Cp4.1LG20g07200 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG20g07200
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionUnknown protein
LocationCp4.1LG20 : 6312235 .. 6312477 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGAAGACTAACGCTTGGTGCATTTCTCCTGTTGGTGCTGATCAGCTCGACCATGCTAATTGAAAGTACAATGTATACGAGTCCTCGACGACTACTGGCCGACAGAAACGAGCAGAGGGTGATGGGGAATGACAATGAAATGACCAAAAATAGGCGCCCTAATGATAGTGGTGAGTACAATCACCATGGGTGTCCTAGAAGAGATGTGGATTGCTGGAGTAACAAAGAAATTAGGGGCTAA

mRNA sequence

ATGAGAAGACTAACGCTTGGTGCATTTCTCCTGTTGGTGCTGATCAGCTCGACCATGCTAATTGAAAGTACAATGTATACGAGTCCTCGACGACTACTGGCCGACAGAAACGAGCAGAGGGTGATGGGGAATGACAATGAAATGACCAAAAATAGGCGCCCTAATGATAGTGGTGAGTACAATCACCATGGGTGTCCTAGAAGAGATGTGGATTGCTGGAGTAACAAAGAAATTAGGGGCTAA

Coding sequence (CDS)

ATGAGAAGACTAACGCTTGGTGCATTTCTCCTGTTGGTGCTGATCAGCTCGACCATGCTAATTGAAAGTACAATGTATACGAGTCCTCGACGACTACTGGCCGACAGAAACGAGCAGAGGGTGATGGGGAATGACAATGAAATGACCAAAAATAGGCGCCCTAATGATAGTGGTGAGTACAATCACCATGGGTGTCCTAGAAGAGATGTGGATTGCTGGAGTAACAAAGAAATTAGGGGCTAA

Protein sequence

MRRLTLGAFLLLVLISSTMLIESTMYTSPRRLLADRNEQRVMGNDNEMTKNRRPNDSGEYNHHGCPRRDVDCWSNKEIRG
Homology
[Close]
BLAST of Cp4.1LG20g07200 vs. TrEMBL
Match: A0A0A0LV16_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G119910 PE=4 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 1.1e-17
Identity = 54/76 (71.05%), Postives = 59/76 (77.63%), Query Frame = 1 

Query: 1  MRRLTLGAFLLLVLISSTMLIESTMYTSPRRLLADRNEQRVMG-NDNEMTKNRRPNDSGE 60
          MRRLTL A L+LVLI+S MLIE T   SPRRL+ D N+QR    N+NE  K RRPNDSGE
Sbjct: 1  MRRLTLAAILMLVLITSVMLIEGTTLRSPRRLI-DINKQREREINENEKAKTRRPNDSGE 60

Query: 61 YNHHGCPRRDVDCWSN 76
          YNHHGC RRDVDCWSN
Sbjct: 61 YNHHGCLRRDVDCWSN 75

[Close]
BLAST of Cp4.1LG20g07200 vs. NCBI nr
Match: gi|700209728|gb|KGN64824.1| (hypothetical protein Csa_1G119910 [Cucumis sativus])

HSP 1 Score: 97.1 bits (240), Expect = 1.5e-17
Identity = 54/76 (71.05%), Postives = 59/76 (77.63%), Query Frame = 1 

Query: 1  MRRLTLGAFLLLVLISSTMLIESTMYTSPRRLLADRNEQRVMG-NDNEMTKNRRPNDSGE 60
          MRRLTL A L+LVLI+S MLIE T   SPRRL+ D N+QR    N+NE  K RRPNDSGE
Sbjct: 1  MRRLTLAAILMLVLITSVMLIEGTTLRSPRRLI-DINKQREREINENEKAKTRRPNDSGE 60

Query: 61 YNHHGCPRRDVDCWSN 76
          YNHHGC RRDVDCWSN
Sbjct: 61 YNHHGCLRRDVDCWSN 75

The following BLAST results are available for this feature:
BLAST of Cp4.1LG20g07200 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG20g07200 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LV16_CUCSA1.1e-1771.05Uncharacterized protein OS=Cucumis sativus GN=Csa_1G119910 PE=4 SV=1[more]
BLAST of Cp4.1LG20g07200 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG20g07200 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700209728|gb|KGN64824.1|1.5e-1771.05hypothetical protein Csa_1G119910 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG20g07200.1Cp4.1LG20g07200.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG20g07200Cla005105Watermelon (97103) v1cpewmB507
Cp4.1LG20g07200Csa1G119910Cucumber (Chinese Long) v2cpecuB516
Cp4.1LG20g07200ClCG03G002910Watermelon (Charleston Gray)cpewcgB467
Cp4.1LG20g07200CSPI01G13600Wild cucumber (PI 183967)cpecpiB518
Cp4.1LG20g07200Lsi03G000240Bottle gourd (USVL1VR-Ls)cpelsiB429
Cp4.1LG20g07200CsaV3_1G013840Cucumber (Chinese Long) v3cpecucB0635
Cp4.1LG20g07200Bhi08G000182Wax gourdcpewgoB0636
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG20g07200Cucurbita pepo (Zucchini)cpecpeB296
Cp4.1LG20g07200Cucurbita pepo (Zucchini)cpecpeB297
Cp4.1LG20g07200Cucurbita pepo (Zucchini)cpecpeB432
Cp4.1LG20g07200Cucurbita pepo (Zucchini)cpecpeB446
Cp4.1LG20g07200Cucurbita maxima (Rimu)cmacpeB236
Cp4.1LG20g07200Cucurbita maxima (Rimu)cmacpeB483
Cp4.1LG20g07200Cucurbita moschata (Rifu)cmocpeB203
Cp4.1LG20g07200Cucurbita moschata (Rifu)cmocpeB441
Cp4.1LG20g07200Melon (DHL92) v3.5.1cpemeB480
Cp4.1LG20g07200Cucumber (Gy14) v2cgybcpeB082
Cp4.1LG20g07200Melon (DHL92) v3.6.1cpemedB563
Cp4.1LG20g07200Silver-seed gourdcarcpeB0469
Cp4.1LG20g07200Silver-seed gourdcarcpeB0470
Cp4.1LG20g07200Silver-seed gourdcarcpeB0620
Cp4.1LG20g07200Silver-seed gourdcarcpeB1278