WMU14304 (transcribed_cluster) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	WMU14304
Type	transcribed_cluster
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Ecdysone receptor
Location	Chr1 : 14031996 .. 14032474 (-)
Sequence length	390

Genome Viewer

Sequences

The following sequences are available for this feature:

transcribed_cluster sequence

TTGTTTGATCTTTGAGGATCTTGGAAAGCTGAAGGAGAGCTTCCATCCAAATGACTTGAAAATGCTCCCATTTCAGAAGGGTTTACAGAAACTCCTCAGATTTTGACCTAAAAAATGGATACAAATTGGGAACTTCAATCTCCTTTGACATTCCTGATCATGTTCCTAATCTGTGTAATGAGTGTGAGAAGCCTGATGGGCATTGTGGAGTGGGTTTGAGATGCATATGCCATGTTCTTGAGTGCAAAGATAAGGTGTTTTCTAAGGGTGGAATTGTCAGACCTGGTGGTGTATTTCTCCTTTCTTTGCTGGCTTTTTTTGTGATGATCATTTTGTCTATGTAATGGATGTTTATTAATCTAAAAGAAACTCTTCTCATTTTAATAAGGT

Library


Library category	ESTs
watermelon fruit 18d library	1
watermelon fruit 26d library	4

Homology

[Close]

BLAST of WMU14304 vs. TAIR10
Match: AT3G44716.1 (AT3G44716.1 unknown protein)

HSP 1 Score: 66.2 bits (160), Expect = 1.6e-11
Identity = 29/71 (40.85%), Postives = 42/71 (59.15%), Query Frame = 3


Query: 123 KLGTSISFDIPDHVPNLCNECEKPDGHCGVGLRCICHVLECKDKVFSKGGIVRPGGVFLL 182
           KL   +S ++  H+P+LC  CE+P G+CGV LRC+CH  ECK+KV + G   R     L 
Sbjct: 70  KLRARVSMEVEGHIPDLCIACERPKGNCGVALRCLCHPKECKNKVINFGTKSRALSGNLQ 129

Query: 183 SLLAFFVMIIL 242
            LL   +++ +
Sbjct: 130 QLLPLLLLLAM 140

Query: 243  302
           
Sbjct: 190  140

Query: 303  336
           
Sbjct: 250  140

[Close]

BLAST of WMU14304 vs. TrEMBL
Match: B9HQU1_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0009s15040g PE=4 SV=2)

HSP 1 Score: 124.4 bits (311), Expect = 1.0e-25
Identity = 53/90 (58.89%), Postives = 71/90 (78.89%), Query Frame = 3


Query: 63  CSHFRRVYRNSSDFDLKNGYKLGTSISFDIPDHVPNLCNECEKPDGHCGVGLRCICHVLE 122
           CSH+ +VYR S D +   GY+LGT ISFDIPDHVP++CNEC+K +G+CGVGL+CICH  +
Sbjct: 181 CSHYSQVYRRSLDDEDYKGYELGTRISFDIPDHVPDICNECQKSNGNCGVGLKCICHPQD 240

Query: 123 CKDKVFSKGGIVRPGGVFLLSLLAFFVMII 182
           C+DKV S  G  +P G  LLS+L+FFV+++
Sbjct: 241 CRDKVISMAGSTKPVGNVLLSVLSFFVVLV 270

Query: 183  242
           
Sbjct: 301  270

Query: 243  302
           
Sbjct: 361  270

Query: 303  333
           
Sbjct: 421  270

[Close]

BLAST of WMU14304 vs. TrEMBL
Match: W9R0T5_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_008982 PE=4 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 1.3e-25
Identity = 58/92 (63.04%), Postives = 72/92 (78.26%), Query Frame = 3


Query: 63  CSHFRRVYR-NSSDFDLK-NGYKLGTSISFDIPDHVPNLCNECEKPDGHCGVGLRCICHV 122
           CSH+RR YR  SSD D +  G++LGT ISFDIPDH PN+C+ECEKP+G+CGVGLRCICH 
Sbjct: 183 CSHYRRFYRVESSDDDGEFEGFELGTRISFDIPDHAPNVCSECEKPNGNCGVGLRCICHA 242

Query: 123 LECKDKVFSKGGIVRPGGVFLLSLLAFFVMII 182
            ECKDKV SKGG +   G  L+SL+ F V+++
Sbjct: 243 KECKDKVVSKGGSINGFGNVLVSLVCFLVVMV 274

Query: 183  242
           
Sbjct: 303  274

Query: 243  302
           
Sbjct: 363  274

Query: 303  333
           
Sbjct: 423  274

[Close]

BLAST of WMU14304 vs. TrEMBL
Match: A0A067KE41_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11265 PE=4 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 2.5e-24
Identity = 55/91 (60.44%), Postives = 71/91 (78.02%), Query Frame = 3


Query: 63  CSHFRRVYRNSSDFDLKNGYKLGTSISFDIPDHVPNLCNECEKPDGHCGVGLRCICHVLE 122
           CSH+R VYR+SS  D  + Y+LG+ ISFDIPDHVP++CNEC+KP+G+CGVGLRCICH  E
Sbjct: 181 CSHYRLVYRSSSKDDDYSEYELGSRISFDIPDHVPDICNECQKPNGNCGVGLRCICHPKE 240

Query: 123 CKDKVFSKGGIVRP-GGVFLLSLLAFFVMII 182
           CKDKV S  G V+  G   L+S+L+F V+ +
Sbjct: 241 CKDKVISIAGSVKQFGNNVLISVLSFIVIFV 271

Query: 183  242
           
Sbjct: 301  271

Query: 243  302
           
Sbjct: 361  271

Query: 303  333
           
Sbjct: 421  271

[Close]

BLAST of WMU14304 vs. TrEMBL
Match: B9T5T7_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1180720 PE=4 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 4.2e-24
Identity = 52/94 (55.32%), Postives = 71/94 (75.53%), Query Frame = 3


Query: 63  CSHFRRVYRNS-SDFDLKNGYKLGTSISFDIPDHVPNLCNECEKPDGHCGVGLRCICHVL 122
           CSH+ R+YR+S +D D   GY+LGT ISFDIPDHVPN+C+ECEKP+G+CGVGL+CICH  
Sbjct: 181 CSHYSRIYRSSLNDDDNSIGYELGTRISFDIPDHVPNICDECEKPNGNCGVGLKCICHPK 240

Query: 123 ECKDKVFSKGGIVRP-GGVFLLSLLAFFVMIILS 182
           ECK+KV S  G ++P   + + S+L   V++  +
Sbjct: 241 ECKNKVISTAGSIKPSANIVIFSMLPLIVLVFFT 274

Query: 183  242
           
Sbjct: 301  274

Query: 243  302
           
Sbjct: 361  274

Query: 303  339
           
Sbjct: 421  274

[Close]

BLAST of WMU14304 vs. TrEMBL
Match: F6GW45_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_06s0061g01370 PE=4 SV=1)

HSP 1 Score: 118.6 bits (296), Expect = 5.5e-24
Identity = 54/90 (60.00%), Postives = 68/90 (75.56%), Query Frame = 3


Query: 63  CSHFRRVYRNSS-DFDLKNGYKLGTSISFDIPDHVPNLCNECEKPDGHCGVGLRCICHVL 122
           CSH+ RVYR+SS D D   G++LGT ISF++P HVP++C ECEK +G+CGVGLRCICH  
Sbjct: 133 CSHYSRVYRDSSGDDDGDGGFELGTRISFEVPGHVPDICKECEKSNGNCGVGLRCICHPK 192

Query: 123 ECKDKVFSKGGIVRPGGVFLLSLLAFFVMI 182
           ECKDKV S GG   P G  L SL++F +M+
Sbjct: 193 ECKDKVLSMGGSKSPLGTILFSLISFTMML 222

Query: 183  242
           
Sbjct: 253  222

Query: 243  302
           
Sbjct: 313  222

Query: 303  330
           
Sbjct: 373  222

[Close]

BLAST of WMU14304 vs. NCBI nr
Match: gi|659071772|ref|XP_008461870.1| (PREDICTED: uncharacterized protein LOC103500362 [Cucumis melo])

HSP 1 Score: 185.7 bits (470), Expect = 5.3e-44
Identity = 84/94 (89.36%), Postives = 90/94 (95.74%), Query Frame = 3


Query: 60  KCSHFRRVYRNSSDFDLKNGYKLGTSISFDIPDHVPNLCNECEKPDGHCGVGLRCICHVL 119
           KCSHFRRVYRNSSD +LKNGYKLGTSISFDIPDHVPNLC+ECEKPDGHCGVGLRCICHVL
Sbjct: 176 KCSHFRRVYRNSSDVELKNGYKLGTSISFDIPDHVPNLCHECEKPDGHCGVGLRCICHVL 235

Query: 120 ECKDKVFSKGGIVRPGGVFLLSLLAFFVMIILSM 179
           ECKDKVFSKGGIVRPGG  L+SL+A FV+II+SM
Sbjct: 236 ECKDKVFSKGGIVRPGGKILISLMAVFVVIIISM 269

Query: 180  239
           
Sbjct: 296  269

Query: 240  299
           
Sbjct: 356  269

Query: 300  342
           
Sbjct: 416  269

[Close]

BLAST of WMU14304 vs. NCBI nr
Match: gi|449443410|ref|XP_004139470.1| (PREDICTED: uncharacterized protein LOC101222629 isoform X1 [Cucumis sativus])

HSP 1 Score: 181.4 bits (459), Expect = 9.9e-43
Identity = 83/94 (88.30%), Postives = 89/94 (94.68%), Query Frame = 3


Query: 60  KCSHFRRVYRNSSDFDLKNGYKLGTSISFDIPDHVPNLCNECEKPDGHCGVGLRCICHVL 119
           KCSHFRRVYRNSSD +LKNGYKLGTSISFDIPDHVPN C+ECEKPDGHCGVGLRCICHVL
Sbjct: 176 KCSHFRRVYRNSSDVELKNGYKLGTSISFDIPDHVPNPCHECEKPDGHCGVGLRCICHVL 235

Query: 120 ECKDKVFSKGGIVRPGGVFLLSLLAFFVMIILSM 179
           +CKDKVFSKGGIVRP G FL+SLLA FV+II+SM
Sbjct: 236 DCKDKVFSKGGIVRPCGKFLISLLAVFVVIIISM 269

Query: 180  239
           
Sbjct: 296  269

Query: 240  299
           
Sbjct: 356  269

Query: 300  342
           
Sbjct: 416  269

[Close]

BLAST of WMU14304 vs. NCBI nr
Match: gi|449443412|ref|XP_004139471.1| (PREDICTED: uncharacterized protein LOC101222629 isoform X2 [Cucumis sativus])

HSP 1 Score: 162.5 bits (410), Expect = 4.8e-37
Identity = 70/75 (93.33%), Postives = 73/75 (97.33%), Query Frame = 3


Query: 60  KCSHFRRVYRNSSDFDLKNGYKLGTSISFDIPDHVPNLCNECEKPDGHCGVGLRCICHVL 119
           KCSHFRRVYRNSSD +LKNGYKLGTSISFDIPDHVPN C+ECEKPDGHCGVGLRCICHVL
Sbjct: 176 KCSHFRRVYRNSSDVELKNGYKLGTSISFDIPDHVPNPCHECEKPDGHCGVGLRCICHVL 235

Query: 120 ECKDKVFSKGGIVRP 179
           +CKDKVFSKGGIVRP
Sbjct: 236 DCKDKVFSKGGIVRP 250

Query: 180  239
           
Sbjct: 296  250

Query: 240  285
           
Sbjct: 356  250

[Close]

BLAST of WMU14304 vs. NCBI nr
Match: gi|566188076|ref|XP_002313654.2| (hypothetical protein POPTR_0009s15040g [Populus trichocarpa])

HSP 1 Score: 124.8 bits (312), Expect = 1.1e-25
Identity = 53/90 (58.89%), Postives = 71/90 (78.89%), Query Frame = 3


Query: 63  CSHFRRVYRNSSDFDLKNGYKLGTSISFDIPDHVPNLCNECEKPDGHCGVGLRCICHVLE 122
           CSH+ +VYR S D +   GY+LGT ISFDIPDHVP++CNEC+K +G+CGVGL+CICH  +
Sbjct: 181 CSHYSQVYRRSLDDEDYKGYELGTRISFDIPDHVPDICNECQKSNGNCGVGLKCICHPQD 240

Query: 123 CKDKVFSKGGIVRPGGVFLLSLLAFFVMII 182
           C+DKV S  G  +P G  LLS+L+FFV+++
Sbjct: 241 CRDKVISMAGSTKPVGNVLLSVLSFFVVLV 270

Query: 183  242
           
Sbjct: 301  270

Query: 243  302
           
Sbjct: 361  270

Query: 303  333
           
Sbjct: 421  270

[Close]

BLAST of WMU14304 vs. NCBI nr
Match: gi|703087171|ref|XP_010093200.1| (hypothetical protein L484_008982 [Morus notabilis])

HSP 1 Score: 124.4 bits (311), Expect = 1.4e-25
Identity = 58/92 (63.04%), Postives = 72/92 (78.26%), Query Frame = 3


Query: 63  CSHFRRVYR-NSSDFDLK-NGYKLGTSISFDIPDHVPNLCNECEKPDGHCGVGLRCICHV 122
           CSH+RR YR  SSD D +  G++LGT ISFDIPDH PN+C+ECEKP+G+CGVGLRCICH 
Sbjct: 183 CSHYRRFYRVESSDDDGEFEGFELGTRISFDIPDHAPNVCSECEKPNGNCGVGLRCICHA 242

Query: 123 LECKDKVFSKGGIVRPGGVFLLSLLAFFVMII 182
            ECKDKV SKGG +   G  L+SL+ F V+++
Sbjct: 243 KECKDKVVSKGGSINGFGNVLVSLVCFLVVMV 274

Query: 183  242
           
Sbjct: 303  274

Query: 243  302
           
Sbjct: 363  274

Query: 303  333
           
Sbjct: 423  274

The following BLAST results are available for this feature:

BLAST of WMU14304 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G44716.1	1.6e-11	40.85	unknown protein	[more]

BLAST of WMU14304 vs. TrEMBL


Match Name	E-value	Identity	Description
B9HQU1_POPTR	1.0e-25	58.89	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0009s15040g PE=4 SV=2	[more]
W9R0T5_9ROSA	1.3e-25	63.04	Uncharacterized protein OS=Morus notabilis GN=L484_008982 PE=4 SV=1	[more]
A0A067KE41_JATCU	2.5e-24	60.44	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11265 PE=4 SV=1	[more]
B9T5T7_RICCO	4.2e-24	55.32	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1180720 PE=4 SV=1	[more]
F6GW45_VITVI	5.5e-24	60.00	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_06s0061g01370 PE=4 SV=...	[more]

BLAST of WMU14304 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659071772\|ref\|XP_008461870.1\|	5.3e-44	89.36	PREDICTED: uncharacterized protein LOC103500362 [Cucumis melo]	[more]
gi\|449443410\|ref\|XP_004139470.1\|	9.9e-43	88.30	PREDICTED: uncharacterized protein LOC101222629 isoform X1 [Cucumis sativus]	[more]
gi\|449443412\|ref\|XP_004139471.1\|	4.8e-37	93.33	PREDICTED: uncharacterized protein LOC101222629 isoform X2 [Cucumis sativus]	[more]
gi\|566188076\|ref\|XP_002313654.2\|	1.1e-25	58.89	hypothetical protein POPTR_0009s15040g [Populus trichocarpa]	[more]
gi\|703087171\|ref\|XP_010093200.1\|	1.4e-25	63.04	hypothetical protein L484_008982 [Morus notabilis]	[more]

Relationships

This transcribed_cluster is associated with the following gene feature(s):


Feature Name	Unique Name	Type
Cla003533	Cla003533	gene

The following EST feature(s) are a part of this transcribed_cluster:


Feature Name	Unique Name	Type
S2_0099531	S2_0099531	EST
S3_0031495	S3_0031495	EST
S3_0071235	S3_0071235	EST
S3_0100059	S3_0100059	EST
S3_0135764	S3_0135764	EST