Cla004219.1 (mRNA) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla004219
Type	mRNA
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Unknown Protein (AHRD V1)
Location	Chr5 : 8822862 .. 8824908 (+)
Sequence length	495

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCCATCAATTTTGCTCTTCAGTCTCTCTGTAACAATGTTTTCCCATTTCCAACTTCAAATCATCCCGAAATTTCATCGAATTGGCGTCCCCATTCCACTAAACTCCCACAATTAACCAACCCCATCTCTCAATCCTTCAGAAAAAGCTTCGCCATTGTTTCTTCCAAGTCGTCCGAAGCAGAAGAGCTCTCTACTCCAGAGGACGAGTGGCTGAACAAGCTTCCAGACAAGAAGAAGCCCTTGTACTCACACAGTTTGCCTTGCCTCGAGGCTTGGTTAAAGAACTTGGGATTTTACCAGAGTAAAGAGGACCGAGCTGTGTGGCTAATCGAGAAGCCTGAATGGCACGCTCAGCTCTCACTCGATGTCACCGACCTCTATATAAGGTTTGCAATAAGGCCCTTTTTCTTTTTTTTGTGATTTTATGATAAGGATTTGTGTTTCTCAATCTGGGTTTCTGTTGTTTATCGTTTAATTGCATTTTTCTGATTAGGGTTACTTCGTGAGTTGCATTGGGGATGAATCGTTTAGTGTTGTTTCACATCTTACTTTCTTACTTCGAAACAAACATTAGTTTTAGAATTTTTGTTGGAATTTCCTTTTCTCAAGATTGCTCTTTGGGTTGTTTAACGTGTGTAAGAAATTAAGGGAGTTGAATTCAGGCAGGGCATTTGGACTCTGGGGTTGTGTTCATTCAAGCAAGCATCTATATGCCAACTGCTTCTTTTAGGTTGTTTAAGTGATGCATGTTTTATTTATTAAATCTCCATGGAGAAAAGAATAATGATGCCTTGCAGTTGTCTTTATTGAAACTATGGTCAAGACTCAGTTGGGAGGATGGACAGTGCTCTATTTTTTATGCTCTGGACTGGTTATAGAATAATTATAGAGAGATGGTTTTGTAAATGTTTGAAGGATATTGATTGAGCTTGTAAATTTTTGAGATGTCGAAGATGAAGTATATTTGTCCAGACTCCAGATAGAGGAAGAGAGTATGCAGTGTGTAAATTGCAAAGGTTGCTTACAATGTTTAAATGGAAACCAGATCTATTTCGGTTCTTGGCGGTCTCTATTGAAGTGTGAACTTGTTGATGATGCAATAGAACTGTTACCCATTCTTGCAAATGGAGGACTTTAGTTTAGTTCCACTGTTACATCCAGTTCAATTCATCCTTGTAGAGTAGAGGATGGTGAAGATTCTTAGGAGAGTGAAAAATATGTCAAACAAGGAAGCAGGGAGAATTTTATAGCTTGGCTGATACTGTGTCTTTTTTACACTTCATTGGGTTTTAAAATCTCTGGGGTGCTAGTAAACGTCTTGCATTGCATCAAAATGTTTAAAACAAGGAATAAACTTTCCTAATTTTTTGATAGTGAGAGTAGGAGAGAGGGCTAGCTGGTGGTGCGTTTCCTTCCAATCATGGCTTTTGAGTCTGATTATTTGTTATCAATCATTGTTAAGAATACTTTTCTTACTTACGATTTGATTGTAAAACACAACGATCACAATATAAGAGACAAGATAACCTCTCCATTATCCCGCTCAAGAGTGCTGGTAATCTCTCCCAAACATAGAACCACCGTTCTATTAAAAACACAAAACATAACAATAACAAACAGACTGCTTACAATTATACTACTGCTAGCCTAACAGCCGTTCTAACGAACATCCCTTTTCCCACTGACGAATTGCCCTGGTCAGTTCCCTTATTATCCTTTCTAGTGAATACACGATTGGGGGCTAACACATTGCCCCAACCCCTCAATCACATACACATGCATACACACGAAAATGAAAGCGGCAATGGAAAACACCTATTCTATTATTGGTTTTGTGGTGAAAATTTTCGTACTGGTTTGAATTTGATCCTTACACAATGCACATGTTTGTTTGTTTCATTTCTTTTTCTTTTTTGTTTTTTTTTTTTTTTTGGGCAGATATCTAAAGAGTGGACCAGGAAATCTTGAGAAAGATGTGGAGAGGAGATTTAGCTATGCACTAAGCAGAGAAGATATTGAGAATGCTGTACTTGGAGGACCTTGA

mRNA sequence

ATGTCCATCAATTTTGCTCTTCAGTCTCTCTGTAACAATGTTTTCCCATTTCCAACTTCAAATCATCCCGAAATTTCATCGAATTGGCGTCCCCATTCCACTAAACTCCCACAATTAACCAACCCCATCTCTCAATCCTTCAGAAAAAGCTTCGCCATTGTTTCTTCCAAGTCGTCCGAAGCAGAAGAGCTCTCTACTCCAGAGGACGAGTGGCTGAACAAGCTTCCAGACAAGAAGAAGCCCTTGTACTCACACAGTTTGCCTTGCCTCGAGGCTTGGTTAAAGAACTTGGGATTTTACCAGAGTAAAGAGGACCGAGCTGTGTGGCTAATCGAGAAGCCTGAATGGCACGCTCAGCTCTCACTCGATGTCACCGACCTCTATATAAGATATCTAAAGAGTGGACCAGGAAATCTTGAGAAAGATGTGGAGAGGAGATTTAGCTATGCACTAAGCAGAGAAGATATTGAGAATGCTGTACTTGGAGGACCTTGA

Coding sequence (CDS)

ATGTCCATCAATTTTGCTCTTCAGTCTCTCTGTAACAATGTTTTCCCATTTCCAACTTCAAATCATCCCGAAATTTCATCGAATTGGCGTCCCCATTCCACTAAACTCCCACAATTAACCAACCCCATCTCTCAATCCTTCAGAAAAAGCTTCGCCATTGTTTCTTCCAAGTCGTCCGAAGCAGAAGAGCTCTCTACTCCAGAGGACGAGTGGCTGAACAAGCTTCCAGACAAGAAGAAGCCCTTGTACTCACACAGTTTGCCTTGCCTCGAGGCTTGGTTAAAGAACTTGGGATTTTACCAGAGTAAAGAGGACCGAGCTGTGTGGCTAATCGAGAAGCCTGAATGGCACGCTCAGCTCTCACTCGATGTCACCGACCTCTATATAAGATATCTAAAGAGTGGACCAGGAAATCTTGAGAAAGATGTGGAGAGGAGATTTAGCTATGCACTAAGCAGAGAAGATATTGAGAATGCTGTACTTGGAGGACCTTGA

Protein sequence

MSINFALQSLCNNVFPFPTSNHPEISSNWRPHSTKLPQLTNPISQSFRKSFAIVSSKSSEAEELSTPEDEWLNKLPDKKKPLYSHSLPCLEAWLKNLGFYQSKEDRAVWLIEKPEWHAQLSLDVTDLYIRYLKSGPGNLEKDVERRFSYALSREDIENAVLGGP

Homology

[Close]

BLAST of Cla004219 vs. TrEMBL
Match: W9RU92_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_011480 PE=4 SV=1)

HSP 1 Score: 223.8 bits (569), Expect = 1.5e-55
Identity = 112/158 (70.89%), Postives = 126/158 (79.75%), Query Frame = 1


Query: 12  NNVFPFPTSNH-----PEISSNWRPHSTKLPQLTNPISQSFRKSFAIVSSKSSEAEELST 71
           +N+  F +S+      PE  +     S K P    P+++  RK      SKSSEAEELS+
Sbjct: 12  SNILSFTSSSSIPSKVPESPALSPSISRKFPAFCKPLARPPRKLHLRSRSKSSEAEELSS 71

Query: 72  PEDEWLNKLPDKKKPLYSHSLPCLEAWLKNLGFYQSKEDRAVWLIEKPEWHAQLSLDVTD 131
           PEDEWL KLPDKKKPLYSHSLPC+EAWL++LGFYQSKEDRAVWL+EK +WHAQLSLDVTD
Sbjct: 72  PEDEWLKKLPDKKKPLYSHSLPCIEAWLRSLGFYQSKEDRAVWLVEKADWHAQLSLDVTD 131

Query: 132 LYIRYLKSGPGNLEKDVERRFSYALSREDIENAVLGGP 165
           LYIRYLKSGPGNLEKDVERRFSYALSREDIENAVLGGP
Sbjct: 132 LYIRYLKSGPGNLEKDVERRFSYALSREDIENAVLGGP 169

[Close]

BLAST of Cla004219 vs. TrEMBL
Match: M5X0W9_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012623mg PE=4 SV=1)

HSP 1 Score: 221.5 bits (563), Expect = 7.7e-55
Identity = 113/159 (71.07%), Postives = 130/159 (81.76%), Query Frame = 1


Query: 9   SLCNNVFP-FPTSNHPEISSNWRPHSTKLPQLTN-PISQSFRKSFAIVSSKSSEAEE-LS 68
           S+ +++FP +PT           P+ + LP++T  P++ S RK    V SK SEAEE LS
Sbjct: 14  SMPSSIFPRYPT-----------PYPSLLPKITPYPLTHSSRKLSVPVFSKPSEAEEELS 73

Query: 69  TPEDEWLNKLPDKKKPLYSHSLPCLEAWLKNLGFYQSKEDRAVWLIEKPEWHAQLSLDVT 128
            PEDEWL +LPDKKKPLYSHSLPC+EAWL+NLGFYQSKEDRAVWL+EKPEW AQLSLDVT
Sbjct: 74  APEDEWLKRLPDKKKPLYSHSLPCIEAWLRNLGFYQSKEDRAVWLVEKPEWQAQLSLDVT 133

Query: 129 DLYIRYLKSGPGNLEKDVERRFSYALSREDIENAVLGGP 165
           DLY+RYLK+GPGNLEKDVERRFSYALSREDIENAVLGGP
Sbjct: 134 DLYVRYLKTGPGNLEKDVERRFSYALSREDIENAVLGGP 161

[Close]

BLAST of Cla004219 vs. TrEMBL
Match: A0A061G0N6_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_015318 PE=4 SV=1)

HSP 1 Score: 218.0 bits (554), Expect = 8.5e-54
Identity = 103/122 (84.43%), Postives = 112/122 (91.80%), Query Frame = 1


Query: 43  ISQSFRKSFAIVSSKSSEAEELSTPEDEWLNKLPDKKKPLYSHSLPCLEAWLKNLGFYQS 102
           +S S RK    VSSKSSEAEEL T EDEWLN+LPDK KPLYSHSLPC+EAWL++LGF QS
Sbjct: 44  VSHSQRKIVTFVSSKSSEAEELPTAEDEWLNRLPDKNKPLYSHSLPCIEAWLRSLGFCQS 103

Query: 103 KEDRAVWLIEKPEWHAQLSLDVTDLYIRYLKSGPGNLEKDVERRFSYALSREDIENAVLG 162
           +EDRAVWLIEKP+WHAQLSLDVTDLYIRYLKSGPGNLE+DVERRFSYALSREDIENA+LG
Sbjct: 104 REDRAVWLIEKPDWHAQLSLDVTDLYIRYLKSGPGNLERDVERRFSYALSREDIENAILG 163

Query: 163 GP 165
           GP
Sbjct: 164 GP 165

[Close]

BLAST of Cla004219 vs. TrEMBL
Match: A0A0D2PAE3_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_004G116000 PE=4 SV=1)

HSP 1 Score: 216.5 bits (550), Expect = 2.5e-53
Identity = 102/122 (83.61%), Postives = 112/122 (91.80%), Query Frame = 1


Query: 43  ISQSFRKSFAIVSSKSSEAEELSTPEDEWLNKLPDKKKPLYSHSLPCLEAWLKNLGFYQS 102
           +SQ  RK    VSSKSSEA EL T EDEWL++LPDK KPLYSHSLPC+EAWL++LGFYQS
Sbjct: 38  VSQCQRKIATFVSSKSSEAGELPTAEDEWLSRLPDKNKPLYSHSLPCIEAWLRSLGFYQS 97

Query: 103 KEDRAVWLIEKPEWHAQLSLDVTDLYIRYLKSGPGNLEKDVERRFSYALSREDIENAVLG 162
           +EDRAVWLIEKP+WHAQLSLDVTDLYIRYLKSGPGNLE+DVERRFSYALSREDIENA+LG
Sbjct: 98  REDRAVWLIEKPDWHAQLSLDVTDLYIRYLKSGPGNLERDVERRFSYALSREDIENAILG 157

Query: 163 GP 165
           GP
Sbjct: 158 GP 159

[Close]

BLAST of Cla004219 vs. TrEMBL
Match: B9I521_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0012s01190g PE=4 SV=1)

HSP 1 Score: 215.7 bits (548), Expect = 4.2e-53
Identity = 105/150 (70.00%), Postives = 121/150 (80.67%), Query Frame = 1


Query: 19  TSNHPEISSNWR----PHSTKLPQLTNPISQSFRKSFAIVSSKSSEAEELSTPEDEWLNK 78
           TS HP   S +     P  +K      P+ +  R    I+S KSSEAEE+S+ EDEWL +
Sbjct: 21  TSTHPSKVSYFPSLHPPLFSKSLSCPYPLCKFLRNPKRIISLKSSEAEEISSTEDEWLQR 80

Query: 79  LPDKKKPLYSHSLPCLEAWLKNLGFYQSKEDRAVWLIEKPEWHAQLSLDVTDLYIRYLKS 138
           LPDKKKPLYSHSLPC+EAWLK+LGFYQSKEDRA+W IEKP+WHAQLSLDVTDL+IRYLK+
Sbjct: 81  LPDKKKPLYSHSLPCIEAWLKDLGFYQSKEDRAIWFIEKPDWHAQLSLDVTDLFIRYLKN 140

Query: 139 GPGNLEKDVERRFSYALSREDIENAVLGGP 165
           GPGNLEKD+ERRFSYALSREDIENA+LGGP
Sbjct: 141 GPGNLEKDMERRFSYALSREDIENAILGGP 170

[Close]

BLAST of Cla004219 vs. NCBI nr
Match: gi|659077667|ref|XP_008439322.1| (PREDICTED: uncharacterized protein LOC103484146 [Cucumis melo])

HSP 1 Score: 306.6 bits (784), Expect = 2.6e-80
Identity = 148/164 (90.24%), Postives = 154/164 (93.90%), Query Frame = 1


Query: 1   MSINFALQSLCNNVFPFPTSNHPEISSNWRPHSTKLPQLTNPISQSFRKSFAIVSSKSSE 60
           MSI FA  SLCNNVFP PTSNH EISS WRP STKLPQL+NPISQ  RK+F IVSSKSSE
Sbjct: 1   MSITFAFHSLCNNVFPSPTSNHLEISSIWRPISTKLPQLSNPISQPLRKTFTIVSSKSSE 60

Query: 61  AEELSTPEDEWLNKLPDKKKPLYSHSLPCLEAWLKNLGFYQSKEDRAVWLIEKPEWHAQL 120
           AEELS+PEDEWLNKLP+KKKPLYSHSLPC+EAWLKNLGFYQSKEDRA+WLIEKPEWHAQL
Sbjct: 61  AEELSSPEDEWLNKLPEKKKPLYSHSLPCVEAWLKNLGFYQSKEDRAMWLIEKPEWHAQL 120

Query: 121 SLDVTDLYIRYLKSGPGNLEKDVERRFSYALSREDIENAVLGGP 165
           SLDVTDLYIRYLKSGPGNLEKDVERRFSYALSREDIENAVLGGP
Sbjct: 121 SLDVTDLYIRYLKSGPGNLEKDVERRFSYALSREDIENAVLGGP 164

[Close]

BLAST of Cla004219 vs. NCBI nr
Match: gi|778680932|ref|XP_011651422.1| (PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC101209888, partial [Cucumis sativus])

HSP 1 Score: 281.6 bits (719), Expect = 9.0e-73
Identity = 138/157 (87.90%), Postives = 146/157 (92.99%), Query Frame = 1


Query: 9   SLCNNVFPFPTSNHPEISSNWRPHSTKLPQLTNPISQSFRKSFAIVSSKSSEAEE-LSTP 68
           ++CNNVFP PTSNH EISS WRP STKLPQ +NPISQS R SF IVSSKSSEAEE LS+P
Sbjct: 11  NVCNNVFPSPTSNHLEISSIWRPISTKLPQSSNPISQSLRNSFTIVSSKSSEAEEELSSP 70

Query: 69  EDEWLNKLPDKKKPLYSHSLPCLEAWLKNLGFYQSKEDRAVWLIEKPEWHAQLSLDVTDL 128
           EDE LNKLP+KKKPLYSHSLPC+EAWLKNLGFYQSK+D AVWLIEKPEWHAQLSLDVTDL
Sbjct: 71  EDECLNKLPEKKKPLYSHSLPCVEAWLKNLGFYQSKKDXAVWLIEKPEWHAQLSLDVTDL 130

Query: 129 YIRYLKSGPGNLEKDVERRFSYALSREDIENAVLGGP 165
           Y+RYLKSGPGNLEKDVERRFSYALSREDIENAVLGGP
Sbjct: 131 YVRYLKSGPGNLEKDVERRFSYALSREDIENAVLGGP 167

[Close]

BLAST of Cla004219 vs. NCBI nr
Match: gi|1009182166|ref|XP_015872562.1| (PREDICTED: uncharacterized protein LOC107409651, partial [Ziziphus jujuba])

HSP 1 Score: 231.5 bits (589), Expect = 1.1e-57
Identity = 116/148 (78.38%), Postives = 126/148 (85.14%), Query Frame = 1


Query: 17  FPTSNHPEISSNWRPHSTKLPQLTNPISQSFRKSFAIVSSKSSEAEELSTPEDEWLNKLP 76
           FPT   P + SN+       P  ++P+S S RKS   VSSKSSEAEELS PEDEWL KLP
Sbjct: 13  FPTP-FPSLLSNF-------PSWSHPLSLSARKSCISVSSKSSEAEELSPPEDEWLQKLP 72

Query: 77  DKKKPLYSHSLPCLEAWLKNLGFYQSKEDRAVWLIEKPEWHAQLSLDVTDLYIRYLKSGP 136
           DKKKPLYSHSLPC+EAWL +LGFYQSK+DRAVWL+EKP+WHAQLSLDVTDLYIRYLKSGP
Sbjct: 73  DKKKPLYSHSLPCIEAWLGSLGFYQSKDDRAVWLVEKPDWHAQLSLDVTDLYIRYLKSGP 132

Query: 137 GNLEKDVERRFSYALSREDIENAVLGGP 165
           GNLEKDVERRFSYALSREDIENAVLGGP
Sbjct: 133 GNLEKDVERRFSYALSREDIENAVLGGP 152

[Close]

BLAST of Cla004219 vs. NCBI nr
Match: gi|1009173970|ref|XP_015868102.1| (PREDICTED: uncharacterized protein LOC107405548 isoform X1 [Ziziphus jujuba])

HSP 1 Score: 231.5 bits (589), Expect = 1.1e-57
Identity = 116/148 (78.38%), Postives = 126/148 (85.14%), Query Frame = 1


Query: 17  FPTSNHPEISSNWRPHSTKLPQLTNPISQSFRKSFAIVSSKSSEAEELSTPEDEWLNKLP 76
           FPT   P + SN+       P  ++P+S S RKS   VSSKSSEAEELS PEDEWL KLP
Sbjct: 29  FPTP-FPSLLSNF-------PSWSHPLSLSARKSCISVSSKSSEAEELSPPEDEWLQKLP 88

Query: 77  DKKKPLYSHSLPCLEAWLKNLGFYQSKEDRAVWLIEKPEWHAQLSLDVTDLYIRYLKSGP 136
           DKKKPLYSHSLPC+EAWL +LGFYQSK+DRAVWL+EKP+WHAQLSLDVTDLYIRYLKSGP
Sbjct: 89  DKKKPLYSHSLPCIEAWLGSLGFYQSKDDRAVWLVEKPDWHAQLSLDVTDLYIRYLKSGP 148

Query: 137 GNLEKDVERRFSYALSREDIENAVLGGP 165
           GNLEKDVERRFSYALSREDIENAVLGGP
Sbjct: 149 GNLEKDVERRFSYALSREDIENAVLGGP 168

[Close]

BLAST of Cla004219 vs. NCBI nr
Match: gi|703104000|ref|XP_010097881.1| (hypothetical protein L484_011480 [Morus notabilis])

HSP 1 Score: 223.8 bits (569), Expect = 2.2e-55
Identity = 112/158 (70.89%), Postives = 126/158 (79.75%), Query Frame = 1


Query: 12  NNVFPFPTSNH-----PEISSNWRPHSTKLPQLTNPISQSFRKSFAIVSSKSSEAEELST 71
           +N+  F +S+      PE  +     S K P    P+++  RK      SKSSEAEELS+
Sbjct: 12  SNILSFTSSSSIPSKVPESPALSPSISRKFPAFCKPLARPPRKLHLRSRSKSSEAEELSS 71

Query: 72  PEDEWLNKLPDKKKPLYSHSLPCLEAWLKNLGFYQSKEDRAVWLIEKPEWHAQLSLDVTD 131
           PEDEWL KLPDKKKPLYSHSLPC+EAWL++LGFYQSKEDRAVWL+EK +WHAQLSLDVTD
Sbjct: 72  PEDEWLKKLPDKKKPLYSHSLPCIEAWLRSLGFYQSKEDRAVWLVEKADWHAQLSLDVTD 131

Query: 132 LYIRYLKSGPGNLEKDVERRFSYALSREDIENAVLGGP 165
           LYIRYLKSGPGNLEKDVERRFSYALSREDIENAVLGGP
Sbjct: 132 LYIRYLKSGPGNLEKDVERRFSYALSREDIENAVLGGP 169

The following BLAST results are available for this feature:

BLAST of Cla004219 vs. TrEMBL


Match Name	E-value	Identity	Description
W9RU92_9ROSA	1.5e-55	70.89	Uncharacterized protein OS=Morus notabilis GN=L484_011480 PE=4 SV=1	[more]
M5X0W9_PRUPE	7.7e-55	71.07	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012623mg PE=4 SV=1	[more]
A0A061G0N6_THECC	8.5e-54	84.43	Uncharacterized protein OS=Theobroma cacao GN=TCM_015318 PE=4 SV=1	[more]
A0A0D2PAE3_GOSRA	2.5e-53	83.61	Uncharacterized protein OS=Gossypium raimondii GN=B456_004G116000 PE=4 SV=1	[more]
B9I521_POPTR	4.2e-53	70.00	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0012s01190g PE=4 SV=1	[more]

BLAST of Cla004219 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659077667\|ref\|XP_008439322.1\|	2.6e-80	90.24	PREDICTED: uncharacterized protein LOC103484146 [Cucumis melo]	[more]
gi\|778680932\|ref\|XP_011651422.1\|	9.0e-73	87.90	PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC101209888, partial [C...	[more]
gi\|1009182166\|ref\|XP_015872562.1\|	1.1e-57	78.38	PREDICTED: uncharacterized protein LOC107409651, partial [Ziziphus jujuba]	[more]
gi\|1009173970\|ref\|XP_015868102.1\|	1.1e-57	78.38	PREDICTED: uncharacterized protein LOC107405548 isoform X1 [Ziziphus jujuba]	[more]
gi\|703104000\|ref\|XP_010097881.1\|	2.2e-55	70.89	hypothetical protein L484_011480 [Morus notabilis]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR021489	DUF3143

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009073	aromatic amino acid family biosynthetic process
biological_process	GO:0016226	iron-sulfur cluster assembly
biological_process	GO:0010207	photosystem II assembly
biological_process	GO:0045893	positive regulation of transcription, DNA-templated
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0016740	transferase activity

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cla004219	Cla004219	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cla004219	Cla004219.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cla004219.1.cds1	Cla004219.1.cds1	CDS
Cla004219.1.cds2	Cla004219.1.cds2	CDS

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR021489	Protein of unknown function DUF3143	PFAM	PF11341	DUF3143	coord: 97..163 score: 3.3
None	No IPR available	PANTHER	PTHR35765	FAMILY NOT NAMED	coord: 25..164 score: 3.3
None	No IPR available	PANTHER	PTHR35765:SF2	SUBFAMILY NOT NAMED	coord: 25..164 score: 3.3