CSPI01G13580 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI01G13580
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionUnknown protein
LocationChr1 : 9085527 .. 9088473 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGATACCTTAAGAAAACCCAGAACATAGGATTACATTATCAAAAGTTTCCTGTTGTTCAAGAAAGTTACTATGATGTTGATTGGAACTTCATCTTGGATGACTCAAATGTTACAAGTGGCTATATTTTTAGTAGGAAAGGTTGTTGCTTGGAAATCCAAAAAACAAACTATTTTAGCCAAGTCAACGTTGGACTCAGAAATGATAGGACTAGCTACTGCTAGTAAAGAAGCAAGTTGGCTTCAAAGATCGATACTAACCATATAAATCAATTGCGATAATACTGCAGCTATCACAAAAGTTCAAAAAATTCTTATTATAATGGCAAGAGACAACAGATACGTAGTGAGCACAATACCGTTAGAGAGTTTCTCACTATTGGTGCAGTAATAGCGGATCACGTATGGACTGATGATGATAACTTGGCTAATCATTTGACCAAAGGTCTAGCTAGAGAGAGTTTTTCAAAACCTCAAAAAGAATGGGACTCAAGTCTAAAGAAAATTGAATCGCCTGTAAGGTAAACCCAACTTTAAAGATTTGAGATCCCAAGAAACAAGTTCAATGGGTAATAACTGACCACAAGTGATATGAAGAGAATTATGCTAAAACACCTAGGAGTTCCATTCTTATGATTAAGTGATTAGCATGATATATCCTAAAGTAAGTGAAAAGGCTAAACTTAGTTATTAATGAATTCTATACTTGATGTCAAGTAGGGTACCTAGCTATAGGAGTACTCTTGAGAGATTCACCTTCGTGGATGTGGAAGTGAAGGCAACTTGTTATGAAATTCTAGGCAAATACTCTAGAGCATCCACTGAACTAGGATATATGTGCAAGGCTTAAAGCACAACTATTTAGAACTTCACTCGAATAATACTTTGTGTGTATCGTTGTTAGACGAGGTAAAGTTCAAAACCAATTGTTATTGGTCGATTAAAATGTTTTTAAAAAATTTCCAGCGAGGGGTTGTTAGTAAAAATAATTTAAGTGGGGGATTTTTAATGAAAATTTTTAGAAATAATAAATTATAATATTATTTTATTCAAATGTAGCATTCTCAAGTTGCTATAGCAATGTGGAAGCCCCTTTTAATACTCACACTTTCACTTTTGGGTTGGGGCACCCAAGTTTTGGAAGGGGATGGGAGATAGGCGTTGTTGGTTGGGGTGGCAAGGCGAGGAATAAAATAATATTTTTGCTAAAAAGTTATTTTAATTTTTTTCAAATTGATTTAATTACATATTTAATTTTTGTTAAATCCTTCCCAACCATTGATTTAATTTCGTTGAACCGTTGGACCGTTTTCAACCGTTGGATCGTTTCCTCATATAATTTCCCAACCGTTTCATTTTGACCATCATAAATACCCAACCATTGGACCATTTTTTATCGTCATAATATCAGACACTGTTTTTTACCATCATTAATACCCAACCATTGGTAGCCCTCTCATCCACTGTATATAGCCAGCTCTCTTCTCATTTGATACATCACCAAAAAAAACTTCAAGCTCTCTCTTATTTCTCTCTCAAGTACTCCTTTTTCGCATATGTTTTCTTTTAGTTTTTTGAGTAAATTCTATTATCTTTTAGTTTTCCGAGCAATATTAAGTGTTAGTATATTGGTTAGTTCTAGTGCAGTTCCTATCGTTGAAATTAGAGGCTATTTTATCCTAGGAACGACGGGGCACTTGATATCTATTTGTACATCCTAGCATAGTCGCGAAACGTCTTAGAAAAAGTGAATTTGCGACTCAGACAGTTTATTAATGCGCTTCTATTTTGCATGCTTTCTTACTACGACAACGCTTAGCTGCGCCGAAGTGCAACAATAACCTCAACACCCTTGTTGTTTCGAAACTGTCAACCAACATCTAAAGCCATAATTGTTGTAGTGAAAATCTATAAAGAGTATATTAAAGTATATCAAAGTATATCAAATAACAGTGATAGAGATATGTCGTGAAATAAGAAATTAATTTCGTGCCTATGACTGTGTTGTTACATCAGTGAGCTTTTTGGACATGTTCACGGGTTGAAAGTAAGGTTTGCTGAAATGGCAATTAGTTTTTTCTTTTTTTTTCTTTTTTTAGAGAAATGGAAATTAGTTTAAGTTCTACAATTTCTGTAATATTTTAGCTTCATTTTGTTAAATATCCATGGTGTCTTTTTATTTTTCTTATTGTAAAATTTCTTATAGAAAATTCGAGAACATAATTTTTGCTATGAGCAAGCCCAATCGTGAATGTATACGTCAAACCTATGTATAATATTTCATCTTTCTAGGGGTAATTTCACAGGAAACTAAATCATTAATGCCGATGAAAAACACAGTTTCTCTCAATAATACATGAAAGCAAGTTTTCCTATTTATACACAGATTTTCTCATCTCAATCATTATATTCCAATGGATTTTAAAAAACAATTTCTACGATTTGTGGCTAACCCACTTAAACTTTGCCTTGTTTGGTGGAGATGAAAAATCCCACTAAAATAACCATATAAATAAACACTTCCTCCTTCATATAATAGAGCCACAAAACCACTTATACAAACATTCTCCCTCAAAAGAAGTCAAAATAGTAAATTATATATTCATTCTTTTTCCCCCATCAAATCCTTTTCATTACATTTCATGCAGAATCCATAAAAGTTCTAAAACTTGAAATCACAAAACTTTCTTTGCTTCTTTTTGCAGCTGAGAAGATGAGACAAAGAGTAGCGGTTGCCGTAATCATCATGTTGGCGTTGATGATTATGAACACTTTCTTCCTTGTTGATGGAAGGCATTTGAAGTTGCAAGACGAAGAGGAAGAGAAGAATCCTATTGAGAATCAAAAGTTAACAGGTAGAAAACAATATGAAACAAGTGAATATAATCACCATGGATGCTATAGAAGTGACTATAATTGTTGGAGTAATAAGGAGACGAAGGAATAA

mRNA sequence

ATGAGATACCTTAAGAAAACCCAGAACATAGGATTACATTATCAAAAGTTTCCTGTTGTTCAAGAAAGTTACTATGATGTTGATTGGAACTTCATCTTGGATGACTCAAATGTTACAAGTGGCTATATTTTTAGTAGGAAAGTAATAGCGGATCACGTATGGACTGATGATGATAACTTGGCTAATCATTTGACCAAAGGTCTAGCTAGAGAGAGTTTTTCAAAACCTCAAAAAGAATGGGACTCAAGTCTAAAGAAAATTGAATCGCCTGTAAGTGAGCTTTTTGGACATGTTCACGGGTTGAAAGTAAGGTTTGCTGAAATGGCAATTACTGAGAAGATGAGACAAAGAGTAGCGGTTGCCGTAATCATCATGTTGGCGTTGATGATTATGAACACTTTCTTCCTTGTTGATGGAAGGCATTTGAAGTTGCAAGACGAAGAGGAAGAGAAGAATCCTATTGAGAATCAAAAGTTAACAGGTAGAAAACAATATGAAACAAGTGAATATAATCACCATGGATGCTATAGAAGTGACTATAATTGTTGGAGTAATAAGGAGACGAAGGAATAA

Coding sequence (CDS)

ATGAGATACCTTAAGAAAACCCAGAACATAGGATTACATTATCAAAAGTTTCCTGTTGTTCAAGAAAGTTACTATGATGTTGATTGGAACTTCATCTTGGATGACTCAAATGTTACAAGTGGCTATATTTTTAGTAGGAAAGTAATAGCGGATCACGTATGGACTGATGATGATAACTTGGCTAATCATTTGACCAAAGGTCTAGCTAGAGAGAGTTTTTCAAAACCTCAAAAAGAATGGGACTCAAGTCTAAAGAAAATTGAATCGCCTGTAAGTGAGCTTTTTGGACATGTTCACGGGTTGAAAGTAAGGTTTGCTGAAATGGCAATTACTGAGAAGATGAGACAAAGAGTAGCGGTTGCCGTAATCATCATGTTGGCGTTGATGATTATGAACACTTTCTTCCTTGTTGATGGAAGGCATTTGAAGTTGCAAGACGAAGAGGAAGAGAAGAATCCTATTGAGAATCAAAAGTTAACAGGTAGAAAACAATATGAAACAAGTGAATATAATCACCATGGATGCTATAGAAGTGACTATAATTGTTGGAGTAATAAGGAGACGAAGGAATAA
Homology
[Close]
BLAST of CSPI01G13580 vs. NCBI nr
Match: gi|658030593|ref|XP_008350742.1| (PREDICTED: LOW QUALITY PROTEIN: formin-like protein 11 [Malus domestica])

HSP 1 Score: 67.8 bits (164), Expect = 2.4e-08
Identity = 30/45 (66.67%), Postives = 33/45 (73.33%), Query Frame = 1 

Query: 1   MRYLKKTQNIGLHYQKFPVVQESYYDVDWNFILDDSNVTSGYIFS 46
           MRYLK+T N  L Y+KFP V E Y DVDWN + DDS  TSGYIFS
Sbjct: 237 MRYLKRTMNFRLQYEKFPAVLEGYIDVDWNTLSDDSKATSGYIFS 281

[Close]
BLAST of CSPI01G13580 vs. NCBI nr
Match: gi|571442614|ref|XP_006575788.1| (PREDICTED: uncharacterized protein LOC102669067 [Glycine max])

HSP 1 Score: 64.7 bits (156), Expect = 2.0e-07
Identity = 27/45 (60.00%), Postives = 34/45 (75.56%), Query Frame = 1 

Query: 1   MRYLKKTQNIGLHYQKFPVVQESYYDVDWNFILDDSNVTSGYIFS 46
           MRYLK+T N+GLHY++FP + E Y D DWN + +DS  TSGYI S
Sbjct: 159 MRYLKRTINLGLHYKRFPAILEGYSDADWNTLSNDSKATSGYISS 203

[Close]
BLAST of CSPI01G13580 vs. NCBI nr
Match: gi|657995482|ref|XP_008390079.1| (PREDICTED: pentatricopeptide repeat-containing protein At2g04860 [Malus domestica])

HSP 1 Score: 60.5 bits (145), Expect = 3.8e-06
Identity = 26/45 (57.78%), Postives = 33/45 (73.33%), Query Frame = 1 

Query: 1   MRYLKKTQNIGLHYQKFPVVQESYYDVDWNFILDDSNVTSGYIFS 46
           +RYLK+T N GL Y+KFP V E Y + DWN + +DS  TSGYIF+
Sbjct: 60  IRYLKRTINFGLCYEKFPAVLEGYSNADWNTLSEDSKATSGYIFN 104

The following BLAST results are available for this feature:
BLAST of CSPI01G13580 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI01G13580 vs. TrEMBL
Match NameE-valueIdentityDescription
BLAST of CSPI01G13580 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI01G13580 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|658030593|ref|XP_008350742.1|2.4e-0866.67PREDICTED: LOW QUALITY PROTEIN: formin-like protein 11 [Malus domestica][more]
gi|571442614|ref|XP_006575788.1|2.0e-0760.00PREDICTED: uncharacterized protein LOC102669067 [Glycine max][more]
gi|657995482|ref|XP_008390079.1|3.8e-0657.78PREDICTED: pentatricopeptide repeat-containing protein At2g04860 [Malus domestic... [more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI01G13580.1CSPI01G13580.1mRNA