CmoCh16G000870 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh16G000870
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	tRNA dimethylallyltransferase
Location	Cmo_Chr16 : 403770 .. 405968 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTCCGAGTCCTACCTTGAAAGTGGGAGGACCCTCTCTGTGTGCTTCCATTTCTATCAGGAGTTTGCAAATAAATTAGCGATTTTGATAAGTATACGTATAGATATAGATTGATAGGATAATGTCCATCACTTTTGCTTTTCAGTCTCTCTGTACCAATGTTTTCCCTTCTCCCGTTTCAAATCATCCCGAAATTTCATCGATTTGGCGTCCCATTTCCACTAAACTCCCACAATTACGCAACCCCATCTCTCAATCCTTCAGGAAAAGCTTGAGCATTGTCTCTTCCAAGTCATCCGAGGCAGAGGAGCTCTCTGCTCCAGAGGACGAGTGGCTGAACAAGCTTCCGGAAAAGAAGAAGCCCTTGTACTCTCACAGTTTGCCTTGCATCGAGGCTTGGTTAAAGAACTTGGGATTTTACCAGAGTAACGAGGACCGAGCCGTGTGGCTAATCGAGAAGCCTGAATGGCACGCTCAGCTCTCCCTGGATGTCACCGACCTTTATATAAGGTTCGCAATAGGTCTCCTTTTTGTGATTTTATGACATGGATTTGTGTTTTTCAATCTTGATTTTGGTTCTTTGCCGTTTAATTGCGTTTTCTGATTAGGGTTATTTCGTGAATTGAATTGAGGATGAATCATTCAGTGTTGCCCTACATGTTACTTTCTTATCAGGAAACAAACGTTAGTTTGAGAATTTTGTTGGAGTCCTTTTCCCATGATTTTTCTTTAGGTTGTTTAACTTGTGTAAGATATCGATGGCATTTTGATTCTGGGGTTGTGTTCATTCAGGCATCCATATGACAACTGCTTCGTTTAGGTTGCTTTAAGTGATATGCTTGTTTTATGTATTAAATCTCCGCAGAGAATAGAAAACTGATGCTTTGCAGTTGTCATTATTGAAACTATGGTCAAGATTGAGCTGGGAGAATGGGCAATTCTCTATTATTTGGCCTCTGGATTGGTTATAATAGAGAGGGGGTTTTGTAAATGTTTAAGTAGGATATTGAGCGTGTAAAATTTTGAGGTATTGAGCGGTCAACCATCCACTCTCGAGATTCATGTGGATCAATCGACCTCGAATGCAATTAATTGTCCAGAAAGTGGGTTTGTAAACTTCAAAGGTTGCTTACAACTTCAAATGGAAACGGGATCTGTTCCGTTTTGAAGTGTGAACATTTTGCAGATGCAAAAGAACATTAGTCATTCCTGCAAATGGAGGACCTTAGTTTAGGCTCCTCTGTTACATCCAGTTCAATTTATCCTTGTAATATAGATTTAGTTGCACAGCCTAGCTCAGTCTCTTTTCCACATGCCAGTAACTTTCCCAACAGATGACCAGGGAGAATTGTTATAGCCTGGCTGTTACCGTTGTTTTGAAACTTGATCGGGTTTTAAATTCTCTTGGTTGCTCGTAAACGTCTTGCAGTGCACCAAAATGTTTAAATCACGAATGAAACTTCCCCAACTTTTTGGTTGTGAGAGTAGAGAGAGGCTAGCTGGTGCATTTCAATTCTGGCTTTTGAGTCTGATAATTTGTTATCAATTGTTCTGTAAGAATACTTTCTTTCTTACGATTCGATTGTCAAACACAACTATTACAATATAAGAAAACGATGATAACCTTCCAGCAATCTCGAGAGTGCCAGAAATTGAACCGTTGTTCCATCCAAAATACAAAGCATAGTGATAACAAAGAGACTACTTACTAATACACTACTGCTAGCCTAACAAACCTCCCTAAACGAATTATCCTCAAGTCAATTCCCATGTTACCTCTTCTAGTGAATACACGATTGAATTTGATAGTTACACAATGCACATGTTGGTTTTGCAGGTATCTAAAGAGTGGACCAGGAAATCTTGAGAAAGACGTGGAGAGGAGATTTAGCTATGCACTAAGCAGAGAAGATATTGAGAATGCTGTACTCGGAGGACCATGAACACAGTGTATCATTACTCCATGTATTGCAATCATTCATTCCTTTCTGTCAATATATATATAACATAATTTCTTGATCTATTTTCTTCCCATTCCACAATTGGTAGCAATGAAATCCACTTTTTGTTCACTACACTCTACCTTTCAATGCTGTACTGCTTTGATGAACAGGGGAATAAAATTGATAGAACACATATTCTTCTCCCCACAAAATTTACTGGTACTGATGAACATTAATGCAGTTTGAGAATGGAATTTG

mRNA sequence

CTCCGAGTCCTACCTTGAAAGTGGGAGGACCCTCTCTGTGTGCTTCCATTTCTATCAGGAGTTTGCAAATAAATTAGCGATTTTGATAAGTATACGTATAGATATAGATTGATAGGATAATGTCCATCACTTTTGCTTTTCAGTCTCTCTGTACCAATGTTTTCCCTTCTCCCGTTTCAAATCATCCCGAAATTTCATCGATTTGGCGTCCCATTTCCACTAAACTCCCACAATTACGCAACCCCATCTCTCAATCCTTCAGGAAAAGCTTGAGCATTGTCTCTTCCAAGTCATCCGAGGCAGAGGAGCTCTCTGCTCCAGAGGACGAGTGGCTGAACAAGCTTCCGGAAAAGAAGAAGCCCTTGTACTCTCACAGTTTGCCTTGCATCGAGGCTTGGTTAAAGAACTTGGGATTTTACCAGAGTAACGAGGACCGAGCCGTGTGGCTAATCGAGAAGCCTGAATGGCACGCTCAGCTCTCCCTGGATGTCACCGACCTTTATATAAGGTATCTAAAGAGTGGACCAGGAAATCTTGAGAAAGACGTGGAGAGGAGATTTAGCTATGCACTAAGCAGAGAAGATATTGAGAATGCTGTACTCGGAGGACCATGAACACAGTGTATCATTACTCCATGTATTGCAATCATTCATTCCTTTCTGTCAATATATATATAACATAATTTCTTGATCTATTTTCTTCCCATTCCACAATTGGTAGCAATGAAATCCACTTTTTGTTCACTACACTCTACCTTTCAATGCTGTACTGCTTTGATGAACAGGGGAATAAAATTGATAGAACACATATTCTTCTCCCCACAAAATTTACTGGTACTGATGAACATTAATGCAGTTTGAGAATGGAATTTG

Coding sequence (CDS)

ATGTCCATCACTTTTGCTTTTCAGTCTCTCTGTACCAATGTTTTCCCTTCTCCCGTTTCAAATCATCCCGAAATTTCATCGATTTGGCGTCCCATTTCCACTAAACTCCCACAATTACGCAACCCCATCTCTCAATCCTTCAGGAAAAGCTTGAGCATTGTCTCTTCCAAGTCATCCGAGGCAGAGGAGCTCTCTGCTCCAGAGGACGAGTGGCTGAACAAGCTTCCGGAAAAGAAGAAGCCCTTGTACTCTCACAGTTTGCCTTGCATCGAGGCTTGGTTAAAGAACTTGGGATTTTACCAGAGTAACGAGGACCGAGCCGTGTGGCTAATCGAGAAGCCTGAATGGCACGCTCAGCTCTCCCTGGATGTCACCGACCTTTATATAAGGTATCTAAAGAGTGGACCAGGAAATCTTGAGAAAGACGTGGAGAGGAGATTTAGCTATGCACTAAGCAGAGAAGATATTGAGAATGCTGTACTCGGAGGACCATGA

Homology

[Close]

BLAST of CmoCh16G000870 vs. TrEMBL
Match: W9RU92_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_011480 PE=4 SV=1)

HSP 1 Score: 223.8 bits (569), Expect = 1.5e-55
Identity = 112/149 (75.17%), Postives = 122/149 (81.88%), Query Frame = 1


Query: 16  PSPVSNHPEISSIWRPISTKLPQLRNPISQSFRKSLSIVSSKSSEAEELSAPEDEWLNKL 75
           PS V   P +S     IS K P    P+++  RK      SKSSEAEELS+PEDEWL KL
Sbjct: 24  PSKVPESPALSP---SISRKFPAFCKPLARPPRKLHLRSRSKSSEAEELSSPEDEWLKKL 83

Query: 76  PEKKKPLYSHSLPCIEAWLKNLGFYQSNEDRAVWLIEKPEWHAQLSLDVTDLYIRYLKSG 135
           P+KKKPLYSHSLPCIEAWL++LGFYQS EDRAVWL+EK +WHAQLSLDVTDLYIRYLKSG
Sbjct: 84  PDKKKPLYSHSLPCIEAWLRSLGFYQSKEDRAVWLVEKADWHAQLSLDVTDLYIRYLKSG 143

Query: 136 PGNLEKDVERRFSYALSREDIENAVLGGP 165
           PGNLEKDVERRFSYALSREDIENAVLGGP
Sbjct: 144 PGNLEKDVERRFSYALSREDIENAVLGGP 169

[Close]

BLAST of CmoCh16G000870 vs. TrEMBL
Match: B9I521_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0012s01190g PE=4 SV=1)

HSP 1 Score: 219.5 bits (558), Expect = 2.9e-54
Identity = 106/153 (69.28%), Postives = 124/153 (81.05%), Query Frame = 1


Query: 12  TNVFPSPVSNHPEISSIWRPISTKLPQLRNPISQSFRKSLSIVSSKSSEAEELSAPEDEW 71
           T+  PS VS  P   S+  P+ +K      P+ +  R    I+S KSSEAEE+S+ EDEW
Sbjct: 21  TSTHPSKVSYFP---SLHPPLFSKSLSCPYPLCKFLRNPKRIISLKSSEAEEISSTEDEW 80

Query: 72  LNKLPEKKKPLYSHSLPCIEAWLKNLGFYQSNEDRAVWLIEKPEWHAQLSLDVTDLYIRY 131
           L +LP+KKKPLYSHSLPCIEAWLK+LGFYQS EDRA+W IEKP+WHAQLSLDVTDL+IRY
Sbjct: 81  LQRLPDKKKPLYSHSLPCIEAWLKDLGFYQSKEDRAIWFIEKPDWHAQLSLDVTDLFIRY 140

Query: 132 LKSGPGNLEKDVERRFSYALSREDIENAVLGGP 165
           LK+GPGNLEKD+ERRFSYALSREDIENA+LGGP
Sbjct: 141 LKNGPGNLEKDMERRFSYALSREDIENAILGGP 170

[Close]

BLAST of CmoCh16G000870 vs. TrEMBL
Match: M5X0W9_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012623mg PE=4 SV=1)

HSP 1 Score: 218.4 bits (555), Expect = 6.5e-54
Identity = 111/160 (69.38%), Postives = 128/160 (80.00%), Query Frame = 1


Query: 7   FQSLCTNVFPSPVSNHPEISSIWRPISTKLPQLRN-PISQSFRKSLSIVSSKSSEAEE-L 66
           F S+ +++FP   + +P +          LP++   P++ S RK    V SK SEAEE L
Sbjct: 12  FSSMPSSIFPRYPTPYPSL----------LPKITPYPLTHSSRKLSVPVFSKPSEAEEEL 71

Query: 67  SAPEDEWLNKLPEKKKPLYSHSLPCIEAWLKNLGFYQSNEDRAVWLIEKPEWHAQLSLDV 126
           SAPEDEWL +LP+KKKPLYSHSLPCIEAWL+NLGFYQS EDRAVWL+EKPEW AQLSLDV
Sbjct: 72  SAPEDEWLKRLPDKKKPLYSHSLPCIEAWLRNLGFYQSKEDRAVWLVEKPEWQAQLSLDV 131

Query: 127 TDLYIRYLKSGPGNLEKDVERRFSYALSREDIENAVLGGP 165
           TDLY+RYLK+GPGNLEKDVERRFSYALSREDIENAVLGGP
Sbjct: 132 TDLYVRYLKTGPGNLEKDVERRFSYALSREDIENAVLGGP 161

[Close]

BLAST of CmoCh16G000870 vs. TrEMBL
Match: A0A061G0N6_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_015318 PE=4 SV=1)

HSP 1 Score: 216.9 bits (551), Expect = 1.9e-53
Identity = 102/122 (83.61%), Postives = 112/122 (91.80%), Query Frame = 1


Query: 43  ISQSFRKSLSIVSSKSSEAEELSAPEDEWLNKLPEKKKPLYSHSLPCIEAWLKNLGFYQS 102
           +S S RK ++ VSSKSSEAEEL   EDEWLN+LP+K KPLYSHSLPCIEAWL++LGF QS
Sbjct: 44  VSHSQRKIVTFVSSKSSEAEELPTAEDEWLNRLPDKNKPLYSHSLPCIEAWLRSLGFCQS 103

Query: 103 NEDRAVWLIEKPEWHAQLSLDVTDLYIRYLKSGPGNLEKDVERRFSYALSREDIENAVLG 162
            EDRAVWLIEKP+WHAQLSLDVTDLYIRYLKSGPGNLE+DVERRFSYALSREDIENA+LG
Sbjct: 104 REDRAVWLIEKPDWHAQLSLDVTDLYIRYLKSGPGNLERDVERRFSYALSREDIENAILG 163

Query: 163 GP 165
           GP
Sbjct: 164 GP 165

[Close]

BLAST of CmoCh16G000870 vs. TrEMBL
Match: E0CUL9_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_16s0050g02270 PE=4 SV=1)

HSP 1 Score: 214.9 bits (546), Expect = 7.2e-53
Identity = 101/123 (82.11%), Postives = 110/123 (89.43%), Query Frame = 1


Query: 42  PISQSFRKSLSIVSSKSSEAEELSAPEDEWLNKLPEKKKPLYSHSLPCIEAWLKNLGFYQ 101
           P +   RKSL++V S SS AE  SA EDEWL KLPEKKKPLYSHSLPC+EAWL+NLGF+Q
Sbjct: 33  PPNSKPRKSLTLVFSSSSGAELSSAAEDEWLKKLPEKKKPLYSHSLPCVEAWLRNLGFFQ 92

Query: 102 SNEDRAVWLIEKPEWHAQLSLDVTDLYIRYLKSGPGNLEKDVERRFSYALSREDIENAVL 161
           S EDRA+W +EKPEWHAQLSLDVTDLYIRYLKSGPGNLEKDVERRFSYALSREDIENA+L
Sbjct: 93  SKEDRAIWFVEKPEWHAQLSLDVTDLYIRYLKSGPGNLEKDVERRFSYALSREDIENAIL 152

Query: 162 GGP 165
           GGP
Sbjct: 153 GGP 155

[Close]

BLAST of CmoCh16G000870 vs. TAIR10
Match: AT5G52960.1 (AT5G52960.1 unknown protein)

HSP 1 Score: 208.8 bits (530), Expect = 2.6e-54
Identity = 96/117 (82.05%), Postives = 108/117 (92.31%), Query Frame = 1


Query: 48  RKSLSIVSSKSSEAEELSAPEDEWLNKLPEKKKPLYSHSLPCIEAWLKNLGFYQSNEDRA 107
           RK L++VSSKSS+AEE+S  EDEWL KLPEK KPLYSHSLPCIEAWL+ LGFYQS +DRA
Sbjct: 54  RKPLTLVSSKSSDAEEVSDTEDEWLKKLPEKNKPLYSHSLPCIEAWLRKLGFYQSKDDRA 113

Query: 108 VWLIEKPEWHAQLSLDVTDLYIRYLKSGPGNLEKDVERRFSYALSREDIENAVLGGP 165
           VWLI+KP+WHAQLSLDVTDL IRY+KSGPGNLE+D+ERRFSYALSRED ENA+LGGP
Sbjct: 114 VWLIQKPDWHAQLSLDVTDLCIRYMKSGPGNLERDMERRFSYALSREDTENAILGGP 170

[Close]

BLAST of CmoCh16G000870 vs. NCBI nr
Match: gi|659077667|ref|XP_008439322.1| (PREDICTED: uncharacterized protein LOC103484146 [Cucumis melo])

HSP 1 Score: 312.0 bits (798), Expect = 6.2e-82
Identity = 150/164 (91.46%), Postives = 155/164 (94.51%), Query Frame = 1


Query: 1   MSITFAFQSLCTNVFPSPVSNHPEISSIWRPISTKLPQLRNPISQSFRKSLSIVSSKSSE 60
           MSITFAF SLC NVFPSP SNH EISSIWRPISTKLPQL NPISQ  RK+ +IVSSKSSE
Sbjct: 1   MSITFAFHSLCNNVFPSPTSNHLEISSIWRPISTKLPQLSNPISQPLRKTFTIVSSKSSE 60

Query: 61  AEELSAPEDEWLNKLPEKKKPLYSHSLPCIEAWLKNLGFYQSNEDRAVWLIEKPEWHAQL 120
           AEELS+PEDEWLNKLPEKKKPLYSHSLPC+EAWLKNLGFYQS EDRA+WLIEKPEWHAQL
Sbjct: 61  AEELSSPEDEWLNKLPEKKKPLYSHSLPCVEAWLKNLGFYQSKEDRAMWLIEKPEWHAQL 120

Query: 121 SLDVTDLYIRYLKSGPGNLEKDVERRFSYALSREDIENAVLGGP 165
           SLDVTDLYIRYLKSGPGNLEKDVERRFSYALSREDIENAVLGGP
Sbjct: 121 SLDVTDLYIRYLKSGPGNLEKDVERRFSYALSREDIENAVLGGP 164

[Close]

BLAST of CmoCh16G000870 vs. NCBI nr
Match: gi|778680932|ref|XP_011651422.1| (PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC101209888, partial [Cucumis sativus])

HSP 1 Score: 283.1 bits (723), Expect = 3.1e-73
Identity = 138/157 (87.90%), Postives = 145/157 (92.36%), Query Frame = 1


Query: 9   SLCTNVFPSPVSNHPEISSIWRPISTKLPQLRNPISQSFRKSLSIVSSKSSEAEE-LSAP 68
           ++C NVFPSP SNH EISSIWRPISTKLPQ  NPISQS R S +IVSSKSSEAEE LS+P
Sbjct: 11  NVCNNVFPSPTSNHLEISSIWRPISTKLPQSSNPISQSLRNSFTIVSSKSSEAEEELSSP 70

Query: 69  EDEWLNKLPEKKKPLYSHSLPCIEAWLKNLGFYQSNEDRAVWLIEKPEWHAQLSLDVTDL 128
           EDE LNKLPEKKKPLYSHSLPC+EAWLKNLGFYQS +D AVWLIEKPEWHAQLSLDVTDL
Sbjct: 71  EDECLNKLPEKKKPLYSHSLPCVEAWLKNLGFYQSKKDXAVWLIEKPEWHAQLSLDVTDL 130

Query: 129 YIRYLKSGPGNLEKDVERRFSYALSREDIENAVLGGP 165
           Y+RYLKSGPGNLEKDVERRFSYALSREDIENAVLGGP
Sbjct: 131 YVRYLKSGPGNLEKDVERRFSYALSREDIENAVLGGP 167

[Close]

BLAST of CmoCh16G000870 vs. NCBI nr
Match: gi|1009173970|ref|XP_015868102.1| (PREDICTED: uncharacterized protein LOC107405548 isoform X1 [Ziziphus jujuba])

HSP 1 Score: 230.3 bits (586), Expect = 2.4e-57
Identity = 114/156 (73.08%), Postives = 128/156 (82.05%), Query Frame = 1


Query: 13  NVFPSPVS----NHPEISSIWRPISTKLPQLRNPISQSFRKSLSIVSSKSSEAEELSAPE 72
           ++F S  S    N P+  + +  + +  P   +P+S S RKS   VSSKSSEAEELS PE
Sbjct: 13  DIFSSTTSLTPQNCPKFPTPFPSLLSNFPSWSHPLSLSARKSCISVSSKSSEAEELSPPE 72

Query: 73  DEWLNKLPEKKKPLYSHSLPCIEAWLKNLGFYQSNEDRAVWLIEKPEWHAQLSLDVTDLY 132
           DEWL KLP+KKKPLYSHSLPCIEAWL +LGFYQS +DRAVWL+EKP+WHAQLSLDVTDLY
Sbjct: 73  DEWLQKLPDKKKPLYSHSLPCIEAWLGSLGFYQSKDDRAVWLVEKPDWHAQLSLDVTDLY 132

Query: 133 IRYLKSGPGNLEKDVERRFSYALSREDIENAVLGGP 165
           IRYLKSGPGNLEKDVERRFSYALSREDIENAVLGGP
Sbjct: 133 IRYLKSGPGNLEKDVERRFSYALSREDIENAVLGGP 168

[Close]

BLAST of CmoCh16G000870 vs. NCBI nr
Match: gi|1009182166|ref|XP_015872562.1| (PREDICTED: uncharacterized protein LOC107409651, partial [Ziziphus jujuba])

HSP 1 Score: 230.3 bits (586), Expect = 2.4e-57
Identity = 111/144 (77.08%), Postives = 123/144 (85.42%), Query Frame = 1


Query: 21  NHPEISSIWRPISTKLPQLRNPISQSFRKSLSIVSSKSSEAEELSAPEDEWLNKLPEKKK 80
           N P+  + +  + +  P   +P+S S RKS   VSSKSSEAEELS PEDEWL KLP+KKK
Sbjct: 9   NCPKFPTPFPSLLSNFPSWSHPLSLSARKSCISVSSKSSEAEELSPPEDEWLQKLPDKKK 68

Query: 81  PLYSHSLPCIEAWLKNLGFYQSNEDRAVWLIEKPEWHAQLSLDVTDLYIRYLKSGPGNLE 140
           PLYSHSLPCIEAWL +LGFYQS +DRAVWL+EKP+WHAQLSLDVTDLYIRYLKSGPGNLE
Sbjct: 69  PLYSHSLPCIEAWLGSLGFYQSKDDRAVWLVEKPDWHAQLSLDVTDLYIRYLKSGPGNLE 128

Query: 141 KDVERRFSYALSREDIENAVLGGP 165
           KDVERRFSYALSREDIENAVLGGP
Sbjct: 129 KDVERRFSYALSREDIENAVLGGP 152

[Close]

BLAST of CmoCh16G000870 vs. NCBI nr
Match: gi|703104000|ref|XP_010097881.1| (hypothetical protein L484_011480 [Morus notabilis])

HSP 1 Score: 223.8 bits (569), Expect = 2.2e-55
Identity = 112/149 (75.17%), Postives = 122/149 (81.88%), Query Frame = 1


Query: 16  PSPVSNHPEISSIWRPISTKLPQLRNPISQSFRKSLSIVSSKSSEAEELSAPEDEWLNKL 75
           PS V   P +S     IS K P    P+++  RK      SKSSEAEELS+PEDEWL KL
Sbjct: 24  PSKVPESPALSP---SISRKFPAFCKPLARPPRKLHLRSRSKSSEAEELSSPEDEWLKKL 83

Query: 76  PEKKKPLYSHSLPCIEAWLKNLGFYQSNEDRAVWLIEKPEWHAQLSLDVTDLYIRYLKSG 135
           P+KKKPLYSHSLPCIEAWL++LGFYQS EDRAVWL+EK +WHAQLSLDVTDLYIRYLKSG
Sbjct: 84  PDKKKPLYSHSLPCIEAWLRSLGFYQSKEDRAVWLVEKADWHAQLSLDVTDLYIRYLKSG 143

Query: 136 PGNLEKDVERRFSYALSREDIENAVLGGP 165
           PGNLEKDVERRFSYALSREDIENAVLGGP
Sbjct: 144 PGNLEKDVERRFSYALSREDIENAVLGGP 169

The following BLAST results are available for this feature:

BLAST of CmoCh16G000870 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh16G000870 vs. TrEMBL


Match Name	E-value	Identity	Description
W9RU92_9ROSA	1.5e-55	75.17	Uncharacterized protein OS=Morus notabilis GN=L484_011480 PE=4 SV=1	[more]
B9I521_POPTR	2.9e-54	69.28	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0012s01190g PE=4 SV=1	[more]
M5X0W9_PRUPE	6.5e-54	69.38	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012623mg PE=4 SV=1	[more]
A0A061G0N6_THECC	1.9e-53	83.61	Uncharacterized protein OS=Theobroma cacao GN=TCM_015318 PE=4 SV=1	[more]
E0CUL9_VITVI	7.2e-53	82.11	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_16s0050g02270 PE=4 SV=...	[more]

BLAST of CmoCh16G000870 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G52960.1	2.6e-54	82.05	unknown protein	[more]

BLAST of CmoCh16G000870 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659077667\|ref\|XP_008439322.1\|	6.2e-82	91.46	PREDICTED: uncharacterized protein LOC103484146 [Cucumis melo]	[more]
gi\|778680932\|ref\|XP_011651422.1\|	3.1e-73	87.90	PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC101209888, partial [C...	[more]
gi\|1009173970\|ref\|XP_015868102.1\|	2.4e-57	73.08	PREDICTED: uncharacterized protein LOC107405548 isoform X1 [Ziziphus jujuba]	[more]
gi\|1009182166\|ref\|XP_015872562.1\|	2.4e-57	77.08	PREDICTED: uncharacterized protein LOC107409651, partial [Ziziphus jujuba]	[more]
gi\|703104000\|ref\|XP_010097881.1\|	2.2e-55	75.17	hypothetical protein L484_011480 [Morus notabilis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR021489	DUF3143

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009073	aromatic amino acid family biosynthetic process
biological_process	GO:0016226	iron-sulfur cluster assembly
biological_process	GO:0010207	photosystem II assembly
biological_process	GO:0045893	positive regulation of transcription, DNA-templated
biological_process	GO:0009058	biosynthetic process
biological_process	GO:0044237	cellular metabolic process
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0016740	transferase activity
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh16G000870.1	CmoCh16G000870.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR021489	Protein of unknown function DUF3143	PFAM	PF11341	DUF3143	coord: 97..163 score: 3.9
None	No IPR available	PANTHER	PTHR35765	FAMILY NOT NAMED	coord: 1..164 score: 9.6
None	No IPR available	PANTHER	PTHR35765:SF2	SUBFAMILY NOT NAMED	coord: 1..164 score: 9.6

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh16G000870	Cucsa.012810	Cucumber (Gy14) v1	cgycmoB0550
CmoCh16G000870	CmaCh16G000840	Cucurbita maxima (Rimu)	cmacmoB322
CmoCh16G000870	Cla004219	Watermelon (97103) v1	cmowmB310
CmoCh16G000870	MELO3C006968	Melon (DHL92) v3.5.1	cmomeB289
CmoCh16G000870	ClCG05G008590	Watermelon (Charleston Gray)	cmowcgB290
CmoCh16G000870	Lsi05G011700	Bottle gourd (USVL1VR-Ls)	cmolsiB300
CmoCh16G000870	Cp4.1LG14g06340	Cucurbita pepo (Zucchini)	cmocpeB307
CmoCh16G000870	MELO3C006968.2	Melon (DHL92) v3.6.1	cmomedB331
CmoCh16G000870	Cla97C05G090740	Watermelon (97103) v2	cmowmbB331
CmoCh16G000870	Bhi01G001058	Wax gourd	cmowgoB0435
CmoCh16G000870	Carg15092	Silver-seed gourd	carcmoB1326

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh16G000870	Cucumber (Chinese Long) v3	cmocucB0374
CmoCh16G000870	Cucumber (Chinese Long) v3	cmocucB0381
CmoCh16G000870	Cucumber (Chinese Long) v3	cmocucB0394
CmoCh16G000870	Cucumber (Chinese Long) v3	cmocucB0398
CmoCh16G000870	Watermelon (97103) v2	cmowmbB307
CmoCh16G000870	Watermelon (97103) v2	cmowmbB328
CmoCh16G000870	Wax gourd	cmowgoB0424
CmoCh16G000870	Cucurbita moschata (Rifu)	cmocmoB194
CmoCh16G000870	Cucurbita moschata (Rifu)	cmocmoB236
CmoCh16G000870	Cucurbita moschata (Rifu)	cmocmoB275
CmoCh16G000870	Cucurbita moschata (Rifu)	cmocmoB281
CmoCh16G000870	Cucumber (Gy14) v1	cgycmoB0601
CmoCh16G000870	Cucurbita maxima (Rimu)	cmacmoB289
CmoCh16G000870	Cucurbita maxima (Rimu)	cmacmoB405
CmoCh16G000870	Cucurbita maxima (Rimu)	cmacmoB587
CmoCh16G000870	Wild cucumber (PI 183967)	cmocpiB319
CmoCh16G000870	Wild cucumber (PI 183967)	cmocpiB337
CmoCh16G000870	Cucumber (Chinese Long) v2	cmocuB311
CmoCh16G000870	Cucumber (Chinese Long) v2	cmocuB329
CmoCh16G000870	Melon (DHL92) v3.5.1	cmomeB275
CmoCh16G000870	Watermelon (Charleston Gray)	cmowcgB282
CmoCh16G000870	Watermelon (97103) v1	cmowmB312
CmoCh16G000870	Cucurbita pepo (Zucchini)	cmocpeB303
CmoCh16G000870	Cucurbita pepo (Zucchini)	cmocpeB306
CmoCh16G000870	Cucurbita pepo (Zucchini)	cmocpeB322
CmoCh16G000870	Bottle gourd (USVL1VR-Ls)	cmolsiB286
CmoCh16G000870	Bottle gourd (USVL1VR-Ls)	cmolsiB307
CmoCh16G000870	Bottle gourd (USVL1VR-Ls)	cmolsiB308
CmoCh16G000870	Cucumber (Gy14) v2	cgybcmoB307
CmoCh16G000870	Cucumber (Gy14) v2	cgybcmoB314
CmoCh16G000870	Cucumber (Gy14) v2	cgybcmoB594
CmoCh16G000870	Melon (DHL92) v3.6.1	cmomedB312
CmoCh16G000870	Melon (DHL92) v3.6.1	cmomedB327
CmoCh16G000870	Silver-seed gourd	carcmoB0692
CmoCh16G000870	Silver-seed gourd	carcmoB0730