CSPI01G13600 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI01G13600
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	Unknown protein
Location	Chr1 : 9124779 .. 9125488 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TCACAATTCAACAACCTAACCCTCATTTCCACTAAATACTTCAATTACAAGTCCCAATAACAACAGAAAAGAAACTTCCAAAACTTAGCGTTTTCTTTCTCCTCTTTTGATTTTCATTCCAAAAATCTAATCAGCCCTTTTCTTCCCTCCTCTCCTCATTATAGTTAACAGAGGTTTGTGTGAAAAATGAGAAGACTAACACTTGCTGCAATCCTCCTGTTGGTGTTGATCACCTCGGTCATGCTAATTGAAGGGACAACTCTTAGGAGTCCCCGACGACTGATTGATATAAACAAGCAGAGAGAGCGGGAGATCAACGAGAATGAGAAGGCAAAAACTAGGCGACCTAACGATAGTGGTGAATACAATCACCATGGATGTCTTAGAAGAGATGTGGATTGTTGGAGTAACGCAAAACAAAGTACGGACTAATGTAGATATACACAATCAAAGTTAGCCGGCTAAATGTTTTTGTGTATCTAAATAAATAACTAAGACTTCGGTTGGTAATCATTCGCCGGCTAGTTATAGTACTTTACATCTTTCCGTTCTGTTTTTGTAATATATGATGGAGTAAGAACTTCTTGTTTGATTAGTAAATGATAAATATTTGAGTTTTGTAAGATTATATGTTTGGTTATTTTTCTAACTTGTCTGTGAGACTAAAGTAAAATTTGTTTAAAGGAAATAAAAATATTCATAATTCCCAT

mRNA sequence

ATGAGAAGACTAACACTTGCTGCAATCCTCCTGTTGGTGTTGATCACCTCGGTCATGCTAATTGAAGGGACAACTCTTAGGAGTCCCCGACGACTGATTGATATAAACAAGCAGAGAGAGCGGGAGATCAACGAGAATGAGAAGGCAAAAACTAGGCGACCTAACGATAGTGGTGAATACAATCACCATGGATGTCTTAGAAGAGATGTGGATTGTTGGAGTAACGCAAAACAAAGTACGGACTAA

Coding sequence (CDS)

ATGAGAAGACTAACACTTGCTGCAATCCTCCTGTTGGTGTTGATCACCTCGGTCATGCTAATTGAAGGGACAACTCTTAGGAGTCCCCGACGACTGATTGATATAAACAAGCAGAGAGAGCGGGAGATCAACGAGAATGAGAAGGCAAAAACTAGGCGACCTAACGATAGTGGTGAATACAATCACCATGGATGTCTTAGAAGAGATGTGGATTGTTGGAGTAACGCAAAACAAAGTACGGACTAA

Homology

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BLAST of CSPI01G13600 vs. TrEMBL
Match: A0A0A0LV16_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G119910 PE=4 SV=1)

HSP 1 Score: 154.5 bits (389), Expect = 5.8e-35
Identity = 80/81 (98.77%), Postives = 81/81 (100.00%), Query Frame = 1


Query: 1  MRRLTLAAILLLVLITSVMLIEGTTLRSPRRLIDINKQREREINENEKAKTRRPNDSGEY 60
          MRRLTLAAIL+LVLITSVMLIEGTTLRSPRRLIDINKQREREINENEKAKTRRPNDSGEY
Sbjct: 1  MRRLTLAAILMLVLITSVMLIEGTTLRSPRRLIDINKQREREINENEKAKTRRPNDSGEY 60

Query: 61 NHHGCLRRDVDCWSNAKQSTD 82
          NHHGCLRRDVDCWSNAKQSTD
Sbjct: 61 NHHGCLRRDVDCWSNAKQSTD 81

[Close]

BLAST of CSPI01G13600 vs. NCBI nr
Match: gi|700209728|gb|KGN64824.1| (hypothetical protein Csa_1G119910 [Cucumis sativus])

HSP 1 Score: 154.5 bits (389), Expect = 8.3e-35
Identity = 80/81 (98.77%), Postives = 81/81 (100.00%), Query Frame = 1


Query: 1  MRRLTLAAILLLVLITSVMLIEGTTLRSPRRLIDINKQREREINENEKAKTRRPNDSGEY 60
          MRRLTLAAIL+LVLITSVMLIEGTTLRSPRRLIDINKQREREINENEKAKTRRPNDSGEY
Sbjct: 1  MRRLTLAAILMLVLITSVMLIEGTTLRSPRRLIDINKQREREINENEKAKTRRPNDSGEY 60

Query: 61 NHHGCLRRDVDCWSNAKQSTD 82
          NHHGCLRRDVDCWSNAKQSTD
Sbjct: 61 NHHGCLRRDVDCWSNAKQSTD 81

The following BLAST results are available for this feature:

BLAST of CSPI01G13600 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CSPI01G13600 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LV16_CUCSA	5.8e-35	98.77	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G119910 PE=4 SV=1	[more]

BLAST of CSPI01G13600 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CSPI01G13600 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700209728\|gb\|KGN64824.1\|	8.3e-35	98.77	hypothetical protein Csa_1G119910 [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI01G13600.1	CSPI01G13600.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	unknown	Coil	Coil	coord: 32..52 scor

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CSPI01G13600	Cla005105	Watermelon (97103) v1	cpiwmB012
CSPI01G13600	Csa1G119910	Cucumber (Chinese Long) v2	cpicuB000
CSPI01G13600	ClCG03G002910	Watermelon (Charleston Gray)	cpiwcgB040
CSPI01G13600	Lsi03G000240	Bottle gourd (USVL1VR-Ls)	cpilsiB046
CSPI01G13600	Cla97C03G053990	Watermelon (97103) v2	cpiwmbB034
CSPI01G13600	Cp4.1LG20g07200	Cucurbita pepo (Zucchini)	cpecpiB518

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI01G13600	Melon (DHL92) v3.6.1	cpimedB011
CSPI01G13600	Cucumber (Gy14) v2	cgybcpiB001
CSPI01G13600	Silver-seed gourd	carcpiB0477
CSPI01G13600	Cucumber (Chinese Long) v3	cpicucB001
CSPI01G13600	Wax gourd	cpiwgoB017
CSPI01G13600	Wax gourd	cpiwgoB049
CSPI01G13600	Wild cucumber (PI 183967)	cpicpiB017
CSPI01G13600	Cucurbita maxima (Rimu)	cmacpiB205
CSPI01G13600	Cucurbita maxima (Rimu)	cmacpiB434
CSPI01G13600	Cucurbita moschata (Rifu)	cmocpiB192
CSPI01G13600	Cucurbita moschata (Rifu)	cmocpiB425
CSPI01G13600	Cucumber (Chinese Long) v2	cpicuB026
CSPI01G13600	Melon (DHL92) v3.5.1	cpimeB011
CSPI01G13600	Watermelon (Charleston Gray)	cpiwcgB007
CSPI01G13600	Watermelon (97103) v1	cpiwmB007
CSPI01G13600	Cucurbita pepo (Zucchini)	cpecpiB530