WMU40824 (transcribed_cluster) Watermelon (97103) v1

NameWMU40824
Typetranscribed_cluster
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionUnknown protein
LocationChr1 : 14032353 .. 14032785 (+)
Sequence length432
The following sequences are available for this feature:

transcribed_cluster sequence

GTATCCATCTTTAGGTCAAAATCTGAGGAGTTTCTGTAAACCTTCTGAAATGGGAGCATTTCAAGTCATTTGGATGGAAGCTCTCCTCCAGCTTTCCAAGATCCTCAAAGATCAAACAAGATGTTTTTTGGGACATCTCTCTTTCATCTTGCTTTTGTAAAGCTTCAAATTTTGGGGCAGTTTTGGGCAGATTCAGAGATGGGGTTTTGTTGGATTTGAGCAGTGGAAGAGGAGGAGTGAGTTGATGAGGTCTGGTGGAGAAGGAAGGCCTGAGGATAGAAGGGAAGGGGAAACAAAATGGTTTGAGGAAGAAGAAGGAAAATGGGGAGATTATGAGAGTTTTTGTGGTATAATCAATTTTGGAGATGGGGAAAAGGCCAATTGAAGTTCTGAAATACAGTATCTGAGATCTGCAAAGATCATATGGTTTAA
BLAST of WMU40824 vs. NCBI nr
Match: gi|449443410|ref|XP_004139470.1| (PREDICTED: uncharacterized protein LOC101222629 isoform X1 [Cucumis sativus])

HSP 1 Score: 132.9 bits (333), Expect = 4.5e-28
Identity = 76/127 (59.84%), Postives = 83/127 (65.35%), Query Frame = -3

Query: 41  LCRSQILYFRTSIGLFPISKIDYTTKTLIIXXXXXXXXXXXXXXXXXILRPSFSTRPHQL 100
           LCRSQ LYFRTSIGLFPISKIDYTTKTLII                 +L     + PH +
Sbjct: 59  LCRSQKLYFRTSIGLFPISKIDYTTKTLIISNFLSSSHHFVSPS---LLSSGLPSPPHLI 118

Query: 101 TPPLPLLKSNKT-PSLNLPKTAPKFEALQKQDEREMSQKTSCLIFEDLGKLEESFHPNDL 160
              L    SN T P     +  PKFEALQ QDE + SQK+SCLIFEDLGKL+ESFHPNDL
Sbjct: 119 NSLLLFNCSNPTKPITESAQNCPKFEALQNQDEEQTSQKSSCLIFEDLGKLQESFHPNDL 178

Query: 161 KCSHFRR 220
           KCSHFRR
Sbjct: 179 KCSHFRR 182

Query: 221 280
           
Sbjct: 239 182

Query: 281 340
           
Sbjct: 299 182

Query: 341 400
           
Sbjct: 359 182

Query: 401 419
           
Sbjct: 419 182

BLAST of WMU40824 vs. NCBI nr
Match: gi|449443412|ref|XP_004139471.1| (PREDICTED: uncharacterized protein LOC101222629 isoform X2 [Cucumis sativus])

HSP 1 Score: 132.9 bits (333), Expect = 4.5e-28
Identity = 76/127 (59.84%), Postives = 83/127 (65.35%), Query Frame = -3

Query: 41  LCRSQILYFRTSIGLFPISKIDYTTKTLIIXXXXXXXXXXXXXXXXXILRPSFSTRPHQL 100
           LCRSQ LYFRTSIGLFPISKIDYTTKTLII                 +L     + PH +
Sbjct: 59  LCRSQKLYFRTSIGLFPISKIDYTTKTLIISNFLSSSHHFVSPS---LLSSGLPSPPHLI 118

Query: 101 TPPLPLLKSNKT-PSLNLPKTAPKFEALQKQDEREMSQKTSCLIFEDLGKLEESFHPNDL 160
              L    SN T P     +  PKFEALQ QDE + SQK+SCLIFEDLGKL+ESFHPNDL
Sbjct: 119 NSLLLFNCSNPTKPITESAQNCPKFEALQNQDEEQTSQKSSCLIFEDLGKLQESFHPNDL 178

Query: 161 KCSHFRR 220
           KCSHFRR
Sbjct: 179 KCSHFRR 182

Query: 221 280
           
Sbjct: 239 182

Query: 281 340
           
Sbjct: 299 182

Query: 341 400
           
Sbjct: 359 182

Query: 401 419
           
Sbjct: 419 182

BLAST of WMU40824 vs. NCBI nr
Match: gi|659071772|ref|XP_008461870.1| (PREDICTED: uncharacterized protein LOC103500362 [Cucumis melo])

HSP 1 Score: 126.3 bits (316), Expect = 4.2e-26
Identity = 73/127 (57.48%), Postives = 80/127 (62.99%), Query Frame = -3

Query: 41  LCRSQILYFRTSIGLFPISKIDYTTKTLIIXXXXXXXXXXXXXXXXXILRPSFSTRPHQL 100
           LCRSQ LYFRTSIG+FPISKIDYTTKTLII                 +L     + PH +
Sbjct: 59  LCRSQKLYFRTSIGVFPISKIDYTTKTLIISNFLSSSHHFVSPS---LLSSGLPSPPHLI 118

Query: 101 TPPLPLLKSNKT-PSLNLPKTAPKFEALQKQDEREMSQKTSCLIFEDLGKLEESFHPNDL 160
              L    SN T P        PK  ALQ QDE ++SQK SCLIFEDLGKL+ESFHPNDL
Sbjct: 119 NSLLLFNCSNPTKPITESAHNCPKIVALQNQDEEQISQKVSCLIFEDLGKLQESFHPNDL 178

Query: 161 KCSHFRR 220
           KCSHFRR
Sbjct: 179 KCSHFRR 182

Query: 221 280
           
Sbjct: 239 182

Query: 281 340
           
Sbjct: 299 182

Query: 341 400
           
Sbjct: 359 182

Query: 401 419
           
Sbjct: 419 182

BLAST of WMU40824 vs. NCBI nr
Match: gi|802622132|ref|XP_012076209.1| (PREDICTED: uncharacterized protein LOC105637371 [Jatropha curcas])

HSP 1 Score: 79.3 bits (194), Expect = 5.9e-12
Identity = 55/145 (37.93%), Postives = 70/145 (48.28%), Query Frame = -3

Query: 44  LCRSQILYFRTSIGLFPISKIDYTTKTLIIXXXXXXXXXXXXXXXXXILRPSFSTRPHQL 103
           LCRS  LYFRTS+GLFP+S ++YTTKTL I                    PS S+  H +
Sbjct: 60  LCRSHKLYFRTSLGLFPVSSVNYTTKTLTIS------------------HPSRSSSQHFI 119

Query: 104 TPPLPLLKSNKTP------------SLNLPKTA--------PKFEALQKQDEREMSQKTS 163
           +P L LL    TP            S N P T+          F A  +  E+E+    S
Sbjct: 120 SPAL-LLAGFPTPLTPNSLLLFNCSSKNHPGTSFIGNCSRLKAFAASSQNQEQELEVPYS 179

Query: 164 CLIFEDLGKLEESFHPNDLKCSHFR 223
           CL+  D+ KL+  FHP DL CSH+R
Sbjct: 180 CLLVNDIEKLDGGFHPKDLNCSHYR 185

Query: 224 283
           
Sbjct: 240 185

Query: 284 343
           
Sbjct: 300 185

Query: 344 403
           
Sbjct: 360 185

Query: 404 419
           
Sbjct: 420 185

BLAST of WMU40824 vs. NCBI nr
Match: gi|590587297|ref|XP_007015931.1| (Uncharacterized protein TCM_041497 [Theobroma cacao])

HSP 1 Score: 77.4 bits (189), Expect = 2.2e-11
Identity = 49/128 (38.28%), Postives = 66/128 (51.56%), Query Frame = -3

Query: 41  CRSQILYFRTSIGLFPISKIDYTTKTLIIXXXXXXXXXXXXXXXXXILRPSFSTRPHQLT 100
           C+SQ LYFRTSIGLFPIS IDYT+KTL +                 +L   F + PH  +
Sbjct: 59  CKSQKLYFRTSIGLFPISSIDYTSKTLTV--SHPSCSSSQQYVSPALLSAGFPSPPHPNS 118

Query: 101 PPLPLLKSNKTPSLNLPKTAPKFE---ALQKQDEREMSQKTSCLIFEDLGKLEESFHPND 160
             L      + P  +L +   +     A  +  E E+    SCL+ +D+ KL+  FHPND
Sbjct: 119 LLLFNCSHKRHPKSSLIRNCTRLHICGAAFEVQEPEIKVPYSCLLVQDVEKLDTDFHPND 178

Query: 161 LKCSHFRR 220
           L CS +RR
Sbjct: 179 LSCSDYRR 184

Query: 221 280
           
Sbjct: 239 184

Query: 281 340
           
Sbjct: 299 184

Query: 341 400
           
Sbjct: 359 184

Query: 401 416
           
Sbjct: 419 184

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
gi|449443410|ref|XP_004139470.1|4.5e-2859.84PREDICTED: uncharacterized protein LOC101222629 isoform X1 [Cucumis sativus][more]
gi|449443412|ref|XP_004139471.1|4.5e-2859.84PREDICTED: uncharacterized protein LOC101222629 isoform X2 [Cucumis sativus][more]
gi|659071772|ref|XP_008461870.1|4.2e-2657.48PREDICTED: uncharacterized protein LOC103500362 [Cucumis melo][more]
gi|802622132|ref|XP_012076209.1|5.9e-1237.93PREDICTED: uncharacterized protein LOC105637371 [Jatropha curcas][more]
gi|590587297|ref|XP_007015931.1|2.2e-1138.28Uncharacterized protein TCM_041497 [Theobroma cacao][more]

This transcribed_cluster is associated with the following gene feature(s):

Feature NameUnique NameType
Cla003533Cla003533gene


The following EST feature(s) are a part of this transcribed_cluster:

Feature NameUnique NameType
S3_0109516S3_0109516EST
S4_0024683S4_0024683EST
S4_0064473S4_0064473EST