLFVVDPKNIISHLP+N YGSY   GFF
Sbjct: 200 GLFVVDPKNIISHLPFN-YGSYGSRGFF 226

The following BLAST results are available for this feature:

BLAST of Bhi11G000902 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Bhi11G000902 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Bhi11G000902 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3BYP6\|A0A1S3BYP6_CUCME	2.4e-18	70.45	agamous-like MADS-box protein AGL62 OS=Cucumis melo OX=3656 GN=LOC103494837 PE=4...	[more]
tr\|A0A0A0KWA9\|A0A0A0KWA9_CUCSA	2.4e-18	68.89	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G000530 PE=4 SV=1	[more]
tr\|A0A1Q3BV83\|A0A1Q3BV83_CEPFO	3.4e-04	41.38	SRF-TF domain-containing protein (Fragment) OS=Cephalotus follicularis OX=3775 G...	[more]

BLAST of Bhi11G000902 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022149295.1	1.4e-22	73.49	agamous-like MADS-box protein AGL62 [Momordica charantia]	[more]
XP_022942821.1	9.3e-22	73.49	agamous-like MADS-box protein AGL62 [Cucurbita moschata] >XP_023516147.1 agamous...	[more]
XP_022975753.1	1.0e-20	72.29	agamous-like MADS-box protein AGL62 [Cucurbita maxima]	[more]
XP_004150272.1	3.6e-18	68.89	PREDICTED: agamous-like MADS-box protein AGL62 [Cucumis sativus] >KGN52732.1 hyp...	[more]
XP_008454428.1	3.6e-18	70.45	PREDICTED: agamous-like MADS-box protein AGL62 [Cucumis melo]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0007275	multicellular organism development
cellular_component	GO:0005634	nucleus
molecular_function	GO:0000977	RNA polymerase II regulatory region sequence-specific DNA binding
molecular_function	GO:0008134	transcription factor binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Bhi11M000902	Bhi11M000902	mRNA

InterPro

Analysis Name: InterPro Annotations of wax gourd
Date Performed: 2019-11-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 3..26

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Bhi11G000902	Cla006464	Watermelon (97103) v1	wgowmB007

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Bhi11G000902	Cucumber (Gy14) v1	cgywgoB443
Bhi11G000902	Cucumber (Gy14) v1	cgywgoB597
Bhi11G000902	Cucumber (Gy14) v2	cgybwgoB342
Bhi11G000902	Cucumber (Gy14) v2	cgybwgoB619
Bhi11G000902	Cucurbita maxima (Rimu)	cmawgoB0410
Bhi11G000902	Cucurbita maxima (Rimu)	cmawgoB0634
Bhi11G000902	Cucurbita maxima (Rimu)	cmawgoB0814
Bhi11G000902	Cucurbita moschata (Rifu)	cmowgoB0405
Bhi11G000902	Cucurbita moschata (Rifu)	cmowgoB0635
Bhi11G000902	Cucurbita moschata (Rifu)	cmowgoB0810
Bhi11G000902	Cucurbita pepo (Zucchini)	cpewgoB0266
Bhi11G000902	Cucurbita pepo (Zucchini)	cpewgoB0311
Bhi11G000902	Cucurbita pepo (Zucchini)	cpewgoB0477
Bhi11G000902	Wild cucumber (PI 183967)	cpiwgoB358
Bhi11G000902	Wild cucumber (PI 183967)	cpiwgoB659
Bhi11G000902	Cucumber (Chinese Long) v3	cucwgoB674
Bhi11G000902	Cucumber (Chinese Long) v2	cuwgoB356
Bhi11G000902	Cucumber (Chinese Long) v2	cuwgoB651
Bhi11G000902	Bottle gourd (USVL1VR-Ls)	lsiwgoB292
Bhi11G000902	Bottle gourd (USVL1VR-Ls)	lsiwgoB307
Bhi11G000902	Melon (DHL92) v3.6.1	medwgoB200
Bhi11G000902	Melon (DHL92) v3.6.1	medwgoB569
Bhi11G000902	Melon (DHL92) v3.5.1	mewgoB198
Bhi11G000902	Melon (DHL92) v3.5.1	mewgoB564
Bhi11G000902	Watermelon (Charleston Gray)	wcgwgoB078
Bhi11G000902	Watermelon (Charleston Gray)	wcgwgoB259
Bhi11G000902	Watermelon (97103) v2	wgowmbB001
Bhi11G000902	Watermelon (97103) v2	wgowmbB033
Bhi11G000902	Silver-seed gourd	carwgoB0381
Bhi11G000902	Silver-seed gourd	carwgoB0456