Cla005105.1 (mRNA) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla005105
Type	mRNA
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Unknown Protein (AHRD V1)
Location	Chr3 : 3263306 .. 3263548 (-)
Sequence length	243

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGAAGACTAACACTTGGTGCAATCCTCATGTTGGTGCTGATCAGCTCGGCCGTACTAATTGAAGGGACGACTCGTAGGAGTCTCCAACGACTGATTGATAGACACGAGCAAACACTACGAGGGAATGAGAATGAAAAGGCCAAAAATAGGCATCCTAGTGATAGTGGTGAATACAATCACCATGGGTGTCCTAGAAGAGATGTGGATTGTTGGAGTACCACAAAACAAACTGGGGATTAA

mRNA sequence

ATGAGAAGACTAACACTTGGTGCAATCCTCATGTTGGTGCTGATCAGCTCGGCCGTACTAATTGAAGGGACGACTCGTAGGAGTCTCCAACGACTGATTGATAGACACGAGCAAACACTACGAGGGAATGAGAATGAAAAGGCCAAAAATAGGCATCCTAGTGATAGTGGTGAATACAATCACCATGGGTGTCCTAGAAGAGATGTGGATTGTTGGAGTACCACAAAACAAACTGGGGATTAA

Coding sequence (CDS)

ATGAGAAGACTAACACTTGGTGCAATCCTCATGTTGGTGCTGATCAGCTCGGCCGTACTAATTGAAGGGACGACTCGTAGGAGTCTCCAACGACTGATTGATAGACACGAGCAAACACTACGAGGGAATGAGAATGAAAAGGCCAAAAATAGGCATCCTAGTGATAGTGGTGAATACAATCACCATGGGTGTCCTAGAAGAGATGTGGATTGTTGGAGTACCACAAAACAAACTGGGGATTAA

Protein sequence

MRRLTLGAILMLVLISSAVLIEGTTRRSLQRLIDRHEQTLRGNENEKAKNRHPSDSGEYNHHGCPRRDVDCWSTTKQTGD

Homology

[Close]

BLAST of Cla005105 vs. TrEMBL
Match: A0A0A0LV16_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G119910 PE=4 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 3.8e-23
Identity = 59/81 (72.84%), Postives = 66/81 (81.48%), Query Frame = 1


Query: 1  MRRLTLGAILMLVLISSAVLIEGTTRRSLQRLIDRHEQTLRG-NENEKAKNRHPSDSGEY 60
          MRRLTL AILMLVLI+S +LIEGTT RS +RLID ++Q  R  NENEKAK R P+DSGEY
Sbjct: 1  MRRLTLAAILMLVLITSVMLIEGTTLRSPRRLIDINKQREREINENEKAKTRRPNDSGEY 60

Query: 61 NHHGCPRRDVDCWSTTKQTGD 81
          NHHGC RRDVDCWS  KQ+ D
Sbjct: 61 NHHGCLRRDVDCWSNAKQSTD 81

[Close]

BLAST of Cla005105 vs. NCBI nr
Match: gi|700209728|gb|KGN64824.1| (hypothetical protein Csa_1G119910 [Cucumis sativus])

HSP 1 Score: 115.2 bits (287), Expect = 5.4e-23
Identity = 59/81 (72.84%), Postives = 66/81 (81.48%), Query Frame = 1


Query: 1  MRRLTLGAILMLVLISSAVLIEGTTRRSLQRLIDRHEQTLRG-NENEKAKNRHPSDSGEY 60
          MRRLTL AILMLVLI+S +LIEGTT RS +RLID ++Q  R  NENEKAK R P+DSGEY
Sbjct: 1  MRRLTLAAILMLVLITSVMLIEGTTLRSPRRLIDINKQREREINENEKAKTRRPNDSGEY 60

Query: 61 NHHGCPRRDVDCWSTTKQTGD 81
          NHHGC RRDVDCWS  KQ+ D
Sbjct: 61 NHHGCLRRDVDCWSNAKQSTD 81

The following BLAST results are available for this feature:

BLAST of Cla005105 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LV16_CUCSA	3.8e-23	72.84	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G119910 PE=4 SV=1	[more]

BLAST of Cla005105 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700209728\|gb\|KGN64824.1\|	5.4e-23	72.84	hypothetical protein Csa_1G119910 [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cla005105	Cla005105	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cla005105	Cla005105.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cla005105.1.cds1	Cla005105.1.cds1	CDS

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	unknown	Coil	Coil	coord: 26..46 scor