Cla003533 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla003533
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Unknown Protein (AHRD V1)
Location	Chr1 : 14032033 .. 14032490 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCCCAAAAAACATCTTGTTTGATCTTTGAGGATCTTGGAAAGCTGAAGGAGAGCTTCCATCCAAATGACTTGAAATGCTCCCATTTCAGAAGGGTTTACAGAAACTCCTCAGATTTTGACCTAAAAAATGGATACAAATTGGGAACTTCAATCTCCTTTGACATTCCTGATCATGTTCCTAATCTGTGTAATGAGTGTGAGAAGCCTGATGGGCATTGTGGAGTGGGTTTGAGATGCATATGCCATGTTCTTGAGTGCAGTATGTTTCTGATTCTCTAGTCTTACAAAGTTAATTTTTACTTTTTGACATTTGATTTGAGACTCATGATATTTACTGCTTCTTCTATGATTGTGCAGAAGATAAGGTGTTTTCTAAGGGTGGAATTGTCAGACCTGGTGGTGTATTTCTCCTTTCTTTGCTGGCTTTTTTTGTGATGATCATTTTGTCTATGTAA

mRNA sequence

ATGTCCCAAAAAACATCTTGTTTGATCTTTGAGGATCTTGGAAAGCTGAAGGAGAGCTTCCATCCAAATGACTTGAAATGCTCCCATTTCAGAAGGGTTTACAGAAACTCCTCAGATTTTGACCTAAAAAATGGATACAAATTGGGAACTTCAATCTCCTTTGACATTCCTGATCATGTTCCTAATCTGTGTAATGAGTGTGAGAAGCCTGATGGGCATTGTGGAGTGGGTTTGAGATGCATATGCCATGTTCTTGAGTGCAAAGATAAGGTGTTTTCTAAGGGTGGAATTGTCAGACCTGGTGGTGTATTTCTCCTTTCTTTGCTGGCTTTTTTTGTGATGATCATTTTGTCTATGTAA

Coding sequence (CDS)

ATGTCCCAAAAAACATCTTGTTTGATCTTTGAGGATCTTGGAAAGCTGAAGGAGAGCTTCCATCCAAATGACTTGAAATGCTCCCATTTCAGAAGGGTTTACAGAAACTCCTCAGATTTTGACCTAAAAAATGGATACAAATTGGGAACTTCAATCTCCTTTGACATTCCTGATCATGTTCCTAATCTGTGTAATGAGTGTGAGAAGCCTGATGGGCATTGTGGAGTGGGTTTGAGATGCATATGCCATGTTCTTGAGTGCAAAGATAAGGTGTTTTCTAAGGGTGGAATTGTCAGACCTGGTGGTGTATTTCTCCTTTCTTTGCTGGCTTTTTTTGTGATGATCATTTTGTCTATGTAA

Protein sequence

MSQKTSCLIFEDLGKLKESFHPNDLKCSHFRRVYRNSSDFDLKNGYKLGTSISFDIPDHVPNLCNECEKPDGHCGVGLRCICHVLECKDKVFSKGGIVRPGGVFLLSLLAFFVMIILSM

Homology

[Close]

BLAST of Cla003533 vs. TrEMBL
Match: W9R0T5_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_008982 PE=4 SV=1)

HSP 1 Score: 146.0 bits (367), Expect = 3.0e-32
Identity = 68/113 (60.18%), Postives = 86/113 (76.11%), Query Frame = 1


Query: 6   SCLIFEDLGKLKESFHPNDLKCSHFRRVYR-NSSDFDLK-NGYKLGTSISFDIPDHVPNL 65
           +CL+ + + KL  SFHP DL CSH+RR YR  SSD D +  G++LGT ISFDIPDH PN+
Sbjct: 162 NCLLIDHVEKLDMSFHPRDLNCSHYRRFYRVESSDDDGEFEGFELGTRISFDIPDHAPNV 221

Query: 66  CNECEKPDGHCGVGLRCICHVLECKDKVFSKGGIVRPGGVFLLSLLAFFVMII 117
           C+ECEKP+G+CGVGLRCICH  ECKDKV SKGG +   G  L+SL+ F V+++
Sbjct: 222 CSECEKPNGNCGVGLRCICHAKECKDKVVSKGGSINGFGNVLVSLVCFLVVMV 274

[Close]

BLAST of Cla003533 vs. TrEMBL
Match: B9T5T7_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1180720 PE=4 SV=1)

HSP 1 Score: 144.4 bits (363), Expect = 8.7e-32
Identity = 64/115 (55.65%), Postives = 86/115 (74.78%), Query Frame = 1


Query: 6   SCLIFEDLGKLKESFHPNDLKCSHFRRVYRNS-SDFDLKNGYKLGTSISFDIPDHVPNLC 65
           SCL+  +L KL +SFHP DL CSH+ R+YR+S +D D   GY+LGT ISFDIPDHVPN+C
Sbjct: 160 SCLLVNNLDKLDKSFHPKDLNCSHYSRIYRSSLNDDDNSIGYELGTRISFDIPDHVPNIC 219

Query: 66  NECEKPDGHCGVGLRCICHVLECKDKVFSKGGIVRP-GGVFLLSLLAFFVMIILS 119
           +ECEKP+G+CGVGL+CICH  ECK+KV S  G ++P   + + S+L   V++  +
Sbjct: 220 DECEKPNGNCGVGLKCICHPKECKNKVISTAGSIKPSANIVIFSMLPLIVLVFFT 274

[Close]

BLAST of Cla003533 vs. TrEMBL
Match: A0A067KE41_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11265 PE=4 SV=1)

HSP 1 Score: 143.3 bits (360), Expect = 1.9e-31
Identity = 66/112 (58.93%), Postives = 84/112 (75.00%), Query Frame = 1


Query: 6   SCLIFEDLGKLKESFHPNDLKCSHFRRVYRNSSDFDLKNGYKLGTSISFDIPDHVPNLCN 65
           SCL+  D+ KL   FHP DL CSH+R VYR+SS  D  + Y+LG+ ISFDIPDHVP++CN
Sbjct: 160 SCLLVNDIEKLDGGFHPKDLNCSHYRLVYRSSSKDDDYSEYELGSRISFDIPDHVPDICN 219

Query: 66  ECEKPDGHCGVGLRCICHVLECKDKVFSKGGIVRP-GGVFLLSLLAFFVMII 117
           EC+KP+G+CGVGLRCICH  ECKDKV S  G V+  G   L+S+L+F V+ +
Sbjct: 220 ECQKPNGNCGVGLRCICHPKECKDKVISIAGSVKQFGNNVLISVLSFIVIFV 271

[Close]

BLAST of Cla003533 vs. TrEMBL
Match: F6GW45_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_06s0061g01370 PE=4 SV=1)

HSP 1 Score: 140.2 bits (352), Expect = 1.6e-30
Identity = 64/112 (57.14%), Postives = 82/112 (73.21%), Query Frame = 1


Query: 5   TSCLIFEDLGKLKESFHPNDLKCSHFRRVYRNSS-DFDLKNGYKLGTSISFDIPDHVPNL 64
           +SCL+ +DL KL   F P +L CSH+ RVYR+SS D D   G++LGT ISF++P HVP++
Sbjct: 111 SSCLLIDDLEKLNMGFEPKELNCSHYSRVYRDSSGDDDGDGGFELGTRISFEVPGHVPDI 170

Query: 65  CNECEKPDGHCGVGLRCICHVLECKDKVFSKGGIVRPGGVFLLSLLAFFVMI 116
           C ECEK +G+CGVGLRCICH  ECKDKV S GG   P G  L SL++F +M+
Sbjct: 171 CKECEKSNGNCGVGLRCICHPKECKDKVLSMGGSKSPLGTILFSLISFTMML 222

[Close]

BLAST of Cla003533 vs. TrEMBL
Match: B9HQU1_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0009s15040g PE=4 SV=2)

HSP 1 Score: 139.0 bits (349), Expect = 3.6e-30
Identity = 60/104 (57.69%), Postives = 80/104 (76.92%), Query Frame = 1


Query: 13  LGKLKESFHPNDLKCSHFRRVYRNSSDFDLKNGYKLGTSISFDIPDHVPNLCNECEKPDG 72
           L  L ++FHP DL CSH+ +VYR S D +   GY+LGT ISFDIPDHVP++CNEC+K +G
Sbjct: 167 LENLDKAFHPKDLNCSHYSQVYRRSLDDEDYKGYELGTRISFDIPDHVPDICNECQKSNG 226

Query: 73  HCGVGLRCICHVLECKDKVFSKGGIVRPGGVFLLSLLAFFVMII 117
           +CGVGL+CICH  +C+DKV S  G  +P G  LLS+L+FFV+++
Sbjct: 227 NCGVGLKCICHPQDCRDKVISMAGSTKPVGNVLLSVLSFFVVLV 270

[Close]

BLAST of Cla003533 vs. NCBI nr
Match: gi|659071772|ref|XP_008461870.1| (PREDICTED: uncharacterized protein LOC103500362 [Cucumis melo])

HSP 1 Score: 231.5 bits (589), Expect = 7.7e-58
Identity = 106/119 (89.08%), Postives = 114/119 (95.80%), Query Frame = 1


Query: 1   MSQKTSCLIFEDLGKLKESFHPNDLKCSHFRRVYRNSSDFDLKNGYKLGTSISFDIPDHV 60
           +SQK SCLIFEDLGKL+ESFHPNDLKCSHFRRVYRNSSD +LKNGYKLGTSISFDIPDHV
Sbjct: 151 ISQKVSCLIFEDLGKLQESFHPNDLKCSHFRRVYRNSSDVELKNGYKLGTSISFDIPDHV 210

Query: 61  PNLCNECEKPDGHCGVGLRCICHVLECKDKVFSKGGIVRPGGVFLLSLLAFFVMIILSM 120
           PNLC+ECEKPDGHCGVGLRCICHVLECKDKVFSKGGIVRPGG  L+SL+A FV+II+SM
Sbjct: 211 PNLCHECEKPDGHCGVGLRCICHVLECKDKVFSKGGIVRPGGKILISLMAVFVVIIISM 269

[Close]

BLAST of Cla003533 vs. NCBI nr
Match: gi|449443410|ref|XP_004139470.1| (PREDICTED: uncharacterized protein LOC101222629 isoform X1 [Cucumis sativus])

HSP 1 Score: 227.3 bits (578), Expect = 1.5e-56
Identity = 105/118 (88.98%), Postives = 113/118 (95.76%), Query Frame = 1


Query: 2   SQKTSCLIFEDLGKLKESFHPNDLKCSHFRRVYRNSSDFDLKNGYKLGTSISFDIPDHVP 61
           SQK+SCLIFEDLGKL+ESFHPNDLKCSHFRRVYRNSSD +LKNGYKLGTSISFDIPDHVP
Sbjct: 152 SQKSSCLIFEDLGKLQESFHPNDLKCSHFRRVYRNSSDVELKNGYKLGTSISFDIPDHVP 211

Query: 62  NLCNECEKPDGHCGVGLRCICHVLECKDKVFSKGGIVRPGGVFLLSLLAFFVMIILSM 120
           N C+ECEKPDGHCGVGLRCICHVL+CKDKVFSKGGIVRP G FL+SLLA FV+II+SM
Sbjct: 212 NPCHECEKPDGHCGVGLRCICHVLDCKDKVFSKGGIVRPCGKFLISLLAVFVVIIISM 269

[Close]

BLAST of Cla003533 vs. NCBI nr
Match: gi|449443412|ref|XP_004139471.1| (PREDICTED: uncharacterized protein LOC101222629 isoform X2 [Cucumis sativus])

HSP 1 Score: 204.9 bits (520), Expect = 7.7e-50
Identity = 92/99 (92.93%), Postives = 97/99 (97.98%), Query Frame = 1


Query: 2   SQKTSCLIFEDLGKLKESFHPNDLKCSHFRRVYRNSSDFDLKNGYKLGTSISFDIPDHVP 61
           SQK+SCLIFEDLGKL+ESFHPNDLKCSHFRRVYRNSSD +LKNGYKLGTSISFDIPDHVP
Sbjct: 152 SQKSSCLIFEDLGKLQESFHPNDLKCSHFRRVYRNSSDVELKNGYKLGTSISFDIPDHVP 211

Query: 62  NLCNECEKPDGHCGVGLRCICHVLECKDKVFSKGGIVRP 101
           N C+ECEKPDGHCGVGLRCICHVL+CKDKVFSKGGIVRP
Sbjct: 212 NPCHECEKPDGHCGVGLRCICHVLDCKDKVFSKGGIVRP 250

[Close]

BLAST of Cla003533 vs. NCBI nr
Match: gi|703087171|ref|XP_010093200.1| (hypothetical protein L484_008982 [Morus notabilis])

HSP 1 Score: 146.0 bits (367), Expect = 4.3e-32
Identity = 68/113 (60.18%), Postives = 86/113 (76.11%), Query Frame = 1


Query: 6   SCLIFEDLGKLKESFHPNDLKCSHFRRVYR-NSSDFDLK-NGYKLGTSISFDIPDHVPNL 65
           +CL+ + + KL  SFHP DL CSH+RR YR  SSD D +  G++LGT ISFDIPDH PN+
Sbjct: 162 NCLLIDHVEKLDMSFHPRDLNCSHYRRFYRVESSDDDGEFEGFELGTRISFDIPDHAPNV 221

Query: 66  CNECEKPDGHCGVGLRCICHVLECKDKVFSKGGIVRPGGVFLLSLLAFFVMII 117
           C+ECEKP+G+CGVGLRCICH  ECKDKV SKGG +   G  L+SL+ F V+++
Sbjct: 222 CSECEKPNGNCGVGLRCICHAKECKDKVVSKGGSINGFGNVLVSLVCFLVVMV 274

[Close]

BLAST of Cla003533 vs. NCBI nr
Match: gi|743792457|ref|XP_011044555.1| (PREDICTED: uncharacterized protein LOC105139699 [Populus euphratica])

HSP 1 Score: 144.8 bits (364), Expect = 9.5e-32
Identity = 63/110 (57.27%), Postives = 83/110 (75.45%), Query Frame = 1


Query: 6   SCLIFEDLGKLKESFHPNDLKCSHFRRVYRNSSDFDLKNGYKLGTSISFDIPDHVPNLCN 65
           SC + +DL  L ++FHP DL CSH+ +VYR S D +   GY+LGT ISFDIPDHVP++CN
Sbjct: 161 SCSLVDDLENLGKAFHPKDLNCSHYSQVYRRSLDDEDYKGYELGTRISFDIPDHVPDICN 220

Query: 66  ECEKPDGHCGVGLRCICHVLECKDKVFSKGGIVRPGGVFLLSLLAFFVMI 116
           EC+K +G+CGVGL+CICH  +CKDKV S  G  +P    LLS+L+FFV++
Sbjct: 221 ECQKSNGNCGVGLKCICHPQDCKDKVISMAGSTKPVDSVLLSVLSFFVLV 270

The following BLAST results are available for this feature:

BLAST of Cla003533 vs. TrEMBL


Match Name	E-value	Identity	Description
W9R0T5_9ROSA	3.0e-32	60.18	Uncharacterized protein OS=Morus notabilis GN=L484_008982 PE=4 SV=1	[more]
B9T5T7_RICCO	8.7e-32	55.65	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1180720 PE=4 SV=1	[more]
A0A067KE41_JATCU	1.9e-31	58.93	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11265 PE=4 SV=1	[more]
F6GW45_VITVI	1.6e-30	57.14	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_06s0061g01370 PE=4 SV=...	[more]
B9HQU1_POPTR	3.6e-30	57.69	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0009s15040g PE=4 SV=2	[more]

BLAST of Cla003533 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659071772\|ref\|XP_008461870.1\|	7.7e-58	89.08	PREDICTED: uncharacterized protein LOC103500362 [Cucumis melo]	[more]
gi\|449443410\|ref\|XP_004139470.1\|	1.5e-56	88.98	PREDICTED: uncharacterized protein LOC101222629 isoform X1 [Cucumis sativus]	[more]
gi\|449443412\|ref\|XP_004139471.1\|	7.7e-50	92.93	PREDICTED: uncharacterized protein LOC101222629 isoform X2 [Cucumis sativus]	[more]
gi\|703087171\|ref\|XP_010093200.1\|	4.3e-32	60.18	hypothetical protein L484_008982 [Morus notabilis]	[more]
gi\|743792457\|ref\|XP_011044555.1\|	9.5e-32	57.27	PREDICTED: uncharacterized protein LOC105139699 [Populus euphratica]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0016310	phosphorylation
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0016301	kinase activity
molecular_function	GO:0030247	polysaccharide binding

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
WMU14304	watermelon unigene v2 vs TrEMBL	transcribed_cluster
WMU40824	watermelon EST collection version 2.0	transcribed_cluster
WMU58592	watermelon EST collection version 2.0	transcribed_cluster
WMU76178	watermelon EST collection version 2.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla003533	Cla003533.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
WMU14304	WMU14304	transcribed_cluster
WMU58592	WMU58592	transcribed_cluster
WMU40824	WMU40824	transcribed_cluster
WMU76178	WMU76178	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33355	FAMILY NOT NAMED	coord: 1..117 score: 7.6
None	No IPR available	PANTHER	PTHR33355:SF7	SUBFAMILY NOT NAMED	coord: 1..117 score: 7.6

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla003533	Cla97C01G011820	Watermelon (97103) v2	wmwmbB250
Cla003533	MELO3C004786	Melon (DHL92) v3.5.1	mewmB159
Cla003533	ClCG01G012620	Watermelon (Charleston Gray)	wcgwmB158
Cla003533	CSPI01G14380	Wild cucumber (PI 183967)	cpiwmB046
Cla003533	Cucsa.200000	Cucumber (Gy14) v1	cgywmB392
Cla003533	CmaCh13G002830	Cucurbita maxima (Rimu)	cmawmB199
Cla003533	CmoCh13G002960	Cucurbita moschata (Rifu)	cmowmB186
Cla003533	Lsi03G000950	Bottle gourd (USVL1VR-Ls)	lsiwmB260
Cla003533	Cp4.1LG20g07020	Cucurbita pepo (Zucchini)	cpewmB518
Cla003533	CsGy1G014310	Cucumber (Gy14) v2	cgybwmB043
Cla003533	MELO3C004786.2	Melon (DHL92) v3.6.1	medwmB155
Cla003533	CsaV3_1G014550	Cucumber (Chinese Long) v3	cucwmB049
Cla003533	Bhi08G000075	Wax gourd	wgowmB510

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla003533	Cucurbita maxima (Rimu)	cmawmB168
Cla003533	Cucurbita moschata (Rifu)	cmowmB154
Cla003533	Cucumber (Chinese Long) v2	cuwmB042
Cla003533	Watermelon (97103) v2	wmwmbB243
Cla003533	Wax gourd	wgowmB506