Cla004219 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla004219
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Unknown Protein (AHRD V1)
Location	Chr5 : 8822862 .. 8824908 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCCATCAATTTTGCTCTTCAGTCTCTCTGTAACAATGTTTTCCCATTTCCAACTTCAAATCATCCCGAAATTTCATCGAATTGGCGTCCCCATTCCACTAAACTCCCACAATTAACCAACCCCATCTCTCAATCCTTCAGAAAAAGCTTCGCCATTGTTTCTTCCAAGTCGTCCGAAGCAGAAGAGCTCTCTACTCCAGAGGACGAGTGGCTGAACAAGCTTCCAGACAAGAAGAAGCCCTTGTACTCACACAGTTTGCCTTGCCTCGAGGCTTGGTTAAAGAACTTGGGATTTTACCAGAGTAAAGAGGACCGAGCTGTGTGGCTAATCGAGAAGCCTGAATGGCACGCTCAGCTCTCACTCGATGTCACCGACCTCTATATAAGGTTTGCAATAAGGCCCTTTTTCTTTTTTTTGTGATTTTATGATAAGGATTTGTGTTTCTCAATCTGGGTTTCTGTTGTTTATCGTTTAATTGCATTTTTCTGATTAGGGTTACTTCGTGAGTTGCATTGGGGATGAATCGTTTAGTGTTGTTTCACATCTTACTTTCTTACTTCGAAACAAACATTAGTTTTAGAATTTTTGTTGGAATTTCCTTTTCTCAAGATTGCTCTTTGGGTTGTTTAACGTGTGTAAGAAATTAAGGGAGTTGAATTCAGGCAGGGCATTTGGACTCTGGGGTTGTGTTCATTCAAGCAAGCATCTATATGCCAACTGCTTCTTTTAGGTTGTTTAAGTGATGCATGTTTTATTTATTAAATCTCCATGGAGAAAAGAATAATGATGCCTTGCAGTTGTCTTTATTGAAACTATGGTCAAGACTCAGTTGGGAGGATGGACAGTGCTCTATTTTTTATGCTCTGGACTGGTTATAGAATAATTATAGAGAGATGGTTTTGTAAATGTTTGAAGGATATTGATTGAGCTTGTAAATTTTTGAGATGTCGAAGATGAAGTATATTTGTCCAGACTCCAGATAGAGGAAGAGAGTATGCAGTGTGTAAATTGCAAAGGTTGCTTACAATGTTTAAATGGAAACCAGATCTATTTCGGTTCTTGGCGGTCTCTATTGAAGTGTGAACTTGTTGATGATGCAATAGAACTGTTACCCATTCTTGCAAATGGAGGACTTTAGTTTAGTTCCACTGTTACATCCAGTTCAATTCATCCTTGTAGAGTAGAGGATGGTGAAGATTCTTAGGAGAGTGAAAAATATGTCAAACAAGGAAGCAGGGAGAATTTTATAGCTTGGCTGATACTGTGTCTTTTTTACACTTCATTGGGTTTTAAAATCTCTGGGGTGCTAGTAAACGTCTTGCATTGCATCAAAATGTTTAAAACAAGGAATAAACTTTCCTAATTTTTTGATAGTGAGAGTAGGAGAGAGGGCTAGCTGGTGGTGCGTTTCCTTCCAATCATGGCTTTTGAGTCTGATTATTTGTTATCAATCATTGTTAAGAATACTTTTCTTACTTACGATTTGATTGTAAAACACAACGATCACAATATAAGAGACAAGATAACCTCTCCATTATCCCGCTCAAGAGTGCTGGTAATCTCTCCCAAACATAGAACCACCGTTCTATTAAAAACACAAAACATAACAATAACAAACAGACTGCTTACAATTATACTACTGCTAGCCTAACAGCCGTTCTAACGAACATCCCTTTTCCCACTGACGAATTGCCCTGGTCAGTTCCCTTATTATCCTTTCTAGTGAATACACGATTGGGGGCTAACACATTGCCCCAACCCCTCAATCACATACACATGCATACACACGAAAATGAAAGCGGCAATGGAAAACACCTATTCTATTATTGGTTTTGTGGTGAAAATTTTCGTACTGGTTTGAATTTGATCCTTACACAATGCACATGTTTGTTTGTTTCATTTCTTTTTCTTTTTTGTTTTTTTTTTTTTTTTGGGCAGATATCTAAAGAGTGGACCAGGAAATCTTGAGAAAGATGTGGAGAGGAGATTTAGCTATGCACTAAGCAGAGAAGATATTGAGAATGCTGTACTTGGAGGACCTTGA

mRNA sequence

ATGTCCATCAATTTTGCTCTTCAGTCTCTCTGTAACAATGTTTTCCCATTTCCAACTTCAAATCATCCCGAAATTTCATCGAATTGGCGTCCCCATTCCACTAAACTCCCACAATTAACCAACCCCATCTCTCAATCCTTCAGAAAAAGCTTCGCCATTGTTTCTTCCAAGTCGTCCGAAGCAGAAGAGCTCTCTACTCCAGAGGACGAGTGGCTGAACAAGCTTCCAGACAAGAAGAAGCCCTTGTACTCACACAGTTTGCCTTGCCTCGAGGCTTGGTTAAAGAACTTGGGATTTTACCAGAGTAAAGAGGACCGAGCTGTGTGGCTAATCGAGAAGCCTGAATGGCACGCTCAGCTCTCACTCGATGTCACCGACCTCTATATAAGATATCTAAAGAGTGGACCAGGAAATCTTGAGAAAGATGTGGAGAGGAGATTTAGCTATGCACTAAGCAGAGAAGATATTGAGAATGCTGTACTTGGAGGACCTTGA

Coding sequence (CDS)

ATGTCCATCAATTTTGCTCTTCAGTCTCTCTGTAACAATGTTTTCCCATTTCCAACTTCAAATCATCCCGAAATTTCATCGAATTGGCGTCCCCATTCCACTAAACTCCCACAATTAACCAACCCCATCTCTCAATCCTTCAGAAAAAGCTTCGCCATTGTTTCTTCCAAGTCGTCCGAAGCAGAAGAGCTCTCTACTCCAGAGGACGAGTGGCTGAACAAGCTTCCAGACAAGAAGAAGCCCTTGTACTCACACAGTTTGCCTTGCCTCGAGGCTTGGTTAAAGAACTTGGGATTTTACCAGAGTAAAGAGGACCGAGCTGTGTGGCTAATCGAGAAGCCTGAATGGCACGCTCAGCTCTCACTCGATGTCACCGACCTCTATATAAGATATCTAAAGAGTGGACCAGGAAATCTTGAGAAAGATGTGGAGAGGAGATTTAGCTATGCACTAAGCAGAGAAGATATTGAGAATGCTGTACTTGGAGGACCTTGA

Protein sequence

MSINFALQSLCNNVFPFPTSNHPEISSNWRPHSTKLPQLTNPISQSFRKSFAIVSSKSSEAEELSTPEDEWLNKLPDKKKPLYSHSLPCLEAWLKNLGFYQSKEDRAVWLIEKPEWHAQLSLDVTDLYIRYLKSGPGNLEKDVERRFSYALSREDIENAVLGGP

Homology

[Close]

BLAST of Cla004219 vs. TrEMBL
Match: W9RU92_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_011480 PE=4 SV=1)

HSP 1 Score: 223.8 bits (569), Expect = 1.5e-55
Identity = 112/158 (70.89%), Postives = 126/158 (79.75%), Query Frame = 1


Query: 12  NNVFPFPTSNH-----PEISSNWRPHSTKLPQLTNPISQSFRKSFAIVSSKSSEAEELST 71
           +N+  F +S+      PE  +     S K P    P+++  RK      SKSSEAEELS+
Sbjct: 12  SNILSFTSSSSIPSKVPESPALSPSISRKFPAFCKPLARPPRKLHLRSRSKSSEAEELSS 71

Query: 72  PEDEWLNKLPDKKKPLYSHSLPCLEAWLKNLGFYQSKEDRAVWLIEKPEWHAQLSLDVTD 131
           PEDEWL KLPDKKKPLYSHSLPC+EAWL++LGFYQSKEDRAVWL+EK +WHAQLSLDVTD
Sbjct: 72  PEDEWLKKLPDKKKPLYSHSLPCIEAWLRSLGFYQSKEDRAVWLVEKADWHAQLSLDVTD 131

Query: 132 LYIRYLKSGPGNLEKDVERRFSYALSREDIENAVLGGP 165
           LYIRYLKSGPGNLEKDVERRFSYALSREDIENAVLGGP
Sbjct: 132 LYIRYLKSGPGNLEKDVERRFSYALSREDIENAVLGGP 169

[Close]

BLAST of Cla004219 vs. TrEMBL
Match: M5X0W9_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012623mg PE=4 SV=1)

HSP 1 Score: 221.5 bits (563), Expect = 7.7e-55
Identity = 113/159 (71.07%), Postives = 130/159 (81.76%), Query Frame = 1


Query: 9   SLCNNVFP-FPTSNHPEISSNWRPHSTKLPQLTN-PISQSFRKSFAIVSSKSSEAEE-LS 68
           S+ +++FP +PT           P+ + LP++T  P++ S RK    V SK SEAEE LS
Sbjct: 14  SMPSSIFPRYPT-----------PYPSLLPKITPYPLTHSSRKLSVPVFSKPSEAEEELS 73

Query: 69  TPEDEWLNKLPDKKKPLYSHSLPCLEAWLKNLGFYQSKEDRAVWLIEKPEWHAQLSLDVT 128
            PEDEWL +LPDKKKPLYSHSLPC+EAWL+NLGFYQSKEDRAVWL+EKPEW AQLSLDVT
Sbjct: 74  APEDEWLKRLPDKKKPLYSHSLPCIEAWLRNLGFYQSKEDRAVWLVEKPEWQAQLSLDVT 133

Query: 129 DLYIRYLKSGPGNLEKDVERRFSYALSREDIENAVLGGP 165
           DLY+RYLK+GPGNLEKDVERRFSYALSREDIENAVLGGP
Sbjct: 134 DLYVRYLKTGPGNLEKDVERRFSYALSREDIENAVLGGP 161

[Close]

BLAST of Cla004219 vs. TrEMBL
Match: A0A061G0N6_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_015318 PE=4 SV=1)

HSP 1 Score: 218.0 bits (554), Expect = 8.5e-54
Identity = 103/122 (84.43%), Postives = 112/122 (91.80%), Query Frame = 1


Query: 43  ISQSFRKSFAIVSSKSSEAEELSTPEDEWLNKLPDKKKPLYSHSLPCLEAWLKNLGFYQS 102
           +S S RK    VSSKSSEAEEL T EDEWLN+LPDK KPLYSHSLPC+EAWL++LGF QS
Sbjct: 44  VSHSQRKIVTFVSSKSSEAEELPTAEDEWLNRLPDKNKPLYSHSLPCIEAWLRSLGFCQS 103

Query: 103 KEDRAVWLIEKPEWHAQLSLDVTDLYIRYLKSGPGNLEKDVERRFSYALSREDIENAVLG 162
           +EDRAVWLIEKP+WHAQLSLDVTDLYIRYLKSGPGNLE+DVERRFSYALSREDIENA+LG
Sbjct: 104 REDRAVWLIEKPDWHAQLSLDVTDLYIRYLKSGPGNLERDVERRFSYALSREDIENAILG 163

Query: 163 GP 165
           GP
Sbjct: 164 GP 165

[Close]

BLAST of Cla004219 vs. TrEMBL
Match: A0A0D2PAE3_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_004G116000 PE=4 SV=1)

HSP 1 Score: 216.5 bits (550), Expect = 2.5e-53
Identity = 102/122 (83.61%), Postives = 112/122 (91.80%), Query Frame = 1


Query: 43  ISQSFRKSFAIVSSKSSEAEELSTPEDEWLNKLPDKKKPLYSHSLPCLEAWLKNLGFYQS 102
           +SQ  RK    VSSKSSEA EL T EDEWL++LPDK KPLYSHSLPC+EAWL++LGFYQS
Sbjct: 38  VSQCQRKIATFVSSKSSEAGELPTAEDEWLSRLPDKNKPLYSHSLPCIEAWLRSLGFYQS 97

Query: 103 KEDRAVWLIEKPEWHAQLSLDVTDLYIRYLKSGPGNLEKDVERRFSYALSREDIENAVLG 162
           +EDRAVWLIEKP+WHAQLSLDVTDLYIRYLKSGPGNLE+DVERRFSYALSREDIENA+LG
Sbjct: 98  REDRAVWLIEKPDWHAQLSLDVTDLYIRYLKSGPGNLERDVERRFSYALSREDIENAILG 157

Query: 163 GP 165
           GP
Sbjct: 158 GP 159

[Close]

BLAST of Cla004219 vs. TrEMBL
Match: B9I521_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0012s01190g PE=4 SV=1)

HSP 1 Score: 215.7 bits (548), Expect = 4.2e-53
Identity = 105/150 (70.00%), Postives = 121/150 (80.67%), Query Frame = 1


Query: 19  TSNHPEISSNWR----PHSTKLPQLTNPISQSFRKSFAIVSSKSSEAEELSTPEDEWLNK 78
           TS HP   S +     P  +K      P+ +  R    I+S KSSEAEE+S+ EDEWL +
Sbjct: 21  TSTHPSKVSYFPSLHPPLFSKSLSCPYPLCKFLRNPKRIISLKSSEAEEISSTEDEWLQR 80

Query: 79  LPDKKKPLYSHSLPCLEAWLKNLGFYQSKEDRAVWLIEKPEWHAQLSLDVTDLYIRYLKS 138
           LPDKKKPLYSHSLPC+EAWLK+LGFYQSKEDRA+W IEKP+WHAQLSLDVTDL+IRYLK+
Sbjct: 81  LPDKKKPLYSHSLPCIEAWLKDLGFYQSKEDRAIWFIEKPDWHAQLSLDVTDLFIRYLKN 140

Query: 139 GPGNLEKDVERRFSYALSREDIENAVLGGP 165
           GPGNLEKD+ERRFSYALSREDIENA+LGGP
Sbjct: 141 GPGNLEKDMERRFSYALSREDIENAILGGP 170

[Close]

BLAST of Cla004219 vs. NCBI nr
Match: gi|659077667|ref|XP_008439322.1| (PREDICTED: uncharacterized protein LOC103484146 [Cucumis melo])

HSP 1 Score: 306.6 bits (784), Expect = 2.6e-80
Identity = 148/164 (90.24%), Postives = 154/164 (93.90%), Query Frame = 1


Query: 1   MSINFALQSLCNNVFPFPTSNHPEISSNWRPHSTKLPQLTNPISQSFRKSFAIVSSKSSE 60
           MSI FA  SLCNNVFP PTSNH EISS WRP STKLPQL+NPISQ  RK+F IVSSKSSE
Sbjct: 1   MSITFAFHSLCNNVFPSPTSNHLEISSIWRPISTKLPQLSNPISQPLRKTFTIVSSKSSE 60

Query: 61  AEELSTPEDEWLNKLPDKKKPLYSHSLPCLEAWLKNLGFYQSKEDRAVWLIEKPEWHAQL 120
           AEELS+PEDEWLNKLP+KKKPLYSHSLPC+EAWLKNLGFYQSKEDRA+WLIEKPEWHAQL
Sbjct: 61  AEELSSPEDEWLNKLPEKKKPLYSHSLPCVEAWLKNLGFYQSKEDRAMWLIEKPEWHAQL 120

Query: 121 SLDVTDLYIRYLKSGPGNLEKDVERRFSYALSREDIENAVLGGP 165
           SLDVTDLYIRYLKSGPGNLEKDVERRFSYALSREDIENAVLGGP
Sbjct: 121 SLDVTDLYIRYLKSGPGNLEKDVERRFSYALSREDIENAVLGGP 164

[Close]

BLAST of Cla004219 vs. NCBI nr
Match: gi|778680932|ref|XP_011651422.1| (PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC101209888, partial [Cucumis sativus])

HSP 1 Score: 281.6 bits (719), Expect = 9.0e-73
Identity = 138/157 (87.90%), Postives = 146/157 (92.99%), Query Frame = 1


Query: 9   SLCNNVFPFPTSNHPEISSNWRPHSTKLPQLTNPISQSFRKSFAIVSSKSSEAEE-LSTP 68
           ++CNNVFP PTSNH EISS WRP STKLPQ +NPISQS R SF IVSSKSSEAEE LS+P
Sbjct: 11  NVCNNVFPSPTSNHLEISSIWRPISTKLPQSSNPISQSLRNSFTIVSSKSSEAEEELSSP 70

Query: 69  EDEWLNKLPDKKKPLYSHSLPCLEAWLKNLGFYQSKEDRAVWLIEKPEWHAQLSLDVTDL 128
           EDE LNKLP+KKKPLYSHSLPC+EAWLKNLGFYQSK+D AVWLIEKPEWHAQLSLDVTDL
Sbjct: 71  EDECLNKLPEKKKPLYSHSLPCVEAWLKNLGFYQSKKDXAVWLIEKPEWHAQLSLDVTDL 130

Query: 129 YIRYLKSGPGNLEKDVERRFSYALSREDIENAVLGGP 165
           Y+RYLKSGPGNLEKDVERRFSYALSREDIENAVLGGP
Sbjct: 131 YVRYLKSGPGNLEKDVERRFSYALSREDIENAVLGGP 167

[Close]

BLAST of Cla004219 vs. NCBI nr
Match: gi|1009182166|ref|XP_015872562.1| (PREDICTED: uncharacterized protein LOC107409651, partial [Ziziphus jujuba])

HSP 1 Score: 231.5 bits (589), Expect = 1.1e-57
Identity = 116/148 (78.38%), Postives = 126/148 (85.14%), Query Frame = 1


Query: 17  FPTSNHPEISSNWRPHSTKLPQLTNPISQSFRKSFAIVSSKSSEAEELSTPEDEWLNKLP 76
           FPT   P + SN+       P  ++P+S S RKS   VSSKSSEAEELS PEDEWL KLP
Sbjct: 13  FPTP-FPSLLSNF-------PSWSHPLSLSARKSCISVSSKSSEAEELSPPEDEWLQKLP 72

Query: 77  DKKKPLYSHSLPCLEAWLKNLGFYQSKEDRAVWLIEKPEWHAQLSLDVTDLYIRYLKSGP 136
           DKKKPLYSHSLPC+EAWL +LGFYQSK+DRAVWL+EKP+WHAQLSLDVTDLYIRYLKSGP
Sbjct: 73  DKKKPLYSHSLPCIEAWLGSLGFYQSKDDRAVWLVEKPDWHAQLSLDVTDLYIRYLKSGP 132

Query: 137 GNLEKDVERRFSYALSREDIENAVLGGP 165
           GNLEKDVERRFSYALSREDIENAVLGGP
Sbjct: 133 GNLEKDVERRFSYALSREDIENAVLGGP 152

[Close]

BLAST of Cla004219 vs. NCBI nr
Match: gi|1009173970|ref|XP_015868102.1| (PREDICTED: uncharacterized protein LOC107405548 isoform X1 [Ziziphus jujuba])

HSP 1 Score: 231.5 bits (589), Expect = 1.1e-57
Identity = 116/148 (78.38%), Postives = 126/148 (85.14%), Query Frame = 1


Query: 17  FPTSNHPEISSNWRPHSTKLPQLTNPISQSFRKSFAIVSSKSSEAEELSTPEDEWLNKLP 76
           FPT   P + SN+       P  ++P+S S RKS   VSSKSSEAEELS PEDEWL KLP
Sbjct: 29  FPTP-FPSLLSNF-------PSWSHPLSLSARKSCISVSSKSSEAEELSPPEDEWLQKLP 88

Query: 77  DKKKPLYSHSLPCLEAWLKNLGFYQSKEDRAVWLIEKPEWHAQLSLDVTDLYIRYLKSGP 136
           DKKKPLYSHSLPC+EAWL +LGFYQSK+DRAVWL+EKP+WHAQLSLDVTDLYIRYLKSGP
Sbjct: 89  DKKKPLYSHSLPCIEAWLGSLGFYQSKDDRAVWLVEKPDWHAQLSLDVTDLYIRYLKSGP 148

Query: 137 GNLEKDVERRFSYALSREDIENAVLGGP 165
           GNLEKDVERRFSYALSREDIENAVLGGP
Sbjct: 149 GNLEKDVERRFSYALSREDIENAVLGGP 168

[Close]

BLAST of Cla004219 vs. NCBI nr
Match: gi|703104000|ref|XP_010097881.1| (hypothetical protein L484_011480 [Morus notabilis])

HSP 1 Score: 223.8 bits (569), Expect = 2.2e-55
Identity = 112/158 (70.89%), Postives = 126/158 (79.75%), Query Frame = 1


Query: 12  NNVFPFPTSNH-----PEISSNWRPHSTKLPQLTNPISQSFRKSFAIVSSKSSEAEELST 71
           +N+  F +S+      PE  +     S K P    P+++  RK      SKSSEAEELS+
Sbjct: 12  SNILSFTSSSSIPSKVPESPALSPSISRKFPAFCKPLARPPRKLHLRSRSKSSEAEELSS 71

Query: 72  PEDEWLNKLPDKKKPLYSHSLPCLEAWLKNLGFYQSKEDRAVWLIEKPEWHAQLSLDVTD 131
           PEDEWL KLPDKKKPLYSHSLPC+EAWL++LGFYQSKEDRAVWL+EK +WHAQLSLDVTD
Sbjct: 72  PEDEWLKKLPDKKKPLYSHSLPCIEAWLRSLGFYQSKEDRAVWLVEKADWHAQLSLDVTD 131

Query: 132 LYIRYLKSGPGNLEKDVERRFSYALSREDIENAVLGGP 165
           LYIRYLKSGPGNLEKDVERRFSYALSREDIENAVLGGP
Sbjct: 132 LYIRYLKSGPGNLEKDVERRFSYALSREDIENAVLGGP 169

The following BLAST results are available for this feature:

BLAST of Cla004219 vs. TrEMBL


Match Name	E-value	Identity	Description
W9RU92_9ROSA	1.5e-55	70.89	Uncharacterized protein OS=Morus notabilis GN=L484_011480 PE=4 SV=1	[more]
M5X0W9_PRUPE	7.7e-55	71.07	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012623mg PE=4 SV=1	[more]
A0A061G0N6_THECC	8.5e-54	84.43	Uncharacterized protein OS=Theobroma cacao GN=TCM_015318 PE=4 SV=1	[more]
A0A0D2PAE3_GOSRA	2.5e-53	83.61	Uncharacterized protein OS=Gossypium raimondii GN=B456_004G116000 PE=4 SV=1	[more]
B9I521_POPTR	4.2e-53	70.00	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0012s01190g PE=4 SV=1	[more]

BLAST of Cla004219 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659077667\|ref\|XP_008439322.1\|	2.6e-80	90.24	PREDICTED: uncharacterized protein LOC103484146 [Cucumis melo]	[more]
gi\|778680932\|ref\|XP_011651422.1\|	9.0e-73	87.90	PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC101209888, partial [C...	[more]
gi\|1009182166\|ref\|XP_015872562.1\|	1.1e-57	78.38	PREDICTED: uncharacterized protein LOC107409651, partial [Ziziphus jujuba]	[more]
gi\|1009173970\|ref\|XP_015868102.1\|	1.1e-57	78.38	PREDICTED: uncharacterized protein LOC107405548 isoform X1 [Ziziphus jujuba]	[more]
gi\|703104000\|ref\|XP_010097881.1\|	2.2e-55	70.89	hypothetical protein L484_011480 [Morus notabilis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR021489	DUF3143

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009073	aromatic amino acid family biosynthetic process
biological_process	GO:0016226	iron-sulfur cluster assembly
biological_process	GO:0010207	photosystem II assembly
biological_process	GO:0045893	positive regulation of transcription, DNA-templated
biological_process	GO:0008152	metabolic process
biological_process	GO:0009058	biosynthetic process
biological_process	GO:0044237	cellular metabolic process
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0016740	transferase activity
molecular_function	GO:0003674	molecular_function

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
WMU36100	watermelon unigene v2 vs TrEMBL	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla004219	Cla004219.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
WMU36100	WMU36100	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR021489	Protein of unknown function DUF3143	PFAM	PF11341	DUF3143	coord: 97..163 score: 3.3
None	No IPR available	PANTHER	PTHR35765	FAMILY NOT NAMED	coord: 25..164 score: 3.3
None	No IPR available	PANTHER	PTHR35765:SF2	SUBFAMILY NOT NAMED	coord: 25..164 score: 3.3

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla004219	Cla97C05G090740	Watermelon (97103) v2	wmwmbB206
Cla004219	MELO3C006968	Melon (DHL92) v3.5.1	mewmB461
Cla004219	Cucsa.012810	Cucumber (Gy14) v1	cgywmB366
Cla004219	CmaCh16G000840	Cucurbita maxima (Rimu)	cmawmB316
Cla004219	CmoCh16G000870	Cucurbita moschata (Rifu)	cmowmB310
Cla004219	Lsi05G011700	Bottle gourd (USVL1VR-Ls)	lsiwmB366
Cla004219	Cp4.1LG14g06340	Cucurbita pepo (Zucchini)	cpewmB227
Cla004219	MELO3C006968.2	Melon (DHL92) v3.6.1	medwmB447
Cla004219	Carg15092	Silver-seed gourd	carwmB0990
Cla004219	Bhi01G001058	Wax gourd	wgowmB202

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla004219	Silver-seed gourd	carwmB0488
Cla004219	Silver-seed gourd	carwmB0503
Cla004219	Silver-seed gourd	carwmB0536
Cla004219	Cucumber (Chinese Long) v3	cucwmB241
Cla004219	Cucumber (Chinese Long) v3	cucwmB260
Cla004219	Cucumber (Chinese Long) v3	cucwmB335
Cla004219	Cucumber (Chinese Long) v3	cucwmB429
Cla004219	Cucumber (Chinese Long) v3	cucwmB430
Cla004219	Watermelon (97103) v2	wmwmbB192
Cla004219	Watermelon (97103) v2	wmwmbB210
Cla004219	Wax gourd	wgowmB063
Cla004219	Watermelon (97103) v1	wmwmB118
Cla004219	Watermelon (97103) v1	wmwmB125
Cla004219	Cucumber (Gy14) v1	cgywmB397
Cla004219	Cucumber (Gy14) v1	cgywmB477
Cla004219	Cucumber (Gy14) v1	cgywmB549
Cla004219	Cucurbita maxima (Rimu)	cmawmB269
Cla004219	Cucurbita maxima (Rimu)	cmawmB373
Cla004219	Cucurbita maxima (Rimu)	cmawmB564
Cla004219	Cucurbita moschata (Rifu)	cmowmB228
Cla004219	Cucurbita moschata (Rifu)	cmowmB260
Cla004219	Cucurbita moschata (Rifu)	cmowmB366
Cla004219	Cucurbita moschata (Rifu)	cmowmB558
Cla004219	Melon (DHL92) v3.5.1	mewmB018
Cla004219	Melon (DHL92) v3.5.1	mewmB466
Cla004219	Watermelon (Charleston Gray)	wcgwmB136
Cla004219	Watermelon (Charleston Gray)	wcgwmB286
Cla004219	Watermelon (Charleston Gray)	wcgwmB290
Cla004219	Cucumber (Chinese Long) v2	cuwmB249
Cla004219	Cucumber (Chinese Long) v2	cuwmB252
Cla004219	Cucumber (Chinese Long) v2	cuwmB402
Cla004219	Cucumber (Chinese Long) v2	cuwmB407
Cla004219	Cucurbita pepo (Zucchini)	cpewmB032
Cla004219	Cucurbita pepo (Zucchini)	cpewmB179
Cla004219	Cucurbita pepo (Zucchini)	cpewmB612
Cla004219	Cucurbita pepo (Zucchini)	cpewmB705
Cla004219	Bottle gourd (USVL1VR-Ls)	lsiwmB023
Cla004219	Bottle gourd (USVL1VR-Ls)	lsiwmB361
Cla004219	Bottle gourd (USVL1VR-Ls)	lsiwmB364
Cla004219	Cucumber (Gy14) v2	cgybwmB219
Cla004219	Cucumber (Gy14) v2	cgybwmB238
Cla004219	Cucumber (Gy14) v2	cgybwmB379
Cla004219	Cucumber (Gy14) v2	cgybwmB378
Cla004219	Melon (DHL92) v3.6.1	medwmB014
Cla004219	Melon (DHL92) v3.6.1	medwmB456