CsaV3_1G013840 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_1G013840
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr1 : 9139144 .. 9139851 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CACAATTCAACAACCTAACCCTCATTTCCACTAAATACTTCAATTACAAGTCCCAATAACAACAGAAAAGAAACTTCCAAAACTTAGCGTTTTCTTTCTCCTCTTTTGATTTTCATTCCAAAAATCTAATCAGCCCTTTTCTTCCCTCCTCTCCTCATTATAGTTAACAGAGGTTTGTGTGAAAAATGAGAAGACTAACACTTGCTGCAATCCTCATGTTGGTGTTGATCACCTCGGTCATGCTAATTGAAGGGACAACTCTTAGGAGTCCCCGACGACTGATTGATATAAACAAGCAGAGAGAGCGGGAGATCAACGAGAATGAGAAGGCAAAAACTAGGCGACCTAACGATAGTGGTGAATACAATCACCATGGATGTCTTAGAAGAGATGTGGATTGTTGGAGTAACGCAAAACAAAGTACGGACTAATGTAGATATACACAATCAAAGTTAGCCGGCTAAATGTTTTTGTGTATCTAAATAAATAACTAAGACTTCGGTTTGTAATCATTCGCCGGCTAGTTATAGTACTTTACATCTTTCCGTTCTGTTTTTGTAATATATGATGGAGTAAGAACTTCTTGTTTGATTAGTAAATGATAAATATTTGAGTTTTGTAAGATTATATGTTTGGTTATTTTTCTAACTTGTCTGTGAGACTAAAGTAAAATTTGTTTAAAGGAAATAAAAATATTCATAATTCCCA

mRNA sequence

ATGAGAAGACTAACACTTGCTGCAATCCTCATGTTGGTGTTGATCACCTCGGTCATGCTAATTGAAGGGACAACTCTTAGGAGTCCCCGACGACTGATTGATATAAACAAGCAGAGAGAGCGGGAGATCAACGAGAATGAGAAGGCAAAAACTAGGCGACCTAACGATAGTGGTGAATACAATCACCATGGATGTCTTAGAAGAGATGTGGATTGTTGGAGTAACGCAAAACAAAGTACGGACTAA

Coding sequence (CDS)

ATGAGAAGACTAACACTTGCTGCAATCCTCATGTTGGTGTTGATCACCTCGGTCATGCTAATTGAAGGGACAACTCTTAGGAGTCCCCGACGACTGATTGATATAAACAAGCAGAGAGAGCGGGAGATCAACGAGAATGAGAAGGCAAAAACTAGGCGACCTAACGATAGTGGTGAATACAATCACCATGGATGTCTTAGAAGAGATGTGGATTGTTGGAGTAACGCAAAACAAAGTACGGACTAA

Protein sequence

MRRLTLAAILMLVLITSVMLIEGTTLRSPRRLIDINKQREREINENEKAKTRRPNDSGEYNHHGCLRRDVDCWSNAKQSTD

Homology

[Close]

BLAST of CsaV3_1G013840 vs. NCBI nr
Match: KGN64824.1 (hypothetical protein Csa_1G119910 [Cucumis sativus])

HSP 1 Score: 155.6 bits (392), Expect = 7.2e-35
Identity = 81/81 (100.00%), Postives = 81/81 (100.00%), Query Frame = 0


Query: 1  MRRLTLAAILMLVLITSVMLIEGTTLRSPRRLIDINKQREREINENEKAKTRRPNDSGEY 60
          MRRLTLAAILMLVLITSVMLIEGTTLRSPRRLIDINKQREREINENEKAKTRRPNDSGEY
Sbjct: 1  MRRLTLAAILMLVLITSVMLIEGTTLRSPRRLIDINKQREREINENEKAKTRRPNDSGEY 60

Query: 61 NHHGCLRRDVDCWSNAKQSTD 82
          NHHGCLRRDVDCWSNAKQSTD
Sbjct: 61 NHHGCLRRDVDCWSNAKQSTD 81

[Close]

BLAST of CsaV3_1G013840 vs. TrEMBL
Match: tr|A0A0A0LV16|A0A0A0LV16_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G119910 PE=4 SV=1)

HSP 1 Score: 155.6 bits (392), Expect = 4.8e-35
Identity = 81/81 (100.00%), Postives = 81/81 (100.00%), Query Frame = 0


Query: 1  MRRLTLAAILMLVLITSVMLIEGTTLRSPRRLIDINKQREREINENEKAKTRRPNDSGEY 60
          MRRLTLAAILMLVLITSVMLIEGTTLRSPRRLIDINKQREREINENEKAKTRRPNDSGEY
Sbjct: 1  MRRLTLAAILMLVLITSVMLIEGTTLRSPRRLIDINKQREREINENEKAKTRRPNDSGEY 60

Query: 61 NHHGCLRRDVDCWSNAKQSTD 82
          NHHGCLRRDVDCWSNAKQSTD
Sbjct: 61 NHHGCLRRDVDCWSNAKQSTD 81

The following BLAST results are available for this feature:

BLAST of CsaV3_1G013840 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN64824.1	7.2e-35	100.00	hypothetical protein Csa_1G119910 [Cucumis sativus]	[more]

BLAST of CsaV3_1G013840 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsaV3_1G013840 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsaV3_1G013840 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LV16\|A0A0A0LV16_CUCSA	4.8e-35	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G119910 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_1G013840.1	CsaV3_1G013840.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 32..52
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 43..64

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsaV3_1G013840	CSPI01G13580	Wild cucumber (PI 183967)	cpicucB001
CsaV3_1G013840	CmaCh01G005020	Cucurbita maxima (Rimu)	cmacucB0518
CsaV3_1G013840	CmoCh01G005340	Cucurbita moschata (Rifu)	cmocucB0505
CsaV3_1G013840	Cp4.1LG02g12480	Cucurbita pepo (Zucchini)	cpecucB0657
CsaV3_1G013840	Cp4.1LG20g07200	Cucurbita pepo (Zucchini)	cpecucB0635
CsaV3_1G013840	Cla005105	Watermelon (97103) v1	cucwmB015
CsaV3_1G013840	ClCG03G002910	Watermelon (Charleston Gray)	cucwcgB040
CsaV3_1G013840	Lsi03G000240	Bottle gourd (USVL1VR-Ls)	cuclsiB048
CsaV3_1G013840	Cla97C03G053990	Watermelon (97103) v2	cucwmbB032

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_1G013840	Cucumber (Chinese Long) v3	cuccucB021
CsaV3_1G013840	Silver-seed gourd	carcucB0363
CsaV3_1G013840	Silver-seed gourd	carcucB0474
CsaV3_1G013840	Cucumber (Gy14) v2	cgybcucB002
CsaV3_1G013840	Cucurbita maxima (Rimu)	cmacucB0234
CsaV3_1G013840	Cucurbita moschata (Rifu)	cmocucB0221
CsaV3_1G013840	Bottle gourd (USVL1VR-Ls)	cuclsiB054
CsaV3_1G013840	Melon (DHL92) v3.5.1	cucmeB010
CsaV3_1G013840	Melon (DHL92) v3.6.1	cucmedB009
CsaV3_1G013840	Wax gourd	cucwgoB017
CsaV3_1G013840	Wax gourd	cucwgoB051