CmoCh16G000870.1 (mRNA) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh16G000870.1
Type	mRNA
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	tRNA dimethylallyltransferase
Location	Cmo_Chr16 : 403770 .. 405968 (-)
Sequence length	872

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTCCGAGTCCTACCTTGAAAGTGGGAGGACCCTCTCTGTGTGCTTCCATTTCTATCAGGAGTTTGCAAATAAATTAGCGATTTTGATAAGTATACGTATAGATATAGATTGATAGGATAATGTCCATCACTTTTGCTTTTCAGTCTCTCTGTACCAATGTTTTCCCTTCTCCCGTTTCAAATCATCCCGAAATTTCATCGATTTGGCGTCCCATTTCCACTAAACTCCCACAATTACGCAACCCCATCTCTCAATCCTTCAGGAAAAGCTTGAGCATTGTCTCTTCCAAGTCATCCGAGGCAGAGGAGCTCTCTGCTCCAGAGGACGAGTGGCTGAACAAGCTTCCGGAAAAGAAGAAGCCCTTGTACTCTCACAGTTTGCCTTGCATCGAGGCTTGGTTAAAGAACTTGGGATTTTACCAGAGTAACGAGGACCGAGCCGTGTGGCTAATCGAGAAGCCTGAATGGCACGCTCAGCTCTCCCTGGATGTCACCGACCTTTATATAAGGTTCGCAATAGGTCTCCTTTTTGTGATTTTATGACATGGATTTGTGTTTTTCAATCTTGATTTTGGTTCTTTGCCGTTTAATTGCGTTTTCTGATTAGGGTTATTTCGTGAATTGAATTGAGGATGAATCATTCAGTGTTGCCCTACATGTTACTTTCTTATCAGGAAACAAACGTTAGTTTGAGAATTTTGTTGGAGTCCTTTTCCCATGATTTTTCTTTAGGTTGTTTAACTTGTGTAAGATATCGATGGCATTTTGATTCTGGGGTTGTGTTCATTCAGGCATCCATATGACAACTGCTTCGTTTAGGTTGCTTTAAGTGATATGCTTGTTTTATGTATTAAATCTCCGCAGAGAATAGAAAACTGATGCTTTGCAGTTGTCATTATTGAAACTATGGTCAAGATTGAGCTGGGAGAATGGGCAATTCTCTATTATTTGGCCTCTGGATTGGTTATAATAGAGAGGGGGTTTTGTAAATGTTTAAGTAGGATATTGAGCGTGTAAAATTTTGAGGTATTGAGCGGTCAACCATCCACTCTCGAGATTCATGTGGATCAATCGACCTCGAATGCAATTAATTGTCCAGAAAGTGGGTTTGTAAACTTCAAAGGTTGCTTACAACTTCAAATGGAAACGGGATCTGTTCCGTTTTGAAGTGTGAACATTTTGCAGATGCAAAAGAACATTAGTCATTCCTGCAAATGGAGGACCTTAGTTTAGGCTCCTCTGTTACATCCAGTTCAATTTATCCTTGTAATATAGATTTAGTTGCACAGCCTAGCTCAGTCTCTTTTCCACATGCCAGTAACTTTCCCAACAGATGACCAGGGAGAATTGTTATAGCCTGGCTGTTACCGTTGTTTTGAAACTTGATCGGGTTTTAAATTCTCTTGGTTGCTCGTAAACGTCTTGCAGTGCACCAAAATGTTTAAATCACGAATGAAACTTCCCCAACTTTTTGGTTGTGAGAGTAGAGAGAGGCTAGCTGGTGCATTTCAATTCTGGCTTTTGAGTCTGATAATTTGTTATCAATTGTTCTGTAAGAATACTTTCTTTCTTACGATTCGATTGTCAAACACAACTATTACAATATAAGAAAACGATGATAACCTTCCAGCAATCTCGAGAGTGCCAGAAATTGAACCGTTGTTCCATCCAAAATACAAAGCATAGTGATAACAAAGAGACTACTTACTAATACACTACTGCTAGCCTAACAAACCTCCCTAAACGAATTATCCTCAAGTCAATTCCCATGTTACCTCTTCTAGTGAATACACGATTGAATTTGATAGTTACACAATGCACATGTTGGTTTTGCAGGTATCTAAAGAGTGGACCAGGAAATCTTGAGAAAGACGTGGAGAGGAGATTTAGCTATGCACTAAGCAGAGAAGATATTGAGAATGCTGTACTCGGAGGACCATGAACACAGTGTATCATTACTCCATGTATTGCAATCATTCATTCCTTTCTGTCAATATATATATAACATAATTTCTTGATCTATTTTCTTCCCATTCCACAATTGGTAGCAATGAAATCCACTTTTTGTTCACTACACTCTACCTTTCAATGCTGTACTGCTTTGATGAACAGGGGAATAAAATTGATAGAACACATATTCTTCTCCCCACAAAATTTACTGGTACTGATGAACATTAATGCAGTTTGAGAATGGAATTTG

mRNA sequence

CTCCGAGTCCTACCTTGAAAGTGGGAGGACCCTCTCTGTGTGCTTCCATTTCTATCAGGAGTTTGCAAATAAATTAGCGATTTTGATAAGTATACGTATAGATATAGATTGATAGGATAATGTCCATCACTTTTGCTTTTCAGTCTCTCTGTACCAATGTTTTCCCTTCTCCCGTTTCAAATCATCCCGAAATTTCATCGATTTGGCGTCCCATTTCCACTAAACTCCCACAATTACGCAACCCCATCTCTCAATCCTTCAGGAAAAGCTTGAGCATTGTCTCTTCCAAGTCATCCGAGGCAGAGGAGCTCTCTGCTCCAGAGGACGAGTGGCTGAACAAGCTTCCGGAAAAGAAGAAGCCCTTGTACTCTCACAGTTTGCCTTGCATCGAGGCTTGGTTAAAGAACTTGGGATTTTACCAGAGTAACGAGGACCGAGCCGTGTGGCTAATCGAGAAGCCTGAATGGCACGCTCAGCTCTCCCTGGATGTCACCGACCTTTATATAAGGTATCTAAAGAGTGGACCAGGAAATCTTGAGAAAGACGTGGAGAGGAGATTTAGCTATGCACTAAGCAGAGAAGATATTGAGAATGCTGTACTCGGAGGACCATGAACACAGTGTATCATTACTCCATGTATTGCAATCATTCATTCCTTTCTGTCAATATATATATAACATAATTTCTTGATCTATTTTCTTCCCATTCCACAATTGGTAGCAATGAAATCCACTTTTTGTTCACTACACTCTACCTTTCAATGCTGTACTGCTTTGATGAACAGGGGAATAAAATTGATAGAACACATATTCTTCTCCCCACAAAATTTACTGGTACTGATGAACATTAATGCAGTTTGAGAATGGAATTTG

Coding sequence (CDS)

ATGTCCATCACTTTTGCTTTTCAGTCTCTCTGTACCAATGTTTTCCCTTCTCCCGTTTCAAATCATCCCGAAATTTCATCGATTTGGCGTCCCATTTCCACTAAACTCCCACAATTACGCAACCCCATCTCTCAATCCTTCAGGAAAAGCTTGAGCATTGTCTCTTCCAAGTCATCCGAGGCAGAGGAGCTCTCTGCTCCAGAGGACGAGTGGCTGAACAAGCTTCCGGAAAAGAAGAAGCCCTTGTACTCTCACAGTTTGCCTTGCATCGAGGCTTGGTTAAAGAACTTGGGATTTTACCAGAGTAACGAGGACCGAGCCGTGTGGCTAATCGAGAAGCCTGAATGGCACGCTCAGCTCTCCCTGGATGTCACCGACCTTTATATAAGGTATCTAAAGAGTGGACCAGGAAATCTTGAGAAAGACGTGGAGAGGAGATTTAGCTATGCACTAAGCAGAGAAGATATTGAGAATGCTGTACTCGGAGGACCATGA

Homology

[Close]

BLAST of CmoCh16G000870.1 vs. TrEMBL
Match: W9RU92_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_011480 PE=4 SV=1)

HSP 1 Score: 223.8 bits (569), Expect = 1.5e-55
Identity = 112/149 (75.17%), Postives = 122/149 (81.88%), Query Frame = 1


Query: 16  PSPVSNHPEISSIWRPISTKLPQLRNPISQSFRKSLSIVSSKSSEAEELSAPEDEWLNKL 75
           PS V   P +S     IS K P    P+++  RK      SKSSEAEELS+PEDEWL KL
Sbjct: 24  PSKVPESPALSP---SISRKFPAFCKPLARPPRKLHLRSRSKSSEAEELSSPEDEWLKKL 83

Query: 76  PEKKKPLYSHSLPCIEAWLKNLGFYQSNEDRAVWLIEKPEWHAQLSLDVTDLYIRYLKSG 135
           P+KKKPLYSHSLPCIEAWL++LGFYQS EDRAVWL+EK +WHAQLSLDVTDLYIRYLKSG
Sbjct: 84  PDKKKPLYSHSLPCIEAWLRSLGFYQSKEDRAVWLVEKADWHAQLSLDVTDLYIRYLKSG 143

Query: 136 PGNLEKDVERRFSYALSREDIENAVLGGP 165
           PGNLEKDVERRFSYALSREDIENAVLGGP
Sbjct: 144 PGNLEKDVERRFSYALSREDIENAVLGGP 169

[Close]

BLAST of CmoCh16G000870.1 vs. TrEMBL
Match: B9I521_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0012s01190g PE=4 SV=1)

HSP 1 Score: 219.5 bits (558), Expect = 2.9e-54
Identity = 106/153 (69.28%), Postives = 124/153 (81.05%), Query Frame = 1


Query: 12  TNVFPSPVSNHPEISSIWRPISTKLPQLRNPISQSFRKSLSIVSSKSSEAEELSAPEDEW 71
           T+  PS VS  P   S+  P+ +K      P+ +  R    I+S KSSEAEE+S+ EDEW
Sbjct: 21  TSTHPSKVSYFP---SLHPPLFSKSLSCPYPLCKFLRNPKRIISLKSSEAEEISSTEDEW 80

Query: 72  LNKLPEKKKPLYSHSLPCIEAWLKNLGFYQSNEDRAVWLIEKPEWHAQLSLDVTDLYIRY 131
           L +LP+KKKPLYSHSLPCIEAWLK+LGFYQS EDRA+W IEKP+WHAQLSLDVTDL+IRY
Sbjct: 81  LQRLPDKKKPLYSHSLPCIEAWLKDLGFYQSKEDRAIWFIEKPDWHAQLSLDVTDLFIRY 140

Query: 132 LKSGPGNLEKDVERRFSYALSREDIENAVLGGP 165
           LK+GPGNLEKD+ERRFSYALSREDIENA+LGGP
Sbjct: 141 LKNGPGNLEKDMERRFSYALSREDIENAILGGP 170

[Close]

BLAST of CmoCh16G000870.1 vs. TrEMBL
Match: M5X0W9_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012623mg PE=4 SV=1)

HSP 1 Score: 218.4 bits (555), Expect = 6.5e-54
Identity = 111/160 (69.38%), Postives = 128/160 (80.00%), Query Frame = 1


Query: 7   FQSLCTNVFPSPVSNHPEISSIWRPISTKLPQLRN-PISQSFRKSLSIVSSKSSEAEE-L 66
           F S+ +++FP   + +P +          LP++   P++ S RK    V SK SEAEE L
Sbjct: 12  FSSMPSSIFPRYPTPYPSL----------LPKITPYPLTHSSRKLSVPVFSKPSEAEEEL 71

Query: 67  SAPEDEWLNKLPEKKKPLYSHSLPCIEAWLKNLGFYQSNEDRAVWLIEKPEWHAQLSLDV 126
           SAPEDEWL +LP+KKKPLYSHSLPCIEAWL+NLGFYQS EDRAVWL+EKPEW AQLSLDV
Sbjct: 72  SAPEDEWLKRLPDKKKPLYSHSLPCIEAWLRNLGFYQSKEDRAVWLVEKPEWQAQLSLDV 131

Query: 127 TDLYIRYLKSGPGNLEKDVERRFSYALSREDIENAVLGGP 165
           TDLY+RYLK+GPGNLEKDVERRFSYALSREDIENAVLGGP
Sbjct: 132 TDLYVRYLKTGPGNLEKDVERRFSYALSREDIENAVLGGP 161

[Close]

BLAST of CmoCh16G000870.1 vs. TrEMBL
Match: A0A061G0N6_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_015318 PE=4 SV=1)

HSP 1 Score: 216.9 bits (551), Expect = 1.9e-53
Identity = 102/122 (83.61%), Postives = 112/122 (91.80%), Query Frame = 1


Query: 43  ISQSFRKSLSIVSSKSSEAEELSAPEDEWLNKLPEKKKPLYSHSLPCIEAWLKNLGFYQS 102
           +S S RK ++ VSSKSSEAEEL   EDEWLN+LP+K KPLYSHSLPCIEAWL++LGF QS
Sbjct: 44  VSHSQRKIVTFVSSKSSEAEELPTAEDEWLNRLPDKNKPLYSHSLPCIEAWLRSLGFCQS 103

Query: 103 NEDRAVWLIEKPEWHAQLSLDVTDLYIRYLKSGPGNLEKDVERRFSYALSREDIENAVLG 162
            EDRAVWLIEKP+WHAQLSLDVTDLYIRYLKSGPGNLE+DVERRFSYALSREDIENA+LG
Sbjct: 104 REDRAVWLIEKPDWHAQLSLDVTDLYIRYLKSGPGNLERDVERRFSYALSREDIENAILG 163

Query: 163 GP 165
           GP
Sbjct: 164 GP 165

[Close]

BLAST of CmoCh16G000870.1 vs. TrEMBL
Match: E0CUL9_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_16s0050g02270 PE=4 SV=1)

HSP 1 Score: 214.9 bits (546), Expect = 7.2e-53
Identity = 101/123 (82.11%), Postives = 110/123 (89.43%), Query Frame = 1


Query: 42  PISQSFRKSLSIVSSKSSEAEELSAPEDEWLNKLPEKKKPLYSHSLPCIEAWLKNLGFYQ 101
           P +   RKSL++V S SS AE  SA EDEWL KLPEKKKPLYSHSLPC+EAWL+NLGF+Q
Sbjct: 33  PPNSKPRKSLTLVFSSSSGAELSSAAEDEWLKKLPEKKKPLYSHSLPCVEAWLRNLGFFQ 92

Query: 102 SNEDRAVWLIEKPEWHAQLSLDVTDLYIRYLKSGPGNLEKDVERRFSYALSREDIENAVL 161
           S EDRA+W +EKPEWHAQLSLDVTDLYIRYLKSGPGNLEKDVERRFSYALSREDIENA+L
Sbjct: 93  SKEDRAIWFVEKPEWHAQLSLDVTDLYIRYLKSGPGNLEKDVERRFSYALSREDIENAIL 152

Query: 162 GGP 165
           GGP
Sbjct: 153 GGP 155

[Close]

BLAST of CmoCh16G000870.1 vs. TAIR10
Match: AT5G52960.1 (AT5G52960.1 unknown protein)

HSP 1 Score: 208.8 bits (530), Expect = 2.6e-54
Identity = 96/117 (82.05%), Postives = 108/117 (92.31%), Query Frame = 1


Query: 48  RKSLSIVSSKSSEAEELSAPEDEWLNKLPEKKKPLYSHSLPCIEAWLKNLGFYQSNEDRA 107
           RK L++VSSKSS+AEE+S  EDEWL KLPEK KPLYSHSLPCIEAWL+ LGFYQS +DRA
Sbjct: 54  RKPLTLVSSKSSDAEEVSDTEDEWLKKLPEKNKPLYSHSLPCIEAWLRKLGFYQSKDDRA 113

Query: 108 VWLIEKPEWHAQLSLDVTDLYIRYLKSGPGNLEKDVERRFSYALSREDIENAVLGGP 165
           VWLI+KP+WHAQLSLDVTDL IRY+KSGPGNLE+D+ERRFSYALSRED ENA+LGGP
Sbjct: 114 VWLIQKPDWHAQLSLDVTDLCIRYMKSGPGNLERDMERRFSYALSREDTENAILGGP 170

[Close]

BLAST of CmoCh16G000870.1 vs. NCBI nr
Match: gi|659077667|ref|XP_008439322.1| (PREDICTED: uncharacterized protein LOC103484146 [Cucumis melo])

HSP 1 Score: 312.0 bits (798), Expect = 6.2e-82
Identity = 150/164 (91.46%), Postives = 155/164 (94.51%), Query Frame = 1


Query: 1   MSITFAFQSLCTNVFPSPVSNHPEISSIWRPISTKLPQLRNPISQSFRKSLSIVSSKSSE 60
           MSITFAF SLC NVFPSP SNH EISSIWRPISTKLPQL NPISQ  RK+ +IVSSKSSE
Sbjct: 1   MSITFAFHSLCNNVFPSPTSNHLEISSIWRPISTKLPQLSNPISQPLRKTFTIVSSKSSE 60

Query: 61  AEELSAPEDEWLNKLPEKKKPLYSHSLPCIEAWLKNLGFYQSNEDRAVWLIEKPEWHAQL 120
           AEELS+PEDEWLNKLPEKKKPLYSHSLPC+EAWLKNLGFYQS EDRA+WLIEKPEWHAQL
Sbjct: 61  AEELSSPEDEWLNKLPEKKKPLYSHSLPCVEAWLKNLGFYQSKEDRAMWLIEKPEWHAQL 120

Query: 121 SLDVTDLYIRYLKSGPGNLEKDVERRFSYALSREDIENAVLGGP 165
           SLDVTDLYIRYLKSGPGNLEKDVERRFSYALSREDIENAVLGGP
Sbjct: 121 SLDVTDLYIRYLKSGPGNLEKDVERRFSYALSREDIENAVLGGP 164

[Close]

BLAST of CmoCh16G000870.1 vs. NCBI nr
Match: gi|778680932|ref|XP_011651422.1| (PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC101209888, partial [Cucumis sativus])

HSP 1 Score: 283.1 bits (723), Expect = 3.1e-73
Identity = 138/157 (87.90%), Postives = 145/157 (92.36%), Query Frame = 1


Query: 9   SLCTNVFPSPVSNHPEISSIWRPISTKLPQLRNPISQSFRKSLSIVSSKSSEAEE-LSAP 68
           ++C NVFPSP SNH EISSIWRPISTKLPQ  NPISQS R S +IVSSKSSEAEE LS+P
Sbjct: 11  NVCNNVFPSPTSNHLEISSIWRPISTKLPQSSNPISQSLRNSFTIVSSKSSEAEEELSSP 70

Query: 69  EDEWLNKLPEKKKPLYSHSLPCIEAWLKNLGFYQSNEDRAVWLIEKPEWHAQLSLDVTDL 128
           EDE LNKLPEKKKPLYSHSLPC+EAWLKNLGFYQS +D AVWLIEKPEWHAQLSLDVTDL
Sbjct: 71  EDECLNKLPEKKKPLYSHSLPCVEAWLKNLGFYQSKKDXAVWLIEKPEWHAQLSLDVTDL 130

Query: 129 YIRYLKSGPGNLEKDVERRFSYALSREDIENAVLGGP 165
           Y+RYLKSGPGNLEKDVERRFSYALSREDIENAVLGGP
Sbjct: 131 YVRYLKSGPGNLEKDVERRFSYALSREDIENAVLGGP 167

[Close]

BLAST of CmoCh16G000870.1 vs. NCBI nr
Match: gi|1009173970|ref|XP_015868102.1| (PREDICTED: uncharacterized protein LOC107405548 isoform X1 [Ziziphus jujuba])

HSP 1 Score: 230.3 bits (586), Expect = 2.4e-57
Identity = 114/156 (73.08%), Postives = 128/156 (82.05%), Query Frame = 1


Query: 13  NVFPSPVS----NHPEISSIWRPISTKLPQLRNPISQSFRKSLSIVSSKSSEAEELSAPE 72
           ++F S  S    N P+  + +  + +  P   +P+S S RKS   VSSKSSEAEELS PE
Sbjct: 13  DIFSSTTSLTPQNCPKFPTPFPSLLSNFPSWSHPLSLSARKSCISVSSKSSEAEELSPPE 72

Query: 73  DEWLNKLPEKKKPLYSHSLPCIEAWLKNLGFYQSNEDRAVWLIEKPEWHAQLSLDVTDLY 132
           DEWL KLP+KKKPLYSHSLPCIEAWL +LGFYQS +DRAVWL+EKP+WHAQLSLDVTDLY
Sbjct: 73  DEWLQKLPDKKKPLYSHSLPCIEAWLGSLGFYQSKDDRAVWLVEKPDWHAQLSLDVTDLY 132

Query: 133 IRYLKSGPGNLEKDVERRFSYALSREDIENAVLGGP 165
           IRYLKSGPGNLEKDVERRFSYALSREDIENAVLGGP
Sbjct: 133 IRYLKSGPGNLEKDVERRFSYALSREDIENAVLGGP 168

[Close]

BLAST of CmoCh16G000870.1 vs. NCBI nr
Match: gi|1009182166|ref|XP_015872562.1| (PREDICTED: uncharacterized protein LOC107409651, partial [Ziziphus jujuba])

HSP 1 Score: 230.3 bits (586), Expect = 2.4e-57
Identity = 111/144 (77.08%), Postives = 123/144 (85.42%), Query Frame = 1


Query: 21  NHPEISSIWRPISTKLPQLRNPISQSFRKSLSIVSSKSSEAEELSAPEDEWLNKLPEKKK 80
           N P+  + +  + +  P   +P+S S RKS   VSSKSSEAEELS PEDEWL KLP+KKK
Sbjct: 9   NCPKFPTPFPSLLSNFPSWSHPLSLSARKSCISVSSKSSEAEELSPPEDEWLQKLPDKKK 68

Query: 81  PLYSHSLPCIEAWLKNLGFYQSNEDRAVWLIEKPEWHAQLSLDVTDLYIRYLKSGPGNLE 140
           PLYSHSLPCIEAWL +LGFYQS +DRAVWL+EKP+WHAQLSLDVTDLYIRYLKSGPGNLE
Sbjct: 69  PLYSHSLPCIEAWLGSLGFYQSKDDRAVWLVEKPDWHAQLSLDVTDLYIRYLKSGPGNLE 128

Query: 141 KDVERRFSYALSREDIENAVLGGP 165
           KDVERRFSYALSREDIENAVLGGP
Sbjct: 129 KDVERRFSYALSREDIENAVLGGP 152

[Close]

BLAST of CmoCh16G000870.1 vs. NCBI nr
Match: gi|703104000|ref|XP_010097881.1| (hypothetical protein L484_011480 [Morus notabilis])

HSP 1 Score: 223.8 bits (569), Expect = 2.2e-55
Identity = 112/149 (75.17%), Postives = 122/149 (81.88%), Query Frame = 1


Query: 16  PSPVSNHPEISSIWRPISTKLPQLRNPISQSFRKSLSIVSSKSSEAEELSAPEDEWLNKL 75
           PS V   P +S     IS K P    P+++  RK      SKSSEAEELS+PEDEWL KL
Sbjct: 24  PSKVPESPALSP---SISRKFPAFCKPLARPPRKLHLRSRSKSSEAEELSSPEDEWLKKL 83

Query: 76  PEKKKPLYSHSLPCIEAWLKNLGFYQSNEDRAVWLIEKPEWHAQLSLDVTDLYIRYLKSG 135
           P+KKKPLYSHSLPCIEAWL++LGFYQS EDRAVWL+EK +WHAQLSLDVTDLYIRYLKSG
Sbjct: 84  PDKKKPLYSHSLPCIEAWLRSLGFYQSKEDRAVWLVEKADWHAQLSLDVTDLYIRYLKSG 143

Query: 136 PGNLEKDVERRFSYALSREDIENAVLGGP 165
           PGNLEKDVERRFSYALSREDIENAVLGGP
Sbjct: 144 PGNLEKDVERRFSYALSREDIENAVLGGP 169

The following BLAST results are available for this feature:

BLAST of CmoCh16G000870.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh16G000870.1 vs. TrEMBL


Match Name	E-value	Identity	Description
W9RU92_9ROSA	1.5e-55	75.17	Uncharacterized protein OS=Morus notabilis GN=L484_011480 PE=4 SV=1	[more]
B9I521_POPTR	2.9e-54	69.28	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0012s01190g PE=4 SV=1	[more]
M5X0W9_PRUPE	6.5e-54	69.38	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012623mg PE=4 SV=1	[more]
A0A061G0N6_THECC	1.9e-53	83.61	Uncharacterized protein OS=Theobroma cacao GN=TCM_015318 PE=4 SV=1	[more]
E0CUL9_VITVI	7.2e-53	82.11	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_16s0050g02270 PE=4 SV=...	[more]

BLAST of CmoCh16G000870.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G52960.1	2.6e-54	82.05	unknown protein	[more]

BLAST of CmoCh16G000870.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659077667\|ref\|XP_008439322.1\|	6.2e-82	91.46	PREDICTED: uncharacterized protein LOC103484146 [Cucumis melo]	[more]
gi\|778680932\|ref\|XP_011651422.1\|	3.1e-73	87.90	PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC101209888, partial [C...	[more]
gi\|1009173970\|ref\|XP_015868102.1\|	2.4e-57	73.08	PREDICTED: uncharacterized protein LOC107405548 isoform X1 [Ziziphus jujuba]	[more]
gi\|1009182166\|ref\|XP_015872562.1\|	2.4e-57	77.08	PREDICTED: uncharacterized protein LOC107409651, partial [Ziziphus jujuba]	[more]
gi\|703104000\|ref\|XP_010097881.1\|	2.2e-55	75.17	hypothetical protein L484_011480 [Morus notabilis]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR021489	DUF3143

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009073	aromatic amino acid family biosynthetic process
biological_process	GO:0016226	iron-sulfur cluster assembly
biological_process	GO:0010207	photosystem II assembly
biological_process	GO:0045893	positive regulation of transcription, DNA-templated
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0016740	transferase activity

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmoCh16G000870	CmoCh16G000870	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmoCh16G000870.1	CmoCh16G000870.1-protein	polypeptide

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh16G000870.1.three_prime_UTR.1	CmoCh16G000870.1.three_prime_UTR.1	three_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh16G000870.1.CDS.2	CmoCh16G000870.1.CDS.2	CDS
CmoCh16G000870.1.CDS.1	CmoCh16G000870.1.CDS.1	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh16G000870.1.five_prime_UTR.1	CmoCh16G000870.1.five_prime_UTR.1	five_prime_UTR

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh16G000870.1.exon.2	CmoCh16G000870.1.exon.2	exon
CmoCh16G000870.1.exon.1	CmoCh16G000870.1.exon.1	exon

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR021489	Protein of unknown function DUF3143	PFAM	PF11341	DUF3143	coord: 97..163 score: 3.9
None	No IPR available	PANTHER	PTHR35765	FAMILY NOT NAMED	coord: 1..164 score: 9.6
None	No IPR available	PANTHER	PTHR35765:SF2	SUBFAMILY NOT NAMED	coord: 1..164 score: 9.6