Cla005105 (gene) Watermelon (97103) v1

Overview
NameCla005105
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionUnknown Protein (AHRD V1)
LocationChr3 : 3263306 .. 3263548 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGAAGACTAACACTTGGTGCAATCCTCATGTTGGTGCTGATCAGCTCGGCCGTACTAATTGAAGGGACGACTCGTAGGAGTCTCCAACGACTGATTGATAGACACGAGCAAACACTACGAGGGAATGAGAATGAAAAGGCCAAAAATAGGCATCCTAGTGATAGTGGTGAATACAATCACCATGGGTGTCCTAGAAGAGATGTGGATTGTTGGAGTACCACAAAACAAACTGGGGATTAA

mRNA sequence

ATGAGAAGACTAACACTTGGTGCAATCCTCATGTTGGTGCTGATCAGCTCGGCCGTACTAATTGAAGGGACGACTCGTAGGAGTCTCCAACGACTGATTGATAGACACGAGCAAACACTACGAGGGAATGAGAATGAAAAGGCCAAAAATAGGCATCCTAGTGATAGTGGTGAATACAATCACCATGGGTGTCCTAGAAGAGATGTGGATTGTTGGAGTACCACAAAACAAACTGGGGATTAA

Coding sequence (CDS)

ATGAGAAGACTAACACTTGGTGCAATCCTCATGTTGGTGCTGATCAGCTCGGCCGTACTAATTGAAGGGACGACTCGTAGGAGTCTCCAACGACTGATTGATAGACACGAGCAAACACTACGAGGGAATGAGAATGAAAAGGCCAAAAATAGGCATCCTAGTGATAGTGGTGAATACAATCACCATGGGTGTCCTAGAAGAGATGTGGATTGTTGGAGTACCACAAAACAAACTGGGGATTAA

Protein sequence

MRRLTLGAILMLVLISSAVLIEGTTRRSLQRLIDRHEQTLRGNENEKAKNRHPSDSGEYNHHGCPRRDVDCWSTTKQTGD
Homology
[Close]
BLAST of Cla005105 vs. TrEMBL
Match: A0A0A0LV16_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G119910 PE=4 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 3.8e-23
Identity = 59/81 (72.84%), Postives = 66/81 (81.48%), Query Frame = 1 

Query: 1  MRRLTLGAILMLVLISSAVLIEGTTRRSLQRLIDRHEQTLRG-NENEKAKNRHPSDSGEY 60
          MRRLTL AILMLVLI+S +LIEGTT RS +RLID ++Q  R  NENEKAK R P+DSGEY
Sbjct: 1  MRRLTLAAILMLVLITSVMLIEGTTLRSPRRLIDINKQREREINENEKAKTRRPNDSGEY 60

Query: 61 NHHGCPRRDVDCWSTTKQTGD 81
          NHHGC RRDVDCWS  KQ+ D
Sbjct: 61 NHHGCLRRDVDCWSNAKQSTD 81

[Close]
BLAST of Cla005105 vs. NCBI nr
Match: gi|700209728|gb|KGN64824.1| (hypothetical protein Csa_1G119910 [Cucumis sativus])

HSP 1 Score: 115.2 bits (287), Expect = 5.4e-23
Identity = 59/81 (72.84%), Postives = 66/81 (81.48%), Query Frame = 1 

Query: 1  MRRLTLGAILMLVLISSAVLIEGTTRRSLQRLIDRHEQTLRG-NENEKAKNRHPSDSGEY 60
          MRRLTL AILMLVLI+S +LIEGTT RS +RLID ++Q  R  NENEKAK R P+DSGEY
Sbjct: 1  MRRLTLAAILMLVLITSVMLIEGTTLRSPRRLIDINKQREREINENEKAKTRRPNDSGEY 60

Query: 61 NHHGCPRRDVDCWSTTKQTGD 81
          NHHGC RRDVDCWS  KQ+ D
Sbjct: 61 NHHGCLRRDVDCWSNAKQSTD 81

The following BLAST results are available for this feature:
BLAST of Cla005105 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LV16_CUCSA3.8e-2372.84Uncharacterized protein OS=Cucumis sativus GN=Csa_1G119910 PE=4 SV=1[more]
BLAST of Cla005105 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700209728|gb|KGN64824.1|5.4e-2372.84hypothetical protein Csa_1G119910 [Cucumis sativus][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla005105Cla005105.1mRNA


InterPro
Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableunknownCoilCoilcoord: 26..46
scor