WMU58592 (transcribed_cluster) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	WMU58592
Type	transcribed_cluster
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Stress responsive A/B Barrel Domain
Location	Chr1 : 14032067 .. 14034867 (-)
Sequence length	211

Genome Viewer

Sequences

The following sequences are available for this feature:

transcribed_cluster sequence

CTTTGGAGTGTTTGTAGGCAGCCATAGGCCGGAGTTACAAGCACCTTGTTGTTGTCAAGTTTAAGGAGGGTGTGAATGTGGATGAAATTGTGGAGCAAGTGGAGAAGATGGTTTCTGATATTGACTCTGTCAAGTTCCTTTGAGTGAAGATAAGGTGTTTTCTAAGGGTGGAATTGTCAGACCTGGTGGTGTATTTCTCCTTTCTTTGCTT

Library


Library category	ESTs
watermelon fruit 18d library	1

Homology

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BLAST of WMU58592 vs. NCBI nr
Match: gi|659071770|ref|XP_008461858.1| (PREDICTED: uncharacterized protein At5g22580-like [Cucumis melo])

HSP 1 Score: 65.1 bits (157), Expect = 5.6e-08
Identity = 32/34 (94.12%), Postives = 33/34 (97.06%), Query Frame = 3


Query: 36  YKHLVVVKFKEGVNVDEIVEQVEKMVSDIDSVKF 95
           +KHLVV KFKEGVNVDEIVEQVEKMVSDIDSVKF
Sbjct: 4   FKHLVVAKFKEGVNVDEIVEQVEKMVSDIDSVKF 37

Query: 96   138
           
Sbjct: 64   37

[Close]

BLAST of WMU58592 vs. NCBI nr
Match: gi|449443414|ref|XP_004139472.1| (PREDICTED: uncharacterized protein At5g22580-like [Cucumis sativus])

HSP 1 Score: 59.3 bits (142), Expect = 3.0e-06
Identity = 29/33 (87.88%), Postives = 31/33 (93.94%), Query Frame = 3


Query: 36  YKHLVVVKFKEGVNVDEIVEQVEKMVSDIDSVK 95
           +KHLVV KFKEG+NVDEIV QVEKMVSDIDSVK
Sbjct: 4   FKHLVVAKFKEGLNVDEIVAQVEKMVSDIDSVK 36

Query: 96   135
           
Sbjct: 64   36

The following BLAST results are available for this feature:

BLAST of WMU58592 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659071770\|ref\|XP_008461858.1\|	5.6e-08	94.12	PREDICTED: uncharacterized protein At5g22580-like [Cucumis melo]	[more]
gi\|449443414\|ref\|XP_004139472.1\|	3.0e-06	87.88	PREDICTED: uncharacterized protein At5g22580-like [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this transcribed_cluster:

Vocabulary: **INTERPRO**
Term	Definition

Relationships

This transcribed_cluster is associated with the following gene feature(s):


Feature Name	Unique Name	Type
Cla003534	Cla003534	gene
Cla003533	Cla003533	gene

The following EST feature(s) are a part of this transcribed_cluster:


Feature Name	Unique Name	Type
S2_0001415	S2_0001415	EST

InterPro

Analysis Name: InterPro Annotations of watermelon unigene v2
Date Performed: 2016-11-16


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	G3DSA:3.30.70.900		coord: 13..43 score: 6.