WMU36100 (transcribed_cluster) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	WMU36100
Type	transcribed_cluster
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	tRNA dimethylallyltransferase
Location	Chr5 : 8822868 .. 8825032 (+)
Sequence length	630

Genome Viewer

Sequences

The following sequences are available for this feature:

transcribed_cluster sequence

GGGGATCAATTTTGCTCTTCAGTCTCTCTGTAACAATGTTTTCCCATTTCCAACTTCAAAATCATCCCCGAAATTTCATCGAATTGGCGTCCCCATTCCACTAAAACTCCCACAATTAACCAACCCCATCTCTCAATCCTTCAGAAAAAAGCTTCGCCATTGTTTCTTCCAAGTCGTCCGAAGCAGAAGAGCTCTCTACTCCAGAGGACGAGTGGCTGAACAAGCTTCCAGACAAGAAGAAGCCCTTGTACTCACACAGTTTGCCTTGCCTCGAGGCTTGGTTAAAGAACTTGGGATTTTACCAGAGTAAAGAGGACCGAGCTGTGTGGCTAATCGAGAAGCCTGAATGGCACGCTCAGCTCTCACTCGATGTCACCGACCTCTATATAAGATATCTAAAGAGTGGACCAGGAATCTTGAGAAAGATGTGGAGAGGAGATTTAGCTATGCACTAAGCAGAGAAGATATTGAGAATGCTGTACTTGGAGGACCTTGAACACAATTTATCATTACTCACTGTTTTGCAATCATTCCTTTCTGTCAATAAATATAACATAATTTCTTGATCTATTTTCTTCCCATTCCACAATTGGTTGAAATGAAATCCACTTTTTGCTCAACTAAAAAAAA

Library


Library category	ESTs
watermelon fruit 10d library	2
watermelon fruit 18d library	3
watermelon fruit 26d library	1
watermelon fruit 34d library	17

Homology

[Close]

BLAST of WMU36100 vs. TAIR10
Match: AT5G52960.1 (AT5G52960.1 unknown protein)

HSP 1 Score: 157.1 bits (396), Expect = 1.1e-38
Identity = 71/93 (76.34%), Postives = 80/93 (86.02%), Query Frame = 3


Query: 147 KSFAIVSSKSSEAEELSTPEDEWLNKLPDKKKPLYSHSLPCLEAWLKNLGFYQSKEDRAV 206
           K   +VSSKSS+AEE+S  EDEWL KLP+K KPLYSHSLPC+EAWL+ LGFYQSK+DRAV
Sbjct: 55  KPLTLVSSKSSDAEEVSDTEDEWLKKLPEKNKPLYSHSLPCIEAWLRKLGFYQSKDDRAV 114

Query: 207 WLIEKPEWHAQLSLDVTDLYIRYLKSGPGILRK 266
           WLI+KP+WHAQLSLDVTDL IRY+KSGPG L +
Sbjct: 115 WLIQKPDWHAQLSLDVTDLCIRYMKSGPGNLER 147

Query: 267  326
           
Sbjct: 175  147

Query: 327  386
           
Sbjct: 235  147

Query: 387  426
           
Sbjct: 295  147

HSP 2 Score: 52.4 bits (124), Expect = 4.0e-07
Identity = 23/27 (85.19%), Postives = 24/27 (88.89%), Query Frame = 2


Query: 413 NLEKDVERRFSYALSREDIENAVLGGP 472
           NLE+D+ERRFSYALSRED ENA+LGGP
Sbjct: 144 NLERDMERRFSYALSREDTENAILGGP 170

Query: 473  494
           
Sbjct: 204  170

[Close]

BLAST of WMU36100 vs. TrEMBL
Match: B9I521_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0012s01190g PE=4 SV=1)

HSP 1 Score: 169.9 bits (429), Expect = 3.4e-39
Identity = 85/143 (59.44%), Postives = 101/143 (70.63%), Query Frame = 3


Query: 6   SILLFSLSVTMFSHFQLQNHPRN---FIELASPFH*NSHN*PTPSLNPSEKSFAIVSSKS 65
           S +L + ++ + SH     HP     F  L  P    S + P P          I+S KS
Sbjct: 5   SSILTTTNILLSSHPSTSTHPSKVSYFPSLHPPLFSKSLSCPYPLCKFLRNPKRIISLKS 64

Query: 66  SEAEELSTPEDEWLNKLPDKKKPLYSHSLPCLEAWLKNLGFYQSKEDRAVWLIEKPEWHA 125
           SEAEE+S+ EDEWL +LPDKKKPLYSHSLPC+EAWLK+LGFYQSKEDRA+W IEKP+WHA
Sbjct: 65  SEAEEISSTEDEWLQRLPDKKKPLYSHSLPCIEAWLKDLGFYQSKEDRAIWFIEKPDWHA 124

Query: 126 QLSLDVTDLYIRYLKSGPGILRK 185
           QLSLDVTDL+IRYLK+GPG L K
Sbjct: 125 QLSLDVTDLFIRYLKNGPGNLEK 147

Query: 186  245
           
Sbjct: 185  147

Query: 246  305
           
Sbjct: 245  147

Query: 306  365
           
Sbjct: 305  147

Query: 366  425
           
Sbjct: 365  147

[Close]

BLAST of WMU36100 vs. TrEMBL
Match: B9I521_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0012s01190g PE=4 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 9.3e-05
Identity = 25/27 (92.59%), Postives = 27/27 (100.00%), Query Frame = 2


Query: 413 NLEKDVERRFSYALSREDIENAVLGGP 472
           NLEKD+ERRFSYALSREDIENA+LGGP
Sbjct: 144 NLEKDMERRFSYALSREDIENAILGGP 170

Query: 473  494
           
Sbjct: 204  170

HSP 2 Score: 167.9 bits (424), Expect = 1.3e-38
Identity = 79/100 (79.00%), Postives = 85/100 (85.00%), Query Frame = 3


Query: 126 PSLNPSEKSFAIVSSKSSEAEELSTPEDEWLNKLPDKKKPLYSHSLPCLEAWLKNLGFYQ 185
           P   P  K      SKSSEAEELS+PEDEWL KLPDKKKPLYSHSLPC+EAWL++LGFYQ
Sbjct: 47  PLARPPRKLHLRSRSKSSEAEELSSPEDEWLKKLPDKKKPLYSHSLPCIEAWLRSLGFYQ 106

Query: 186 SKEDRAVWLIEKPEWHAQLSLDVTDLYIRYLKSGPGILRK 245
           SKEDRAVWL+EK +WHAQLSLDVTDLYIRYLKSGPG L K
Sbjct: 107 SKEDRAVWLVEKADWHAQLSLDVTDLYIRYLKSGPGNLEK 146

Query: 246  305
           
Sbjct: 167  146

Query: 306  365
           
Sbjct: 227  146

Query: 366  425
           
Sbjct: 287  146

[Close]

BLAST of WMU36100 vs. TrEMBL
Match: W9RU92_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_011480 PE=4 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 3.2e-05
Identity = 27/27 (100.00%), Postives = 27/27 (100.00%), Query Frame = 2


Query: 413 NLEKDVERRFSYALSREDIENAVLGGP 472
           NLEKDVERRFSYALSREDIENAVLGGP
Sbjct: 143 NLEKDVERRFSYALSREDIENAVLGGP 169

Query: 473  494
           
Sbjct: 203  169

HSP 2 Score: 164.5 bits (415), Expect = 1.4e-37
Identity = 79/103 (76.70%), Postives = 86/103 (83.50%), Query Frame = 3


Query: 120 PTPSLNPSEKSFAIVSSKSSEAEE-LSTPEDEWLNKLPDKKKPLYSHSLPCLEAWLKNLG 179
           P P  + S K    V SK SEAEE LS PEDEWL +LPDKKKPLYSHSLPC+EAWL+NLG
Sbjct: 36  PYPLTHSSRKLSVPVFSKPSEAEEELSAPEDEWLKRLPDKKKPLYSHSLPCIEAWLRNLG 95

Query: 180 FYQSKEDRAVWLIEKPEWHAQLSLDVTDLYIRYLKSGPGILRK 239
           FYQSKEDRAVWL+EKPEW AQLSLDVTDLY+RYLK+GPG L K
Sbjct: 96  FYQSKEDRAVWLVEKPEWQAQLSLDVTDLYVRYLKTGPGNLEK 138

Query: 240  299
           
Sbjct: 156  138

Query: 300  359
           
Sbjct: 216  138

Query: 360  419
           
Sbjct: 276  138

Query: 420  426
           
Sbjct: 336  138

[Close]

BLAST of WMU36100 vs. TrEMBL
Match: M5X0W9_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012623mg PE=4 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 3.2e-05
Identity = 27/27 (100.00%), Postives = 27/27 (100.00%), Query Frame = 2


Query: 413 NLEKDVERRFSYALSREDIENAVLGGP 472
           NLEKDVERRFSYALSREDIENAVLGGP
Sbjct: 135 NLEKDVERRFSYALSREDIENAVLGGP 161

Query: 473  494
           
Sbjct: 195  161

HSP 2 Score: 163.7 bits (413), Expect = 2.4e-37
Identity = 76/93 (81.72%), Postives = 83/93 (89.25%), Query Frame = 3


Query: 147 KSFAIVSSKSSEAEELSTPEDEWLNKLPDKKKPLYSHSLPCLEAWLKNLGFYQSKEDRAV 206
           KS  +VSSKSSEAEE+S  EDEWL KLP+K KPLYSHSLPC+EAWLK LGFYQSKEDRAV
Sbjct: 49  KSLTLVSSKSSEAEEVSETEDEWLKKLPEKNKPLYSHSLPCIEAWLKKLGFYQSKEDRAV 108

Query: 207 WLIEKPEWHAQLSLDVTDLYIRYLKSGPGILRK 266
           WLI+KP+WHAQLSLDVTDL IRYLKSGPG L +
Sbjct: 109 WLIQKPDWHAQLSLDVTDLCIRYLKSGPGSLER 141

Query: 267  326
           
Sbjct: 169  141

Query: 327  386
           
Sbjct: 229  141

Query: 387  426
           
Sbjct: 289  141

[Close]

BLAST of WMU36100 vs. TrEMBL
Match: A0A087GAJ2_ARAAL (Uncharacterized protein OS=Arabis alpina GN=AALP_AA8G307400 PE=4 SV=1)

HSP 1 Score: 50.4 bits (119), Expect = 3.0e-03
Identity = 22/27 (81.48%), Postives = 26/27 (96.30%), Query Frame = 2


Query: 413 NLEKDVERRFSYALSREDIENAVLGGP 472
           +LE+D+ERRFSYALSRED ENA+LGGP
Sbjct: 138 SLERDMERRFSYALSREDTENAILGGP 164

Query: 473  494
           
Sbjct: 198  164

HSP 2 Score: 163.3 bits (412), Expect = 3.2e-37
Identity = 76/93 (81.72%), Postives = 83/93 (89.25%), Query Frame = 3


Query: 147 KSFAIVSSKSSEAEELSTPEDEWLNKLPDKKKPLYSHSLPCLEAWLKNLGFYQSKEDRAV 206
           K    VSSKSSEAEEL T EDEWLN+LPDK KPLYSHSLPC+EAWL++LGF QS+EDRAV
Sbjct: 50  KIVTFVSSKSSEAEELPTAEDEWLNRLPDKNKPLYSHSLPCIEAWLRSLGFCQSREDRAV 109

Query: 207 WLIEKPEWHAQLSLDVTDLYIRYLKSGPGILRK 266
           WLIEKP+WHAQLSLDVTDLYIRYLKSGPG L +
Sbjct: 110 WLIEKPDWHAQLSLDVTDLYIRYLKSGPGNLER 142

Query: 267  326
           
Sbjct: 170  142

Query: 327  386
           
Sbjct: 230  142

Query: 387  426
           
Sbjct: 290  142

[Close]

BLAST of WMU36100 vs. NCBI nr
Match: gi|659077667|ref|XP_008439322.1| (PREDICTED: uncharacterized protein LOC103484146 [Cucumis melo])

HSP 1 Score: 186.0 bits (471), Expect = 6.5e-44
Identity = 92/121 (76.03%), Postives = 101/121 (83.47%), Query Frame = 3


Query: 72  NFIELASPFH*NSHN*P---TPSLNPSEKSFAIVSSKSSEAEELSTPEDEWLNKLPDKKK 131
           N +E++S +   S   P    P   P  K+F IVSSKSSEAEELS+PEDEWLNKLP+KKK
Sbjct: 21  NHLEISSIWRPISTKLPQLSNPISQPLRKTFTIVSSKSSEAEELSSPEDEWLNKLPEKKK 80

Query: 132 PLYSHSLPCLEAWLKNLGFYQSKEDRAVWLIEKPEWHAQLSLDVTDLYIRYLKSGPGILR 191
           PLYSHSLPC+EAWLKNLGFYQSKEDRA+WLIEKPEWHAQLSLDVTDLYIRYLKSGPG L 
Sbjct: 81  PLYSHSLPCVEAWLKNLGFYQSKEDRAMWLIEKPEWHAQLSLDVTDLYIRYLKSGPGNLE 140

Query: 192 K 251
           K
Sbjct: 141 K 141

Query: 252  311
           
Sbjct: 201  141

Query: 312  371
           
Sbjct: 261  141

Query: 372  426
           
Sbjct: 321  141

[Close]

BLAST of WMU36100 vs. NCBI nr
Match: gi|743915958|ref|XP_011001945.1| (PREDICTED: uncharacterized protein LOC105109055 [Populus euphratica])

HSP 1 Score: 174.5 bits (441), Expect = 2.0e-40
Identity = 88/143 (61.54%), Postives = 103/143 (72.03%), Query Frame = 3


Query: 6   SILLFSLSVTMFSHFQLQNHPRN---FIELASPFH*NSHN*PTPSLNPSEKSFAIVSSKS 65
           S +L + ++ + SH     HP     F  L  P    S + P P  N       IVSSKS
Sbjct: 5   SSILTTTNILLSSHPSTSTHPSKVSFFPSLHPPLFSKSLSCPYPLCNFLRNPKRIVSSKS 64

Query: 66  SEAEELSTPEDEWLNKLPDKKKPLYSHSLPCLEAWLKNLGFYQSKEDRAVWLIEKPEWHA 125
           SEAEE+S+ EDEWL +LPDKKKPLYSHSLPC+EAWLK+LGFYQSKEDRA+W IEKP+WHA
Sbjct: 65  SEAEEISSTEDEWLQRLPDKKKPLYSHSLPCIEAWLKDLGFYQSKEDRAIWFIEKPDWHA 124

Query: 126 QLSLDVTDLYIRYLKSGPGILRK 185
           QLSLDVTDL+IRYLK+GPG L K
Sbjct: 125 QLSLDVTDLFIRYLKNGPGNLEK 147

Query: 186  245
           
Sbjct: 185  147

Query: 246  305
           
Sbjct: 245  147

Query: 306  365
           
Sbjct: 305  147

Query: 366  425
           
Sbjct: 365  147

[Close]

BLAST of WMU36100 vs. NCBI nr
Match: gi|1009173970|ref|XP_015868102.1| (PREDICTED: uncharacterized protein LOC107405548 isoform X1 [Ziziphus jujuba])

HSP 1 Score: 174.1 bits (440), Expect = 2.6e-40
Identity = 94/140 (67.14%), Postives = 102/140 (72.86%), Query Frame = 3


Query: 6   SILLFSLSVTMFSHFQLQNHPRNFIELASPFH*NSHN*PTPSLNPSEKSFAIVSSKSSEA 65
           SI +FS S T  +       P  F  L S F   SH    P    + KS   VSSKSSEA
Sbjct: 11  SIDIFS-STTSLTPQNCPKFPTPFPSLLSNFPSWSH----PLSLSARKSCISVSSKSSEA 70

Query: 66  EELSTPEDEWLNKLPDKKKPLYSHSLPCLEAWLKNLGFYQSKEDRAVWLIEKPEWHAQLS 125
           EELS PEDEWL KLPDKKKPLYSHSLPC+EAWL +LGFYQSK+DRAVWL+EKP+WHAQLS
Sbjct: 71  EELSPPEDEWLQKLPDKKKPLYSHSLPCIEAWLGSLGFYQSKDDRAVWLVEKPDWHAQLS 130

Query: 126 LDVTDLYIRYLKSGPGILRK 185
           LDVTDLYIRYLKSGPG L K
Sbjct: 131 LDVTDLYIRYLKSGPGNLEK 145

Query: 186  245
           
Sbjct: 191  145

Query: 246  305
           
Sbjct: 251  145

Query: 306  365
           
Sbjct: 311  145

Query: 366  425
           
Sbjct: 371  145

[Close]

BLAST of WMU36100 vs. NCBI nr
Match: gi|1009182166|ref|XP_015872562.1| (PREDICTED: uncharacterized protein LOC107409651, partial [Ziziphus jujuba])

HSP 1 Score: 173.7 bits (439), Expect = 3.4e-40
Identity = 87/123 (70.73%), Postives = 97/123 (78.86%), Query Frame = 3


Query: 66  PRNFIELASPFH*NSHN*PT---PSLNPSEKSFAIVSSKSSEAEELSTPEDEWLNKLPDK 125
           P+N  +  +PF     N P+   P    + KS   VSSKSSEAEELS PEDEWL KLPDK
Sbjct: 7   PQNCPKFPTPFPSLLSNFPSWSHPLSLSARKSCISVSSKSSEAEELSPPEDEWLQKLPDK 66

Query: 126 KKPLYSHSLPCLEAWLKNLGFYQSKEDRAVWLIEKPEWHAQLSLDVTDLYIRYLKSGPGI 185
           KKPLYSHSLPC+EAWL +LGFYQSK+DRAVWL+EKP+WHAQLSLDVTDLYIRYLKSGPG 
Sbjct: 67  KKPLYSHSLPCIEAWLGSLGFYQSKDDRAVWLVEKPDWHAQLSLDVTDLYIRYLKSGPGN 126

Query: 186 LRK 245
           L K
Sbjct: 127 LEK 129

Query: 246  305
           
Sbjct: 187  129

Query: 306  365
           
Sbjct: 247  129

Query: 366  425
           
Sbjct: 307  129

[Close]

BLAST of WMU36100 vs. NCBI nr
Match: gi|224118136|ref|XP_002317740.1| (hypothetical protein POPTR_0012s01190g [Populus trichocarpa])

HSP 1 Score: 169.5 bits (428), Expect = 6.3e-39
Identity = 85/143 (59.44%), Postives = 101/143 (70.63%), Query Frame = 3


Query: 6   SILLFSLSVTMFSHFQLQNHPRN---FIELASPFH*NSHN*PTPSLNPSEKSFAIVSSKS 65
           S +L + ++ + SH     HP     F  L  P    S + P P          I+S KS
Sbjct: 5   SSILTTTNILLSSHPSTSTHPSKVSYFPSLHPPLFSKSLSCPYPLCKFLRNPKRIISLKS 64

Query: 66  SEAEELSTPEDEWLNKLPDKKKPLYSHSLPCLEAWLKNLGFYQSKEDRAVWLIEKPEWHA 125
           SEAEE+S+ EDEWL +LPDKKKPLYSHSLPC+EAWLK+LGFYQSKEDRA+W IEKP+WHA
Sbjct: 65  SEAEEISSTEDEWLQRLPDKKKPLYSHSLPCIEAWLKDLGFYQSKEDRAIWFIEKPDWHA 124

Query: 126 QLSLDVTDLYIRYLKSGPGILRK 185
           QLSLDVTDL+IRYLK+GPG L K
Sbjct: 125 QLSLDVTDLFIRYLKNGPGNLEK 147

Query: 186  245
           
Sbjct: 185  147

Query: 246  305
           
Sbjct: 245  147

Query: 306  365
           
Sbjct: 305  147

Query: 366  425
           
Sbjct: 365  147

The following BLAST results are available for this feature:

BLAST of WMU36100 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G52960.1	1.1e-38	76.34	unknown protein	[more]

BLAST of WMU36100 vs. TrEMBL


Match Name	E-value	Identity	Description
B9I521_POPTR	3.4e-39	59.44	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0012s01190g PE=4 SV=1	[more]
B9I521_POPTR	9.3e-05	92.59	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0012s01190g PE=4 SV=1	[more]
W9RU92_9ROSA	3.2e-05	100.00	Uncharacterized protein OS=Morus notabilis GN=L484_011480 PE=4 SV=1	[more]
M5X0W9_PRUPE	3.2e-05	100.00	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012623mg PE=4 SV=1	[more]
A0A087GAJ2_ARAAL	3.0e-03	81.48	Uncharacterized protein OS=Arabis alpina GN=AALP_AA8G307400 PE=4 SV=1	[more]

BLAST of WMU36100 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659077667\|ref\|XP_008439322.1\|	6.5e-44	76.03	PREDICTED: uncharacterized protein LOC103484146 [Cucumis melo]	[more]
gi\|743915958\|ref\|XP_011001945.1\|	2.0e-40	61.54	PREDICTED: uncharacterized protein LOC105109055 [Populus euphratica]	[more]
gi\|1009173970\|ref\|XP_015868102.1\|	2.6e-40	67.14	PREDICTED: uncharacterized protein LOC107405548 isoform X1 [Ziziphus jujuba]	[more]
gi\|1009182166\|ref\|XP_015872562.1\|	3.4e-40	70.73	PREDICTED: uncharacterized protein LOC107409651, partial [Ziziphus jujuba]	[more]
gi\|224118136\|ref\|XP_002317740.1\|	6.3e-39	59.44	hypothetical protein POPTR_0012s01190g [Populus trichocarpa]	[more]

Annotated Terms

The following terms have been associated with this transcribed_cluster:

Vocabulary: **INTERPRO**
Term	Definition
IPR021489	DUF3143

Relationships

This transcribed_cluster is associated with the following gene feature(s):


Feature Name	Unique Name	Type
Cla004219	Cla004219	gene

The following EST feature(s) are a part of this transcribed_cluster:


Feature Name	Unique Name	Type
S1_0113779	S1_0113779	EST
S1_0124399	S1_0124399	EST
S2_0070036	S2_0070036	EST
S2_0140345	S2_0140345	EST
S2_0182069	S2_0182069	EST
S3_0124746	S3_0124746	EST
S4_0120917	S4_0120917	EST
S4_0133118	S4_0133118	EST
S4_0137251	S4_0137251	EST
S4_0143488	S4_0143488	EST
S4_0145280	S4_0145280	EST
S4_0147198	S4_0147198	EST
S4_0149226	S4_0149226	EST
S4_0152854	S4_0152854	EST
S4_0157368	S4_0157368	EST
S4_0157504	S4_0157504	EST
S4_0157912	S4_0157912	EST
S4_0160187	S4_0160187	EST
S4_0163331	S4_0163331	EST
S4_0169379	S4_0169379	EST
S4_0172890	S4_0172890	EST
S4_0176150	S4_0176150	EST
S4_0177202	S4_0177202	EST

InterPro

Analysis Name: InterPro Annotations of watermelon unigene v2
Date Performed: 2016-11-16


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR021489	Protein of unknown function DUF3143	PFAM	PF11341	DUF3143	coord: 98..164 score: 3.6
None	No IPR available	PANTHER	PTHR35765	FAMILY NOT NAMED	coord: 32..165 score: 3.3
None	No IPR available	PANTHER	PTHR35765:SF2	SUBFAMILY NOT NAMED	coord: 32..165 score: 3.3