Lsi03G000240 (gene) Bottle gourd (USVL1VR-Ls)

Overview
NameLsi03G000240
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionUnknown protein
Locationchr03 : 446936 .. 447166 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGAAGACTAACACTTGGTGCAATCCTCATGTTGGTGCTGATCAGCTCGGCCGTACTAATCGAAGGGACAACTCAACGTCTGATCGATAGACACGAGCAGACACTAAGGGGGAATGAGAATGAAAAGGCGAAAAATAGGCGCCCTAATGACAATGGTGAATATAATCACCATGGGTGTCCTAGAAGAGATGTGGATTGTTGGAGTACCGCAAAACAAACTAGGGACTAA

mRNA sequence

ATGAGAAGACTAACACTTGGTGCAATCCTCATGTTGGTGCTGATCAGCTCGGCCGTACTAATCGAAGGGACAACTCAACGTCTGATCGATAGACACGAGCAGACACTAAGGGGGAATGAGAATGAAAAGGCGAAAAATAGGCGCCCTAATGACAATGGTGAATATAATCACCATGGGTGTCCTAGAAGAGATGTGGATTGTTGGAGTACCGCAAAACAAACTAGGGACTAA

Coding sequence (CDS)

ATGAGAAGACTAACACTTGGTGCAATCCTCATGTTGGTGCTGATCAGCTCGGCCGTACTAATCGAAGGGACAACTCAACGTCTGATCGATAGACACGAGCAGACACTAAGGGGGAATGAGAATGAAAAGGCGAAAAATAGGCGCCCTAATGACAATGGTGAATATAATCACCATGGGTGTCCTAGAAGAGATGTGGATTGTTGGAGTACCGCAAAACAAACTAGGGACTAA

Protein sequence

MRRLTLGAILMLVLISSAVLIEGTTQRLIDRHEQTLRGNENEKAKNRRPNDNGEYNHHGCPRRDVDCWSTAKQTRD
Homology
[Close]
BLAST of Lsi03G000240 vs. TrEMBL
Match: A0A0A0LV16_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G119910 PE=4 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 8.3e-20
Identity = 59/81 (72.84%), Postives = 66/81 (81.48%), Query Frame = 1 

Query: 1  MRRLTLGAILMLVLISSAVLIEGTT----QRLIDRHEQTLRG-NENEKAKNRRPNDNGEY 60
          MRRLTL AILMLVLI+S +LIEGTT    +RLID ++Q  R  NENEKAK RRPND+GEY
Sbjct: 1  MRRLTLAAILMLVLITSVMLIEGTTLRSPRRLIDINKQREREINENEKAKTRRPNDSGEY 60

Query: 61 NHHGCPRRDVDCWSTAKQTRD 77
          NHHGC RRDVDCWS AKQ+ D
Sbjct: 61 NHHGCLRRDVDCWSNAKQSTD 81

[Close]
BLAST of Lsi03G000240 vs. NCBI nr
Match: gi|700209728|gb|KGN64824.1| (hypothetical protein Csa_1G119910 [Cucumis sativus])

HSP 1 Score: 104.0 bits (258), Expect = 1.2e-19
Identity = 59/81 (72.84%), Postives = 66/81 (81.48%), Query Frame = 1 

Query: 1  MRRLTLGAILMLVLISSAVLIEGTT----QRLIDRHEQTLRG-NENEKAKNRRPNDNGEY 60
          MRRLTL AILMLVLI+S +LIEGTT    +RLID ++Q  R  NENEKAK RRPND+GEY
Sbjct: 1  MRRLTLAAILMLVLITSVMLIEGTTLRSPRRLIDINKQREREINENEKAKTRRPNDSGEY 60

Query: 61 NHHGCPRRDVDCWSTAKQTRD 77
          NHHGC RRDVDCWS AKQ+ D
Sbjct: 61 NHHGCLRRDVDCWSNAKQSTD 81

The following BLAST results are available for this feature:
BLAST of Lsi03G000240 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Lsi03G000240 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LV16_CUCSA8.3e-2072.84Uncharacterized protein OS=Cucumis sativus GN=Csa_1G119910 PE=4 SV=1[more]
BLAST of Lsi03G000240 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Lsi03G000240 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700209728|gb|KGN64824.1|1.2e-1972.84hypothetical protein Csa_1G119910 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi03G000240.1Lsi03G000240.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Lsi03G000240Csa1G119910Cucumber (Chinese Long) v2culsiB044
Lsi03G000240CSPI01G13600Wild cucumber (PI 183967)cpilsiB046
Lsi03G000240Cla005105Watermelon (97103) v1lsiwmB249
Lsi03G000240ClCG03G002910Watermelon (Charleston Gray)lsiwcgB238
Lsi03G000240Cla97C03G053990Watermelon (97103) v2lsiwmbB232
Lsi03G000240Bhi08G000182Wax gourdlsiwgoB337
Lsi03G000240Cp4.1LG20g07200Cucurbita pepo (Zucchini)cpelsiB429
Lsi03G000240CsaV3_1G013840Cucumber (Chinese Long) v3cuclsiB048
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Lsi03G000240Melon (DHL92) v3.6.1lsimedB254
Lsi03G000240Melon (DHL92) v3.6.1lsimedB255
Lsi03G000240Silver-seed gourdcarlsiB310
Lsi03G000240Silver-seed gourdcarlsiB404
Lsi03G000240Cucumber (Chinese Long) v3cuclsiB478
Lsi03G000240Watermelon (97103) v2lsiwmbB231
Lsi03G000240Bottle gourd (USVL1VR-Ls)lsilsiB041
Lsi03G000240Cucurbita maxima (Rimu)cmalsiB212
Lsi03G000240Cucurbita maxima (Rimu)cmalsiB423
Lsi03G000240Cucurbita maxima (Rimu)cmalsiB525
Lsi03G000240Cucurbita moschata (Rifu)cmolsiB203
Lsi03G000240Cucurbita moschata (Rifu)cmolsiB410
Lsi03G000240Cucurbita moschata (Rifu)cmolsiB510
Lsi03G000240Cucurbita pepo (Zucchini)cpelsiB242
Lsi03G000240Cucurbita pepo (Zucchini)cpelsiB453
Lsi03G000240Wild cucumber (PI 183967)cpilsiB456
Lsi03G000240Cucumber (Chinese Long) v2culsiB449
Lsi03G000240Melon (DHL92) v3.5.1lsimeB243
Lsi03G000240Melon (DHL92) v3.5.1lsimeB244
Lsi03G000240Watermelon (Charleston Gray)lsiwcgB224
Lsi03G000240Watermelon (Charleston Gray)lsiwcgB237
Lsi03G000240Watermelon (97103) v1lsiwmB274
Lsi03G000240Cucumber (Gy14) v2cgyblsiB041
Lsi03G000240Cucumber (Gy14) v2cgyblsiB415