Cla97C03G053990 (gene) Watermelon (97103) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla97C03G053990
Type	gene
Organism	Citrullus lanatus (Watermelon (97103) v2)
Description	Unknown protein
Location	Cla97Chr03 : 3239159 .. 3239401 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGAAGACTAACACTTGGTGCAATCCTCATGTTGGTGCTGATCAGCTCGGCCGTACTAATTGAAGGGACGACTCGTAGGAGTCTCCAACGACTGATTGATAGACACGAGCAAACACTACGAGGGAATGAGAATGAAAAGGCCAAAAATAGGCATCCTAGTGATAGTGGTGAATACAATCACCATGGGTGTCCTAGAAGAGATGTGGATTGTTGGAGTACCACAAAACAAACTGGGGATTAA

mRNA sequence

ATGAGAAGACTAACACTTGGTGCAATCCTCATGTTGGTGCTGATCAGCTCGGCCGTACTAATTGAAGGGACGACTCGTAGGAGTCTCCAACGACTGATTGATAGACACGAGCAAACACTACGAGGGAATGAGAATGAAAAGGCCAAAAATAGGCATCCTAGTGATAGTGGTGAATACAATCACCATGGGTGTCCTAGAAGAGATGTGGATTGTTGGAGTACCACAAAACAAACTGGGGATTAA

Coding sequence (CDS)

ATGAGAAGACTAACACTTGGTGCAATCCTCATGTTGGTGCTGATCAGCTCGGCCGTACTAATTGAAGGGACGACTCGTAGGAGTCTCCAACGACTGATTGATAGACACGAGCAAACACTACGAGGGAATGAGAATGAAAAGGCCAAAAATAGGCATCCTAGTGATAGTGGTGAATACAATCACCATGGGTGTCCTAGAAGAGATGTGGATTGTTGGAGTACCACAAAACAAACTGGGGATTAA

Protein sequence

MRRLTLGAILMLVLISSAVLIEGTTRRSLQRLIDRHEQTLRGNENEKAKNRHPSDSGEYNHHGCPRRDVDCWSTTKQTGD

Homology

[Close]

BLAST of Cla97C03G053990 vs. NCBI nr
Match: KGN64824.1 (hypothetical protein Csa_1G119910 [Cucumis sativus])

HSP 1 Score: 106.3 bits (264), Expect = 4.9e-20
Identity = 59/81 (72.84%), Postives = 66/81 (81.48%), Query Frame = 0


Query: 1  MRRLTLGAILMLVLISSAVLIEGTTRRSLQRLIDRHEQTLRG-NENEKAKNRHPSDSGEY 60
          MRRLTL AILMLVLI+S +LIEGTT RS +RLID ++Q  R  NENEKAK R P+DSGEY
Sbjct: 1  MRRLTLAAILMLVLITSVMLIEGTTLRSPRRLIDINKQREREINENEKAKTRRPNDSGEY 60

Query: 61 NHHGCPRRDVDCWSTTKQTGD 81
          NHHGC RRDVDCWS  KQ+ D
Sbjct: 61 NHHGCLRRDVDCWSNAKQSTD 81

[Close]

BLAST of Cla97C03G053990 vs. TrEMBL
Match: tr|A0A0A0LV16|A0A0A0LV16_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G119910 PE=4 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 3.2e-20
Identity = 59/81 (72.84%), Postives = 66/81 (81.48%), Query Frame = 0


Query: 1  MRRLTLGAILMLVLISSAVLIEGTTRRSLQRLIDRHEQTLRG-NENEKAKNRHPSDSGEY 60
          MRRLTL AILMLVLI+S +LIEGTT RS +RLID ++Q  R  NENEKAK R P+DSGEY
Sbjct: 1  MRRLTLAAILMLVLITSVMLIEGTTLRSPRRLIDINKQREREINENEKAKTRRPNDSGEY 60

Query: 61 NHHGCPRRDVDCWSTTKQTGD 81
          NHHGC RRDVDCWS  KQ+ D
Sbjct: 61 NHHGCLRRDVDCWSNAKQSTD 81

The following BLAST results are available for this feature:

BLAST of Cla97C03G053990 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN64824.1	4.9e-20	72.84	hypothetical protein Csa_1G119910 [Cucumis sativus]	[more]

BLAST of Cla97C03G053990 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LV16\|A0A0A0LV16_CUCSA	3.2e-20	72.84	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G119910 PE=4 SV=1	[more]

BLAST of Cla97C03G053990 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Cla97C03G053990 vs. TAIR10


Match Name	E-value	Identity	Description

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla97C03G053990.1	Cla97C03G053990.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon 97103 v2
Date Performed: 2019-05-12


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 26..46
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 38..80
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 38..69

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla97C03G053990	Cla005105	Watermelon (97103) v1	wmwmbB124
Cla97C03G053990	Csa1G119910	Cucumber (Chinese Long) v2	cuwmbB034
Cla97C03G053990	ClCG03G002910	Watermelon (Charleston Gray)	wcgwmbB186
Cla97C03G053990	CSPI01G13600	Wild cucumber (PI 183967)	cpiwmbB034
Cla97C03G053990	Lsi03G000240	Bottle gourd (USVL1VR-Ls)	lsiwmbB232
Cla97C03G053990	CsaV3_1G013840	Cucumber (Chinese Long) v3	cucwmbB032

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla97C03G053990	Silver-seed gourd	carwmbB0467
Cla97C03G053990	Cucumber (Gy14) v2	cgybwmbB034
Cla97C03G053990	Cucurbita maxima (Rimu)	cmawmbB225
Cla97C03G053990	Cucurbita maxima (Rimu)	cmawmbB467
Cla97C03G053990	Cucurbita moschata (Rifu)	cmowmbB209
Cla97C03G053990	Cucurbita moschata (Rifu)	cmowmbB448
Cla97C03G053990	Melon (DHL92) v3.6.1	medwmbB142
Cla97C03G053990	Melon (DHL92) v3.5.1	mewmbB153
Cla97C03G053990	Wax gourd	wgowmbB481